Wall clock time and date at job start Tue Mar 31 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47233 * 2 1 4 4 C 1.53005 * 109.46858 * 239.99535 * 2 1 3 5 5 C 1.50695 * 109.47046 * 65.00524 * 4 2 1 6 6 H 1.08005 * 120.00110 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00129 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99867 * 359.72606 * 7 5 4 9 9 Si 1.86805 * 120.00024 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47132 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46805 * 120.00167 * 9 7 5 12 12 H 1.48501 * 109.47077 * 239.99712 * 9 7 5 13 13 C 1.53001 * 109.47146 * 120.00014 * 2 1 3 14 14 N 1.46901 * 109.47193 * 185.25826 * 13 2 1 15 15 C 1.47447 * 110.99727 * 75.04111 * 14 13 2 16 16 C 1.54320 * 107.22990 * 123.26111 * 15 14 13 17 17 C 1.55136 * 103.02371 * 22.27852 * 16 15 14 18 18 C 1.47850 * 110.99969 * 195.88254 * 14 13 2 19 19 H 1.08998 * 110.36962 * 332.46606 * 18 14 13 20 20 C 1.53001 * 110.37270 * 94.80658 * 18 14 13 21 21 H 1.09001 * 110.01234 * 52.84482 * 20 18 14 22 22 C 1.54265 * 110.03083 * 291.41027 * 20 18 14 23 23 C 1.54892 * 104.19101 * 217.10426 * 22 20 18 24 24 C 1.54887 * 102.75047 * 37.94136 * 23 22 20 25 25 C 1.53870 * 110.03197 * 174.23914 * 20 18 14 26 26 H 1.08995 * 110.03261 * 359.97438 * 25 20 18 27 27 O 1.42903 * 110.02963 * 238.61849 * 25 20 18 28 28 H 1.09004 * 109.47017 * 294.97098 * 1 2 3 29 29 H 1.08993 * 109.46921 * 54.96926 * 1 2 3 30 30 H 1.09000 * 109.47154 * 174.97422 * 1 2 3 31 31 H 1.08999 * 109.47191 * 304.99683 * 4 2 1 32 32 H 1.09007 * 109.46738 * 185.00141 * 4 2 1 33 33 H 0.97000 * 120.00367 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.47324 * 305.25841 * 13 2 1 35 35 H 1.08995 * 109.47493 * 65.25486 * 13 2 1 36 36 H 1.09000 * 109.88485 * 242.66128 * 15 14 13 37 37 H 1.08991 * 109.89103 * 3.69051 * 15 14 13 38 38 H 1.08998 * 110.70502 * 140.66708 * 16 15 14 39 39 H 1.09003 * 110.70577 * 263.72364 * 16 15 14 40 40 H 1.09001 * 110.98943 * 82.43559 * 17 16 15 41 41 H 1.08993 * 110.99739 * 206.22141 * 17 16 15 42 42 H 1.08997 * 110.48618 * 335.77794 * 22 20 18 43 43 H 1.08994 * 110.49283 * 98.42708 * 22 20 18 44 44 H 1.09003 * 110.75639 * 279.62509 * 23 22 20 45 45 H 1.09000 * 110.91487 * 156.32781 * 23 22 20 46 46 H 1.09003 * 110.48677 * 203.37798 * 24 23 22 47 47 H 1.09004 * 110.48912 * 80.73560 * 24 23 22 48 48 H 0.96703 * 113.99640 * 179.97438 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9932 -0.4019 -3.7282 8 7 2.6813 -1.5159 -3.8507 9 14 1.4985 0.5625 -5.2497 10 1 0.7413 1.7736 -4.8435 11 1 2.7164 0.9679 -5.9964 12 1 0.6451 -0.2873 -6.1186 13 6 2.0400 -0.7213 1.2492 14 7 3.5035 -0.6123 1.3144 15 6 3.9145 0.7404 1.7330 16 6 4.7922 0.5823 2.9925 17 6 5.2962 -0.8811 2.8859 18 6 4.0658 -1.5916 2.2688 19 1 3.3363 -1.8284 3.0433 20 6 4.4973 -2.8630 1.5351 21 1 5.1600 -2.6095 0.7076 22 6 3.2579 -3.6160 1.0091 23 6 3.6157 -5.1117 1.1937 24 6 4.3804 -5.1166 2.5406 25 6 5.2109 -3.8170 2.5088 26 1 5.2503 -3.3741 3.5039 27 8 6.5339 -4.0917 2.0435 28 1 -0.3633 0.4339 0.9316 29 1 -0.3633 0.5899 -0.8415 30 1 -0.3633 -1.0237 -0.0900 31 1 1.6054 -1.7199 -1.2950 32 1 3.1263 -0.7996 -1.2055 33 1 2.9286 -1.8390 -4.7313 34 1 1.6018 -0.2647 2.1368 35 1 1.7556 -1.7725 1.2035 36 1 4.4890 1.2160 0.9381 37 1 3.0345 1.3404 1.9643 38 1 5.6287 1.2807 2.9694 39 1 4.1988 0.7234 3.8959 40 1 6.1593 -0.9495 2.2237 41 1 5.5288 -1.2867 3.8704 42 1 2.3772 -3.3591 1.5976 43 1 3.0930 -3.3905 -0.0444 44 1 4.2576 -5.4582 0.3838 45 1 2.7149 -5.7221 1.2587 46 1 5.0346 -5.9861 2.6048 47 1 3.6809 -5.1019 3.3765 48 1 7.0361 -4.6881 2.6156 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602675309.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:41 Heat of formation + Delta-G solvation = -74.666414 kcal Electronic energy + Delta-G solvation = -23939.639674 eV Core-core repulsion = 20799.993692 eV Total energy + Delta-G solvation = -3139.645983 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.81075 -37.83903 -35.18652 -34.74012 -32.32105 -30.60251 -30.43518 -27.57220 -26.87983 -26.10308 -24.97124 -22.77038 -21.46996 -20.76802 -20.27431 -19.31185 -18.44354 -17.04041 -16.38565 -15.86251 -15.62451 -15.18232 -14.76478 -14.39303 -13.64251 -13.40412 -13.13933 -12.95076 -12.64994 -12.55670 -12.41558 -12.38877 -12.02330 -11.82151 -11.51806 -11.24657 -11.07405 -10.93854 -10.83035 -10.79367 -10.70293 -10.49863 -10.40500 -10.25145 -10.22451 -10.08736 -9.90885 -9.77968 -9.53158 -8.99669 -8.75872 -8.17939 -7.72511 -5.82951 -3.82796 3.39134 3.46763 3.50235 4.05897 4.48885 4.58601 4.71064 4.75308 4.88942 4.93016 5.05238 5.18907 5.40306 5.48617 5.52538 5.52881 5.63487 5.69982 5.75606 5.78923 5.84626 5.89634 5.92750 5.97148 6.01649 6.03883 6.15556 6.16548 6.27291 6.29686 6.34230 6.40780 6.46958 6.50616 6.57364 6.67653 6.80994 7.05184 7.11399 7.37479 7.51691 7.67724 7.73828 7.91706 8.14485 8.28337 8.64184 9.25268 9.79033 11.28019 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015869 B = 0.005225 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.036218 B = 5358.024611 C = 6097.879122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.038 3.962 5 C -0.511 4.511 6 H 0.051 0.949 7 C 0.056 3.944 8 N -0.893 5.893 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.054 3.946 14 N -0.508 5.508 15 C 0.046 3.954 16 C -0.143 4.143 17 C -0.123 4.123 18 C 0.083 3.917 19 H 0.047 0.953 20 C -0.066 4.066 21 H 0.095 0.905 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.156 4.156 25 C 0.103 3.897 26 H 0.053 0.947 27 O -0.561 6.561 28 H 0.026 0.974 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.008 0.992 32 H 0.034 0.966 33 H 0.256 0.744 34 H 0.016 0.984 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.171 -3.931 17.280 18.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.101 4.101 3 H 0.072 0.928 4 C 0.001 3.999 5 C -0.550 4.550 6 H 0.069 0.931 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.711 3.289 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.213 1.213 13 C -0.073 4.073 14 N -0.231 5.231 15 C -0.082 4.082 16 C -0.181 4.181 17 C -0.161 4.161 18 C -0.026 4.026 19 H 0.065 0.935 20 C -0.085 4.085 21 H 0.113 0.887 22 C -0.153 4.153 23 C -0.160 4.160 24 C -0.194 4.194 25 C 0.044 3.956 26 H 0.071 0.929 27 O -0.365 6.365 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.026 0.974 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.034 0.966 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 4.229 -3.722 16.161 17.114 hybrid contribution -0.502 0.286 0.330 0.665 sum 3.727 -3.436 16.491 17.252 Atomic orbital electron populations 1.21703 0.96695 1.01084 0.99495 1.21200 0.93906 0.99238 0.95767 0.92840 1.19025 0.97435 0.94285 0.89113 1.21362 1.34066 1.08103 0.91449 0.93098 1.24975 0.95548 0.95102 0.98781 1.69982 1.39075 1.21405 1.22863 0.86689 0.78163 0.80185 0.83838 1.19974 1.21238 1.21285 1.22599 0.86250 1.01258 0.97218 1.63335 1.10569 1.02390 1.46836 1.22813 0.98341 0.91292 0.95723 1.22794 0.99741 0.97261 0.98313 1.22742 0.98439 0.94598 1.00292 1.22543 0.95000 0.92795 0.92238 0.93550 1.21631 0.96712 0.92380 0.97788 0.88684 1.22486 0.96525 0.93273 1.03063 1.22470 0.99511 0.97418 0.96585 1.23086 0.99605 0.97882 0.98804 1.22533 0.82173 0.94286 0.96584 0.92939 1.86621 1.26309 1.69945 1.53670 0.95512 0.92093 0.93601 0.97388 0.94808 0.93409 0.96602 0.90867 0.90492 0.92974 0.91143 0.92147 0.90231 0.91720 0.91994 0.89555 0.91239 0.91933 0.91588 0.91408 0.78436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.92 37.16 0.33 -2.19 16 2 C -0.08 -1.71 2.37 -90.62 -0.22 -1.92 16 3 H 0.05 1.15 7.42 -51.93 -0.39 0.76 16 4 C 0.04 0.99 4.39 -27.88 -0.12 0.87 16 5 C -0.51 -14.56 8.47 -34.44 -0.29 -14.85 16 6 H 0.05 1.43 7.06 -52.48 -0.37 1.06 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -27.32 13.29 55.43 0.74 -26.58 16 9 Si 0.88 22.17 29.54 -169.99 -5.02 17.15 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 C 0.05 0.95 3.80 -3.82 -0.01 0.94 16 14 N -0.51 -8.63 4.10 -223.38 -0.92 -9.54 16 15 C 0.05 0.70 6.22 -2.83 -0.02 0.69 16 16 C -0.14 -1.74 6.94 -24.91 -0.17 -1.91 16 17 C -0.12 -1.54 5.66 -24.60 -0.14 -1.68 16 18 C 0.08 1.19 1.83 -66.18 -0.12 1.07 16 19 H 0.05 0.64 7.74 -51.93 -0.40 0.24 16 20 C -0.07 -0.99 2.52 -89.50 -0.23 -1.22 16 21 H 0.09 1.75 7.95 -51.93 -0.41 1.34 16 22 C -0.12 -1.80 5.23 -25.07 -0.13 -1.93 16 23 C -0.12 -1.62 6.91 -24.74 -0.17 -1.79 16 24 C -0.16 -1.70 6.56 -25.07 -0.16 -1.87 16 25 C 0.10 1.25 3.50 -25.62 -0.09 1.16 16 26 H 0.05 0.56 6.70 -51.93 -0.35 0.22 16 27 O -0.56 -6.98 13.22 -35.23 -0.47 -7.44 16 28 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 1.24 7.10 -51.93 -0.37 0.87 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.03 0.95 7.63 -51.93 -0.40 0.56 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.02 0.26 7.80 -51.93 -0.40 -0.15 16 35 H 0.07 1.29 5.11 -51.93 -0.27 1.02 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.05 0.78 7.17 -51.93 -0.37 0.41 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 1.10 8.06 -51.93 -0.42 0.68 16 41 H 0.06 0.69 7.55 -51.93 -0.39 0.30 16 42 H 0.06 0.92 6.07 -51.93 -0.32 0.61 16 43 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.37 2.83 9.11 45.56 0.41 3.25 16 LS Contribution 360.49 15.07 5.43 5.43 Total: -1.00 -31.30 360.49 -10.09 -41.40 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -8.22 Total: 2.68 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: -1.64 Total: -23.10 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: -0.18 Total: -36.12 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.47 Total: -7.44 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.30 -10.09 -41.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602675309.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.269 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds