Wall clock time and date at job start Tue Mar 31 2020 06:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47049 * 2 1 4 4 C 1.52997 * 109.47097 * 119.99799 * 2 1 3 5 5 C 1.50701 * 109.47531 * 295.00058 * 4 2 1 6 6 H 1.08000 * 119.99466 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00205 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99981 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 120.00075 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47279 * 89.99957 * 9 7 5 11 11 H 1.48503 * 109.47157 * 209.99790 * 9 7 5 12 12 H 1.48503 * 109.47335 * 329.99826 * 9 7 5 13 13 C 1.52999 * 109.47284 * 240.00019 * 2 1 3 14 14 N 1.46904 * 109.46961 * 65.00003 * 13 2 1 15 15 C 1.46902 * 110.99464 * 180.02562 * 14 13 2 16 16 C 1.53010 * 109.46645 * 179.97438 * 15 14 13 17 17 H 1.08992 * 109.55554 * 305.20298 * 16 15 14 18 18 C 1.53153 * 109.63380 * 65.46199 * 16 15 14 19 19 C 1.53045 * 109.40921 * 178.51394 * 18 16 15 20 20 O 1.43037 * 109.44615 * 300.67894 * 19 18 16 21 21 C 1.42578 * 113.85098 * 58.72853 * 20 19 18 22 22 C 1.53388 * 113.63252 * 171.78361 * 21 20 19 23 23 C 1.53853 * 86.98383 * 220.10701 * 22 21 20 24 24 C 1.53598 * 113.61293 * 73.80108 * 21 20 19 25 25 C 1.52815 * 112.93396 * 302.89270 * 21 20 19 26 26 H 1.09006 * 109.47448 * 59.99829 * 1 2 3 27 27 H 1.08998 * 109.47511 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47377 * 300.00326 * 1 2 3 29 29 H 1.08997 * 109.47256 * 55.00240 * 4 2 1 30 30 H 1.09003 * 109.47189 * 175.00058 * 4 2 1 31 31 H 0.97000 * 120.00181 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47070 * 305.00008 * 13 2 1 33 33 H 1.09002 * 109.47211 * 185.00055 * 13 2 1 34 34 H 1.00897 * 111.00246 * 56.05048 * 14 13 2 35 35 H 1.08999 * 109.47309 * 60.00350 * 15 14 13 36 36 H 1.08998 * 109.47359 * 299.99757 * 15 14 13 37 37 H 1.08997 * 109.48505 * 298.49504 * 18 16 15 38 38 H 1.09005 * 109.48586 * 58.53412 * 18 16 15 39 39 H 1.09006 * 109.47432 * 60.67124 * 19 18 16 40 40 H 1.09008 * 109.47207 * 180.67906 * 19 18 16 41 41 H 1.08998 * 113.63343 * 105.58649 * 22 21 20 42 42 H 1.09000 * 113.71061 * 334.64140 * 22 21 20 43 43 H 1.09002 * 113.60655 * 139.72926 * 23 22 21 44 44 H 1.08998 * 113.60363 * 270.52206 * 23 22 21 45 45 H 1.09002 * 113.62768 * 25.41560 * 24 21 20 46 46 H 1.09005 * 113.67996 * 254.42187 * 24 21 20 47 47 H 1.09006 * 109.56215 * 173.77303 * 25 21 20 48 48 H 1.08998 * 109.56282 * 294.11128 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9923 -0.4022 3.7283 8 7 1.6448 0.2773 4.7994 9 14 2.9626 -1.9888 3.9029 10 1 4.4161 -1.6853 3.8793 11 1 2.6144 -2.6430 5.1898 12 1 2.6288 -2.8995 2.7784 13 6 2.0400 -0.7212 -1.2492 14 7 1.6513 0.0375 -2.4456 15 6 2.1248 -0.6271 -3.6672 16 6 1.7013 0.1904 -4.8893 17 1 0.6230 0.3473 -4.8675 18 6 2.4168 1.5444 -4.8757 19 6 2.0182 2.3428 -6.1191 20 8 2.3793 1.6086 -7.2924 21 6 1.7735 0.3206 -7.3757 22 6 2.0012 -0.3802 -8.7210 23 6 0.5407 -0.8550 -8.6287 24 6 0.2793 0.3652 -7.7290 25 6 2.0846 -0.5630 -6.1684 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.6053 -1.7197 1.2952 30 1 3.1263 -0.7994 1.2056 31 1 1.8914 -0.0460 5.6800 32 1 1.6054 -1.7198 -1.2951 33 1 3.1263 -0.7995 -1.2055 34 1 1.9881 0.9873 -2.3967 35 1 1.6904 -1.6249 -3.7296 36 1 3.2116 -0.7051 -3.6405 37 1 2.1308 2.0978 -3.9813 38 1 3.4953 1.3858 -4.8759 39 1 0.9413 2.5113 -6.1129 40 1 2.5363 3.3019 -6.1166 41 1 2.7280 -1.1911 -8.6738 42 1 2.1860 0.3065 -9.5472 43 1 0.0088 -0.8182 -9.5794 44 1 0.4237 -1.8091 -8.1149 45 1 -0.0130 1.2595 -8.2794 46 1 -0.3767 0.1531 -6.8846 47 1 1.5094 -1.4867 -6.2342 48 1 3.1495 -0.7948 -6.1505 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602676506.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:21 Heat of formation + Delta-G solvation = -54.431972 kcal Electronic energy + Delta-G solvation = -22530.014285 eV Core-core repulsion = 19391.245733 eV Total energy + Delta-G solvation = -3138.768552 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.83047 -37.55870 -36.50877 -35.15817 -32.92824 -31.62990 -29.88121 -27.71253 -26.58109 -26.12999 -24.58890 -24.04580 -22.77983 -21.85669 -20.44010 -19.07280 -18.79129 -16.92324 -16.75827 -16.19795 -15.96259 -15.37404 -14.75940 -14.69210 -14.28253 -14.14948 -13.85425 -13.50133 -13.31106 -13.15836 -12.74519 -12.52980 -12.23306 -12.08472 -11.82886 -11.68926 -11.61127 -11.51514 -11.25157 -11.08223 -11.00533 -10.94673 -10.67371 -10.54804 -10.37652 -10.16052 -9.91300 -9.65399 -9.61629 -9.36564 -9.04631 -8.50961 -8.19895 -6.01364 -3.98198 3.31393 3.39023 3.42828 3.51618 4.06641 4.23599 4.37255 4.45881 4.47348 4.50405 4.59704 4.72145 4.88190 4.97754 5.19371 5.26158 5.29557 5.32275 5.40080 5.42133 5.43939 5.55188 5.56703 5.59246 5.63696 5.66134 5.73609 5.74958 5.81228 5.94192 5.97970 6.02993 6.03869 6.20471 6.31479 6.42690 6.59361 6.85702 7.04206 7.06934 7.14780 7.25487 7.30707 7.48200 7.59361 7.83696 8.58291 9.04430 9.61606 11.12106 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.037171 B = 0.002722 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.093343 B =10283.012266 C =10454.252759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.074 4.074 3 H 0.059 0.941 4 C -0.010 4.010 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.061 3.939 14 N -0.687 5.687 15 C 0.065 3.935 16 C -0.085 4.085 17 H 0.082 0.918 18 C -0.153 4.153 19 C 0.063 3.937 20 O -0.370 6.370 21 C 0.094 3.906 22 C -0.123 4.123 23 C -0.140 4.140 24 C -0.163 4.163 25 C -0.119 4.119 26 H 0.044 0.956 27 H 0.038 0.962 28 H 0.058 0.942 29 H 0.016 0.984 30 H 0.007 0.993 31 H 0.262 0.738 32 H 0.066 0.934 33 H 0.023 0.977 34 H 0.337 0.663 35 H 0.070 0.930 36 H 0.026 0.974 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.020 -0.837 -27.478 27.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.093 4.093 3 H 0.077 0.923 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.318 5.318 15 C -0.065 4.065 16 C -0.104 4.104 17 H 0.100 0.900 18 C -0.191 4.191 19 C -0.014 4.014 20 O -0.289 6.289 21 C 0.054 3.946 22 C -0.160 4.160 23 C -0.177 4.177 24 C -0.200 4.200 25 C -0.157 4.157 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.034 0.966 30 H 0.026 0.974 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.156 0.844 35 H 0.088 0.912 36 H 0.044 0.956 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.109 0.891 41 H 0.092 0.908 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.091 0.909 47 H 0.095 0.905 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.472 -1.057 -27.447 27.471 hybrid contribution 1.388 -0.718 0.633 1.686 sum 0.916 -1.775 -26.814 26.888 Atomic orbital electron populations 1.21591 0.95252 1.00617 1.00655 1.21002 0.96374 0.98963 0.92917 0.92301 1.19616 0.95343 0.96256 0.93522 1.21134 1.35280 1.09509 0.89092 0.90827 1.25031 0.95731 0.96904 0.95968 1.69914 1.47279 1.39278 0.98000 0.86803 0.80576 0.84555 0.77471 1.20454 1.21468 1.19085 1.22175 0.97032 0.97787 0.89753 1.60533 1.64036 1.05811 1.01418 1.21945 0.97100 0.97945 0.89516 1.21208 1.01142 0.94581 0.93479 0.89961 1.22245 1.01119 0.96789 0.98974 1.22524 0.99730 0.94637 0.84476 1.87924 1.70931 1.27960 1.42071 1.22709 0.92604 0.84290 0.95016 1.23005 0.97210 0.99480 0.96323 1.22718 0.96483 0.98102 1.00392 1.23549 0.97139 0.99056 1.00284 1.21867 1.02380 0.98256 0.93219 0.93719 0.94249 0.92260 0.96617 0.97430 0.92838 0.91592 0.95902 0.84440 0.91180 0.95595 0.90315 0.91335 0.93064 0.89071 0.90815 0.89276 0.90916 0.89841 0.89555 0.90929 0.90463 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.89 37.15 0.33 -2.04 16 2 C -0.07 -1.45 2.48 -90.63 -0.22 -1.67 16 3 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 4 C -0.01 -0.23 3.52 -27.88 -0.10 -0.32 16 5 C -0.51 -14.53 8.96 -34.44 -0.31 -14.84 16 6 H 0.07 2.24 7.30 -52.49 -0.38 1.86 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.08 13.96 55.43 0.77 -27.31 16 9 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 13 C 0.06 1.00 5.07 -3.82 -0.02 0.98 16 14 N -0.69 -9.31 5.95 -113.77 -0.68 -9.99 16 15 C 0.06 0.73 5.15 -3.82 -0.02 0.71 16 16 C -0.09 -0.83 2.39 -90.37 -0.22 -1.04 16 17 H 0.08 0.86 7.61 -51.93 -0.40 0.46 16 18 C -0.15 -1.45 5.12 -26.63 -0.14 -1.58 16 19 C 0.06 0.58 6.74 37.18 0.25 0.83 16 20 O -0.37 -3.95 10.53 -35.23 -0.37 -4.32 16 21 C 0.09 0.84 1.16 -90.20 -0.10 0.73 16 22 C -0.12 -0.94 7.50 -26.09 -0.20 -1.13 16 23 C -0.14 -0.94 7.72 -25.85 -0.20 -1.14 16 24 C -0.16 -1.30 6.91 -25.99 -0.18 -1.48 16 25 C -0.12 -1.05 4.46 -26.66 -0.12 -1.17 16 26 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 29 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 30 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.34 4.38 7.06 -39.29 -0.28 4.10 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.74 6.78 -51.93 -0.35 0.38 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.45 7.84 -51.93 -0.41 0.04 16 40 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 41 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.52 7.62 -51.93 -0.40 0.13 16 45 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.59 7.56 -51.93 -0.39 0.20 16 47 H 0.08 0.62 7.31 -51.93 -0.38 0.24 16 48 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 362.85 15.07 5.47 5.47 Total: -1.00 -30.40 362.85 -9.99 -40.38 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -9.17 Total: -0.10 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -1.34 Total: -21.40 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.10 Total: -37.30 kcal Atomic # 8 Polarization: -3.95 SS G_CDS: -0.37 Total: -4.32 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.40 -9.99 -40.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602676506.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.047 kcal (2) G-P(sol) polarization free energy of solvation -30.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds