Wall clock time and date at job start Tue Mar 31 2020 06:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.46912 * 2 1 4 4 C 1.52992 * 109.47385 * 239.99967 * 2 1 3 5 5 C 1.50702 * 109.47424 * 65.00041 * 4 2 1 6 6 H 1.08003 * 119.99553 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00316 * 180.02562 * 5 4 2 8 8 N 1.31505 * 120.00018 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99839 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47229 * 90.00125 * 9 7 5 11 11 H 1.48497 * 109.47332 * 210.00101 * 9 7 5 12 12 H 1.48503 * 109.47229 * 329.99950 * 9 7 5 13 13 C 1.52997 * 109.46921 * 119.99435 * 2 1 3 14 14 N 1.46902 * 109.47468 * 295.00505 * 13 2 1 15 15 C 1.46900 * 111.00019 * 179.97438 * 14 13 2 16 16 C 1.53003 * 109.47041 * 179.97438 * 15 14 13 17 17 H 1.08989 * 109.55183 * 305.20395 * 16 15 14 18 18 C 1.53153 * 109.54998 * 65.51315 * 16 15 14 19 19 C 1.53045 * 109.40921 * 178.46437 * 18 16 15 20 20 O 1.43037 * 109.44615 * 300.67894 * 19 18 16 21 21 C 1.42578 * 113.85098 * 58.72853 * 20 19 18 22 22 C 1.53388 * 113.63252 * 171.78361 * 21 20 19 23 23 C 1.53853 * 86.98383 * 220.10701 * 22 21 20 24 24 C 1.53598 * 113.61293 * 73.80108 * 21 20 19 25 25 C 1.52815 * 112.93396 * 302.89270 * 21 20 19 26 26 H 1.09001 * 109.47734 * 300.00062 * 1 2 3 27 27 H 1.09003 * 109.46895 * 60.00690 * 1 2 3 28 28 H 1.09000 * 109.47056 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46877 * 185.00288 * 4 2 1 30 30 H 1.09005 * 109.47172 * 304.99958 * 4 2 1 31 31 H 0.97004 * 120.00122 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.46914 * 175.00082 * 13 2 1 33 33 H 1.09005 * 109.46957 * 55.00518 * 13 2 1 34 34 H 1.00895 * 110.99997 * 56.04434 * 14 13 2 35 35 H 1.09002 * 109.46916 * 59.99999 * 15 14 13 36 36 H 1.08999 * 109.47457 * 300.00353 * 15 14 13 37 37 H 1.08997 * 109.48505 * 298.44548 * 18 16 15 38 38 H 1.09005 * 109.48586 * 58.48456 * 18 16 15 39 39 H 1.09006 * 109.47432 * 60.67124 * 19 18 16 40 40 H 1.09008 * 109.47207 * 180.67906 * 19 18 16 41 41 H 1.08998 * 113.63343 * 105.58649 * 22 21 20 42 42 H 1.09000 * 113.71061 * 334.64140 * 22 21 20 43 43 H 1.09002 * 113.60655 * 139.72926 * 23 22 21 44 44 H 1.08998 * 113.60363 * 270.52206 * 23 22 21 45 45 H 1.09002 * 113.62768 * 25.41560 * 24 21 20 46 46 H 1.09005 * 113.67996 * 254.42187 * 24 21 20 47 47 H 1.09006 * 109.56215 * 173.77303 * 25 21 20 48 48 H 1.08998 * 109.56282 * 294.11128 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0807 0.9746 -2.3757 7 6 1.9925 -0.4023 -3.7283 8 7 1.6442 0.2766 -4.7993 9 14 2.9629 -1.9889 -3.9027 10 1 2.0238 -3.1333 -4.0188 11 1 3.8111 -1.9192 -5.1196 12 1 3.8254 -2.1755 -2.7083 13 6 2.0399 -0.7211 1.2493 14 7 1.6512 0.0376 2.4457 15 6 2.1246 -0.6270 3.6673 16 6 1.7021 0.1912 4.8893 17 1 2.0587 1.2156 4.7833 18 6 0.1751 0.1870 5.0059 19 6 -0.2421 0.9739 6.2504 20 8 0.3404 0.3738 7.4108 21 6 1.7646 0.3153 7.3763 22 6 2.3934 -0.1427 8.6983 23 6 3.4766 0.9232 8.4583 24 6 2.4419 1.6750 7.6036 25 6 2.3004 -0.4321 6.1558 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1263 -0.7994 -1.2054 30 1 1.6054 -1.7198 -1.2951 31 1 1.8915 -0.0463 -5.6800 32 1 3.1263 -0.7993 1.2057 33 1 1.6053 -1.7197 1.2952 34 1 0.6527 0.1794 2.4753 35 1 3.2115 -0.7048 3.6407 36 1 1.6903 -1.6247 3.7298 37 1 -0.2585 0.6511 4.1201 38 1 -0.1804 -0.8401 5.0892 39 1 0.1033 2.0040 6.1618 40 1 -1.3283 0.9614 6.3411 41 1 2.7722 -1.1644 8.6711 42 1 1.7714 0.0553 9.5712 43 1 3.7692 1.4592 9.3612 44 1 4.3304 0.5571 7.8882 45 1 1.8323 2.3771 8.1725 46 1 2.8594 2.1132 6.6970 47 1 3.3869 -0.3493 6.1252 48 1 2.0143 -1.4821 6.2162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602676507.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:23 Heat of formation + Delta-G solvation = -54.151964 kcal Electronic energy + Delta-G solvation = -22547.839639 eV Core-core repulsion = 19409.083230 eV Total energy + Delta-G solvation = -3138.756410 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.83100 -37.61137 -36.53063 -35.16350 -32.92626 -31.61210 -29.88233 -27.74816 -26.62100 -26.12889 -24.74714 -24.04831 -22.80516 -21.77678 -20.42511 -18.97241 -18.80126 -16.93483 -16.82967 -16.21088 -16.02066 -15.47759 -14.75110 -14.71637 -14.28827 -14.00881 -13.88992 -13.51496 -13.36411 -13.10067 -12.71095 -12.58641 -12.24806 -12.13007 -11.94623 -11.74935 -11.62039 -11.52298 -11.23333 -11.06556 -11.04682 -10.99201 -10.71382 -10.55376 -10.42053 -10.16421 -9.80900 -9.72698 -9.62642 -9.38054 -9.04972 -8.51250 -8.22040 -6.01419 -3.98296 3.31548 3.39161 3.42874 3.51457 4.06858 4.23849 4.37563 4.46017 4.47342 4.50567 4.59835 4.71837 4.87876 4.97893 5.19246 5.26312 5.29613 5.32157 5.40256 5.42300 5.43923 5.56014 5.57191 5.58958 5.63946 5.68622 5.69874 5.73971 5.79211 5.91880 5.96530 5.98312 6.03375 6.14005 6.21339 6.37664 6.45555 6.76594 6.96437 7.05922 7.06722 7.24322 7.32665 7.48491 7.59979 7.83444 8.58066 9.04243 9.61547 11.12033 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.036681 B = 0.002746 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.147000 B =10192.462803 C =10538.601644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 H 0.071 0.929 4 C -0.009 4.009 5 C -0.513 4.513 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.062 3.938 14 N -0.690 5.690 15 C 0.064 3.936 16 C -0.086 4.086 17 H 0.082 0.918 18 C -0.153 4.153 19 C 0.063 3.937 20 O -0.370 6.370 21 C 0.093 3.907 22 C -0.123 4.123 23 C -0.140 4.140 24 C -0.163 4.163 25 C -0.119 4.119 26 H 0.033 0.967 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.015 0.985 30 H 0.009 0.991 31 H 0.262 0.738 32 H 0.066 0.934 33 H 0.023 0.977 34 H 0.338 0.662 35 H 0.070 0.930 36 H 0.026 0.974 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.440 -0.611 27.365 27.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.094 4.094 3 H 0.090 0.910 4 C -0.046 4.046 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.322 5.322 15 C -0.066 4.066 16 C -0.105 4.105 17 H 0.101 0.899 18 C -0.191 4.191 19 C -0.014 4.014 20 O -0.289 6.289 21 C 0.054 3.946 22 C -0.160 4.160 23 C -0.177 4.177 24 C -0.200 4.200 25 C -0.157 4.157 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.027 0.973 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.158 0.842 35 H 0.089 0.911 36 H 0.044 0.956 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.109 0.891 41 H 0.092 0.908 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.105 0.895 46 H 0.091 0.909 47 H 0.096 0.904 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.882 -0.262 27.280 27.296 hybrid contribution -0.008 -1.539 -0.551 1.635 sum 0.874 -1.801 26.729 26.804 Atomic orbital electron populations 1.21751 0.96280 1.00482 1.00776 1.21029 0.95181 1.00199 0.93033 0.91028 1.19602 0.95931 0.95676 0.93439 1.21135 1.35296 1.09543 0.89086 0.90822 1.25030 0.95668 0.96955 0.95964 1.69912 1.47215 1.39331 0.97997 0.86801 0.80654 0.84316 0.77630 1.20449 1.21474 1.19085 1.22162 1.00268 0.94447 0.89834 1.60587 1.19764 1.50458 1.01381 1.21952 1.00419 0.94808 0.89394 1.21213 0.94924 1.00844 0.93479 0.89920 1.22245 0.96348 1.01634 0.98899 1.22523 0.98160 0.95797 0.84889 1.87923 1.18951 1.81623 1.40377 1.22711 0.80848 0.95682 0.95387 1.23004 0.96862 0.99419 0.96721 1.22718 0.96690 0.97843 1.00442 1.23550 0.98463 0.97269 1.00758 1.21867 1.00778 0.99941 0.93128 0.94805 0.91299 0.94101 0.96692 0.97278 0.92834 0.91544 0.95920 0.84217 0.91131 0.95601 0.90399 0.91329 0.93043 0.89070 0.90813 0.89276 0.90911 0.89829 0.89550 0.90913 0.90428 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.77 37.16 0.33 -2.15 16 2 C -0.08 -1.49 2.54 -90.63 -0.23 -1.72 16 3 H 0.07 1.50 8.14 -51.92 -0.42 1.08 16 4 C -0.01 -0.21 3.52 -27.89 -0.10 -0.30 16 5 C -0.51 -14.51 8.96 -34.44 -0.31 -14.82 16 6 H 0.07 2.24 7.30 -52.48 -0.38 1.85 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.04 13.96 55.43 0.77 -27.27 16 9 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 12 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 13 C 0.06 1.01 5.14 -3.82 -0.02 0.99 16 14 N -0.69 -9.58 6.50 -113.77 -0.74 -10.32 16 15 C 0.06 0.74 5.15 -3.82 -0.02 0.72 16 16 C -0.09 -0.85 2.40 -90.38 -0.22 -1.06 16 17 H 0.08 0.88 7.61 -51.94 -0.40 0.48 16 18 C -0.15 -1.46 5.11 -26.63 -0.14 -1.59 16 19 C 0.06 0.58 6.74 37.18 0.25 0.83 16 20 O -0.37 -3.95 10.53 -35.23 -0.37 -4.32 16 21 C 0.09 0.84 1.16 -90.20 -0.10 0.73 16 22 C -0.12 -0.94 7.50 -26.09 -0.20 -1.14 16 23 C -0.14 -0.95 7.72 -25.85 -0.20 -1.15 16 24 C -0.16 -1.31 6.91 -25.99 -0.18 -1.49 16 25 C -0.12 -1.05 4.46 -26.66 -0.12 -1.17 16 26 H 0.03 0.52 6.68 -51.93 -0.35 0.17 16 27 H 0.07 1.42 6.95 -51.93 -0.36 1.06 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 30 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.34 4.47 5.30 -39.29 -0.21 4.26 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.74 6.77 -51.93 -0.35 0.39 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.45 7.84 -51.93 -0.41 0.05 16 40 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 41 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.53 7.62 -51.93 -0.40 0.13 16 45 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.60 7.56 -51.93 -0.39 0.21 16 47 H 0.08 0.62 7.31 -51.93 -0.38 0.24 16 48 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 360.59 15.07 5.43 5.43 Total: -1.00 -30.36 360.59 -9.97 -40.33 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -9.05 Total: 0.46 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -1.35 Total: -21.55 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.03 Total: -37.59 kcal Atomic # 8 Polarization: -3.95 SS G_CDS: -0.37 Total: -4.32 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.36 -9.97 -40.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602676507.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.823 kcal (2) G-P(sol) polarization free energy of solvation -30.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds