Wall clock time and date at job start Tue Mar 31 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46358 * 2 1 4 4 C 1.52996 * 109.46855 * 240.00467 * 2 1 3 5 5 C 1.50699 * 109.47721 * 64.99947 * 4 2 1 6 6 H 1.08005 * 119.99635 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00258 * 179.97438 * 5 4 2 8 8 N 1.31507 * 119.99936 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99927 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.47077 * 59.99870 * 9 7 5 11 11 H 1.48498 * 109.47235 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47173 * 299.99905 * 9 7 5 13 13 C 1.52991 * 109.47407 * 120.00094 * 2 1 3 14 14 N 1.46899 * 109.47499 * 182.55382 * 13 2 1 15 15 C 1.47449 * 110.99771 * 75.92405 * 14 13 2 16 16 C 1.54318 * 107.23372 * 123.25767 * 15 14 13 17 17 C 1.55148 * 103.01572 * 22.28684 * 16 15 14 18 18 C 1.47839 * 111.00380 * 196.76619 * 14 13 2 19 19 H 1.09002 * 110.37423 * 332.46827 * 18 14 13 20 20 C 1.53003 * 110.37238 * 94.80862 * 18 14 13 21 21 H 1.08996 * 110.43396 * 184.04549 * 20 18 14 22 22 C 1.54888 * 110.48454 * 306.73066 * 20 18 14 23 23 C 1.54893 * 102.74732 * 156.61903 * 22 20 18 24 24 C 1.54265 * 104.19671 * 322.05629 * 23 22 20 25 25 C 1.53875 * 106.59761 * 23.60932 * 24 23 22 26 26 H 1.09001 * 110.07015 * 119.30582 * 25 24 23 27 27 O 1.42894 * 110.03407 * 240.71364 * 25 24 23 28 28 H 1.09003 * 109.46951 * 174.89298 * 1 2 3 29 29 H 1.08996 * 109.47599 * 54.89367 * 1 2 3 30 30 H 1.08996 * 109.47172 * 294.88659 * 1 2 3 31 31 H 1.09010 * 109.46691 * 184.99819 * 4 2 1 32 32 H 1.08996 * 109.47153 * 304.99466 * 4 2 1 33 33 H 0.97006 * 119.99827 * 179.97438 * 8 7 5 34 34 H 1.09007 * 109.47280 * 302.55683 * 13 2 1 35 35 H 1.09004 * 109.47146 * 62.55318 * 13 2 1 36 36 H 1.09000 * 109.88940 * 242.66539 * 15 14 13 37 37 H 1.09000 * 109.88600 * 3.85704 * 15 14 13 38 38 H 1.09001 * 110.70534 * 140.66695 * 16 15 14 39 39 H 1.08998 * 110.70958 * 263.90724 * 16 15 14 40 40 H 1.08999 * 110.99076 * 82.43614 * 17 16 15 41 41 H 1.09003 * 110.98721 * 206.21664 * 17 16 15 42 42 H 1.08998 * 110.75627 * 274.93517 * 22 20 18 43 43 H 1.08997 * 110.76151 * 38.30481 * 22 20 18 44 44 H 1.09003 * 110.48467 * 203.37829 * 23 22 20 45 45 H 1.09000 * 110.59760 * 80.79617 * 23 22 20 46 46 H 1.08998 * 110.03137 * 264.32758 * 24 23 22 47 47 H 1.08998 * 110.07107 * 142.92021 * 24 23 22 48 48 H 0.96696 * 114.00251 * 297.17010 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0799 0.9743 -2.3757 7 6 1.9932 -0.4016 -3.7283 8 7 2.6772 -1.5180 -3.8511 9 14 1.4984 0.5629 -5.2496 10 1 2.0895 1.9238 -5.1870 11 1 1.9934 -0.1371 -6.4622 12 1 0.0183 0.6683 -5.3092 13 6 2.0400 -0.7212 1.2491 14 7 3.5077 -0.6680 1.2804 15 6 3.9794 0.6681 1.6884 16 6 4.8792 0.4766 2.9274 17 6 5.3248 -1.0049 2.8101 18 6 4.0543 -1.6680 2.2222 19 1 3.3345 -1.8771 3.0136 20 6 4.4202 -2.9548 1.4797 21 1 4.7561 -3.7172 2.1824 22 6 3.2129 -3.4671 0.6556 23 6 3.8879 -4.3302 -0.4392 24 6 5.1707 -3.5517 -0.7972 25 6 5.5091 -2.6772 0.4228 26 1 6.4890 -2.9474 0.8165 27 8 5.4936 -1.2965 0.0548 28 1 -0.3633 -1.0236 -0.0915 29 1 -0.3634 0.5910 -0.8407 30 1 -0.3633 0.4324 0.9322 31 1 3.1263 -0.7993 -1.2056 32 1 1.6054 -1.7197 -1.2952 33 1 2.9244 -1.8409 -4.7318 34 1 1.6398 -0.2345 2.1386 35 1 1.7146 -1.7613 1.2265 36 1 4.5530 1.1216 0.8801 37 1 3.1285 1.3002 1.9423 38 1 5.7410 1.1428 2.8845 39 1 4.3120 0.6370 3.8442 40 1 6.1691 -1.1059 2.1283 41 1 5.5646 -1.4191 3.7894 42 1 2.5529 -4.0749 1.2744 43 1 2.6682 -2.6347 0.2100 44 1 3.2388 -4.4172 -1.3105 45 1 4.1368 -5.3174 -0.0499 46 1 4.9946 -2.9230 -1.6700 47 1 5.9866 -4.2465 -0.9965 48 1 6.1565 -1.0585 -0.6077 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602675308.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:38 Heat of formation + Delta-G solvation = -52.475361 kcal Electronic energy + Delta-G solvation = -25038.393265 eV Core-core repulsion = 21899.709559 eV Total energy + Delta-G solvation = -3138.683707 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.70556 -37.10234 -35.10952 -34.10018 -32.23394 -30.39910 -30.18476 -27.14340 -26.78560 -25.85219 -24.79802 -22.66076 -21.15720 -21.00605 -19.76953 -18.57130 -18.37535 -16.93066 -16.16988 -15.58930 -15.32009 -14.62297 -14.35366 -13.89566 -13.54752 -13.50972 -13.01989 -12.69939 -12.48629 -12.31509 -12.10915 -11.90046 -11.76845 -11.42635 -11.28058 -11.02359 -10.76741 -10.75075 -10.69293 -10.56787 -10.53973 -10.38687 -10.22503 -10.12777 -9.92432 -9.75037 -9.67103 -9.41351 -9.06590 -8.87074 -8.62886 -8.10671 -7.32783 -5.78594 -3.76730 3.42504 3.46609 3.49723 4.51175 4.61554 4.76553 4.95468 5.09594 5.26025 5.27739 5.36344 5.46187 5.56875 5.68952 5.77088 5.82227 5.85018 5.91733 5.95900 5.99362 6.02658 6.12485 6.17646 6.25213 6.26966 6.32235 6.39112 6.42737 6.48728 6.52530 6.54920 6.59215 6.67649 6.73273 6.76910 6.97192 7.12475 7.17110 7.20986 7.49384 7.78876 7.93296 7.98173 8.23207 8.45461 8.48136 8.71668 9.31853 9.83641 11.31700 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016337 B = 0.006841 C = 0.005864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.438832 B = 4091.793128 C = 4773.768624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.081 4.081 3 H 0.051 0.949 4 C 0.039 3.961 5 C -0.510 4.510 6 H 0.047 0.953 7 C 0.059 3.941 8 N -0.891 5.891 9 Si 0.879 3.121 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.281 1.281 13 C 0.048 3.952 14 N -0.472 5.472 15 C 0.059 3.941 16 C -0.139 4.139 17 C -0.119 4.119 18 C 0.090 3.910 19 H 0.037 0.963 20 C -0.070 4.070 21 H 0.069 0.931 22 C -0.134 4.134 23 C -0.114 4.114 24 C -0.154 4.154 25 C 0.119 3.881 26 H 0.032 0.968 27 O -0.512 6.512 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.025 0.975 31 H 0.050 0.950 32 H 0.004 0.996 33 H 0.254 0.746 34 H 0.010 0.990 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.040 0.960 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.046 0.954 43 H 0.114 0.886 44 H 0.068 0.932 45 H 0.046 0.954 46 H 0.089 0.911 47 H 0.048 0.952 48 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.991 -2.456 12.823 14.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.100 4.100 3 H 0.070 0.930 4 C 0.002 3.998 5 C -0.548 4.548 6 H 0.065 0.935 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.708 3.292 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.207 1.207 13 C -0.080 4.080 14 N -0.195 5.195 15 C -0.069 4.069 16 C -0.178 4.178 17 C -0.157 4.157 18 C -0.019 4.019 19 H 0.055 0.945 20 C -0.089 4.089 21 H 0.087 0.913 22 C -0.171 4.171 23 C -0.152 4.152 24 C -0.191 4.191 25 C 0.059 3.941 26 H 0.050 0.950 27 O -0.314 6.314 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.044 0.956 31 H 0.068 0.932 32 H 0.022 0.978 33 H 0.064 0.936 34 H 0.028 0.972 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.132 0.868 44 H 0.087 0.913 45 H 0.065 0.935 46 H 0.107 0.893 47 H 0.067 0.933 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 5.741 -2.668 12.620 14.119 hybrid contribution -0.186 0.524 -0.564 0.792 sum 5.556 -2.144 12.057 13.447 Atomic orbital electron populations 1.21724 0.97112 1.00920 0.99347 1.21182 0.93497 0.99246 0.96060 0.93021 1.19062 0.98481 0.93655 0.88604 1.21335 1.33833 1.07992 0.91666 0.93497 1.24911 0.95695 0.95080 0.98456 1.69959 1.39370 1.21120 1.22678 0.86880 0.78690 0.80311 0.83320 1.20609 1.21614 1.20687 1.22671 0.87777 1.00573 0.96950 1.63346 1.07145 1.01988 1.47044 1.22658 0.97164 0.91574 0.95513 1.22743 0.99626 0.97161 0.98253 1.22740 0.98813 0.94615 0.99527 1.22238 0.94792 0.92947 0.91890 0.94523 1.21978 0.95947 0.95473 0.95545 0.91269 1.22945 0.96975 1.00666 0.96492 1.22148 0.96957 0.96879 0.99210 1.22881 0.97022 0.99124 1.00109 1.22060 0.95315 0.83310 0.93434 0.95026 1.87035 1.59914 1.22781 1.61631 0.93753 0.92254 0.95625 0.93164 0.97802 0.93588 0.97211 0.91247 0.90565 0.94127 0.91671 0.92832 0.89589 0.92771 0.93490 0.86803 0.91276 0.93484 0.89257 0.93344 0.80137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 8.92 37.16 0.33 -2.29 16 2 C -0.08 -1.70 2.38 -90.63 -0.22 -1.92 16 3 H 0.05 1.14 7.53 -51.93 -0.39 0.74 16 4 C 0.04 0.98 3.36 -27.89 -0.09 0.89 16 5 C -0.51 -14.37 8.47 -34.44 -0.29 -14.66 16 6 H 0.05 1.31 7.06 -52.48 -0.37 0.94 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 9 Si 0.88 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 C 0.05 0.87 3.29 -3.83 -0.01 0.86 16 14 N -0.47 -7.99 1.67 -223.38 -0.37 -8.36 16 15 C 0.06 0.93 5.79 -2.83 -0.02 0.91 16 16 C -0.14 -1.80 6.94 -24.90 -0.17 -1.97 16 17 C -0.12 -1.54 6.01 -24.59 -0.15 -1.69 16 18 C 0.09 1.33 2.38 -66.19 -0.16 1.18 16 19 H 0.04 0.55 7.81 -51.93 -0.41 0.14 16 20 C -0.07 -1.03 2.94 -88.96 -0.26 -1.30 16 21 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 22 C -0.13 -2.23 5.41 -24.74 -0.13 -2.36 16 23 C -0.11 -1.89 6.83 -25.07 -0.17 -2.06 16 24 C -0.15 -2.49 6.61 -25.61 -0.17 -2.66 16 25 C 0.12 1.75 3.15 -25.61 -0.08 1.67 16 26 H 0.03 0.42 8.10 -51.93 -0.42 0.00 16 27 O -0.51 -8.25 8.45 -35.23 -0.30 -8.55 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 1.24 7.10 -51.93 -0.37 0.87 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.05 1.37 7.54 -51.92 -0.39 0.98 16 32 H 0.00 0.10 7.40 -51.93 -0.38 -0.28 16 33 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.01 0.17 7.77 -51.92 -0.40 -0.24 16 35 H 0.07 1.27 5.51 -51.93 -0.29 0.99 16 36 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.04 0.65 7.20 -51.93 -0.37 0.27 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 1.15 5.84 -51.93 -0.30 0.85 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.11 2.25 2.97 -51.93 -0.15 2.10 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.09 1.76 7.95 -51.93 -0.41 1.35 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.35 4.95 9.11 45.56 0.42 5.37 16 LS Contribution 348.96 15.07 5.26 5.26 Total: -1.00 -29.29 348.96 -9.42 -38.72 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -8.04 Total: 5.30 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: -1.69 Total: -23.81 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.36 Total: -33.88 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.30 Total: -8.55 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.29 -9.42 -38.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602675308.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.760 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds