Wall clock time and date at job start Tue Mar 31 2020 06:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 5 5 C 1.50703 * 109.46912 * 294.99775 * 4 2 1 6 6 H 1.07996 * 119.99751 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00001 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00094 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99955 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47171 * 89.99544 * 9 7 5 11 11 H 1.48500 * 109.46632 * 209.99795 * 9 7 5 12 12 H 1.48494 * 109.47053 * 329.99231 * 9 7 5 13 13 C 1.53002 * 109.47165 * 239.99518 * 2 1 3 14 14 N 1.46903 * 109.47041 * 65.00006 * 13 2 1 15 15 C 1.46895 * 110.99989 * 179.97438 * 14 13 2 16 16 C 1.53007 * 109.47076 * 180.02562 * 15 14 13 17 17 H 1.08999 * 109.54864 * 55.20664 * 16 15 14 18 18 C 1.53162 * 109.55337 * 295.00258 * 16 15 14 19 19 C 1.53044 * 109.41035 * 181.53297 * 18 16 15 20 20 O 1.43042 * 109.44218 * 59.32196 * 19 18 16 21 21 C 1.42580 * 113.84924 * 301.26751 * 20 19 18 22 22 C 1.53423 * 113.56055 * 286.14566 * 21 20 19 23 23 C 1.53848 * 86.97383 * 220.03619 * 22 21 20 24 24 C 1.53395 * 113.63447 * 188.22072 * 21 20 19 25 25 C 1.52814 * 112.93895 * 57.11215 * 21 20 19 26 26 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 27 27 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 28 28 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47398 * 54.99853 * 4 2 1 30 30 H 1.09001 * 109.47194 * 175.00033 * 4 2 1 31 31 H 0.97000 * 120.00333 * 179.97438 * 8 7 5 32 32 H 1.08993 * 109.47416 * 185.00006 * 13 2 1 33 33 H 1.09001 * 109.46966 * 305.00739 * 13 2 1 34 34 H 1.00900 * 111.00136 * 303.96001 * 14 13 2 35 35 H 1.08995 * 109.47696 * 300.00413 * 15 14 13 36 36 H 1.09005 * 109.46827 * 60.00647 * 15 14 13 37 37 H 1.08993 * 109.48120 * 301.51742 * 18 16 15 38 38 H 1.08997 * 109.47741 * 61.54261 * 18 16 15 39 39 H 1.08995 * 109.46821 * 179.30988 * 19 18 16 40 40 H 1.08993 * 109.47721 * 299.32338 * 19 18 16 41 41 H 1.09000 * 113.63402 * 334.55355 * 22 21 20 42 42 H 1.08999 * 113.63415 * 105.51638 * 22 21 20 43 43 H 1.08997 * 113.60390 * 270.59604 * 23 22 21 44 44 H 1.09001 * 113.60680 * 139.71903 * 23 22 21 45 45 H 1.08996 * 113.63365 * 254.41737 * 24 21 20 46 46 H 1.09003 * 113.62917 * 25.28288 * 24 21 20 47 47 H 1.09001 * 109.56455 * 186.23461 * 25 21 20 48 48 H 1.08994 * 109.56441 * 65.88706 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0800 0.9742 2.3756 7 6 1.9931 -0.4016 3.7283 8 7 2.6763 -1.5187 3.8512 9 14 1.4983 0.5628 5.2496 10 1 0.1714 0.0937 5.7232 11 1 2.5079 0.3534 6.3184 12 1 1.4226 2.0080 4.9166 13 6 2.0401 -0.7214 -1.2492 14 7 1.6514 0.0372 -2.4457 15 6 2.1258 -0.6268 -3.6671 16 6 1.7035 0.1913 -4.8892 17 1 2.0656 1.2142 -4.7863 18 6 0.1758 0.1968 -4.9993 19 6 -0.2415 0.9836 -6.2439 20 8 0.3321 0.3769 -7.4053 21 6 1.7560 0.3093 -7.3767 22 6 2.4391 1.6629 -7.6113 23 6 3.4674 0.9035 -8.4674 24 6 2.3763 -0.1558 -8.7003 25 6 2.2924 -0.4387 -6.1568 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.6053 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2057 31 1 2.9241 -1.8413 4.7318 32 1 3.1263 -0.7996 -1.2056 33 1 1.6053 -1.7199 -1.2951 34 1 0.6529 0.1792 -2.4753 35 1 3.2127 -0.7040 -3.6400 36 1 1.6920 -1.6248 -3.7299 37 1 -0.1866 -0.8280 -5.0786 38 1 -0.2508 0.6657 -4.1126 39 1 -1.3281 0.9778 -6.3299 40 1 0.1108 2.0115 -6.1591 41 1 1.8312 2.3663 -8.1803 42 1 2.8619 2.1015 -6.7074 43 1 4.3206 0.5336 -7.8988 44 1 3.7595 1.4355 -9.3728 45 1 2.7486 -1.1799 -8.6724 46 1 1.7503 0.0436 -9.5701 47 1 3.3794 -0.3628 -6.1309 48 1 1.9992 -1.4870 -6.2135 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602676508.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:25 Heat of formation + Delta-G solvation = -57.658987 kcal Electronic energy + Delta-G solvation = -22499.524100 eV Core-core repulsion = 19360.615615 eV Total energy + Delta-G solvation = -3138.908485 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.80903 -37.53378 -36.47517 -35.07520 -32.93438 -31.48113 -29.84674 -27.23481 -26.47172 -26.10179 -24.72353 -24.03259 -22.84667 -22.02008 -20.37639 -18.91566 -18.77110 -16.88188 -16.50553 -16.14144 -15.94159 -15.37357 -14.73728 -14.67706 -14.26750 -14.14530 -13.80108 -13.45198 -13.31127 -12.99150 -12.63136 -12.41394 -12.25538 -12.00325 -11.78993 -11.66901 -11.49751 -11.38801 -11.19908 -11.02182 -10.96231 -10.85942 -10.73309 -10.51524 -10.35359 -10.24152 -10.06616 -9.71226 -9.56082 -9.13544 -8.94852 -8.32557 -8.13539 -5.97159 -3.98328 3.33177 3.39521 3.43007 3.54015 4.11464 4.27038 4.40527 4.47987 4.49191 4.55149 4.65382 4.75549 4.91276 5.01963 5.22479 5.30332 5.33223 5.38601 5.43733 5.45329 5.48094 5.59370 5.61805 5.62700 5.68669 5.77015 5.79003 5.80701 5.84474 5.98638 6.01151 6.05295 6.07140 6.23126 6.28392 6.47231 6.55915 6.94800 7.09238 7.10483 7.17596 7.38111 7.65838 7.70746 7.86663 8.03170 8.46980 9.08072 9.65037 11.14408 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040233 B = 0.002604 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.784702 B =10749.062322 C =11008.904961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.691 5.691 15 C 0.064 3.936 16 C -0.086 4.086 17 H 0.082 0.918 18 C -0.153 4.153 19 C 0.063 3.937 20 O -0.370 6.370 21 C 0.093 3.907 22 C -0.163 4.163 23 C -0.139 4.139 24 C -0.123 4.123 25 C -0.119 4.119 26 H 0.063 0.937 27 H 0.030 0.970 28 H 0.040 0.960 29 H 0.014 0.986 30 H 0.015 0.985 31 H 0.259 0.741 32 H 0.066 0.934 33 H 0.023 0.977 34 H 0.337 0.663 35 H 0.070 0.930 36 H 0.026 0.974 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.051 0.949 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.088 0.912 47 H 0.077 0.923 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.873 3.410 -24.954 25.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.323 5.323 15 C -0.066 4.066 16 C -0.104 4.104 17 H 0.100 0.900 18 C -0.191 4.191 19 C -0.013 4.013 20 O -0.289 6.289 21 C 0.054 3.946 22 C -0.200 4.200 23 C -0.177 4.177 24 C -0.160 4.160 25 C -0.157 4.157 26 H 0.082 0.918 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.032 0.968 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.156 0.844 35 H 0.089 0.911 36 H 0.044 0.956 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.069 0.931 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.107 0.893 47 H 0.096 0.904 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.365 3.644 -24.931 25.233 hybrid contribution -0.725 -0.273 1.206 1.433 sum -2.089 3.372 -23.725 24.055 Atomic orbital electron populations 1.21741 0.96743 1.00408 1.00210 1.21220 0.94818 1.00083 0.94180 0.91661 1.19113 0.96137 0.95359 0.90381 1.21239 1.34570 1.08279 0.90988 0.92568 1.25026 0.95336 0.95113 0.99111 1.69967 1.39086 1.21288 1.23366 0.86626 0.78190 0.80453 0.82937 1.20759 1.21297 1.19885 1.22137 1.00321 0.94420 0.89583 1.60603 1.19589 1.50619 1.01492 1.21947 1.00443 0.94801 0.89386 1.21217 0.94908 1.00784 0.93536 0.89991 1.22245 0.96404 1.01637 0.98843 1.22517 0.98232 0.95702 0.84897 1.87923 1.19126 1.81408 1.40438 1.22681 0.80844 0.95699 0.95411 1.23522 0.98488 0.97300 1.00735 1.22721 0.96689 0.97848 1.00428 1.23009 0.96857 0.99457 0.96698 1.21864 1.00818 0.99928 0.93093 0.91842 0.95071 0.94044 0.96780 0.96664 0.93100 0.91520 0.95915 0.84387 0.91118 0.95610 0.91322 0.90422 0.89110 0.93084 0.89571 0.90932 0.89793 0.90918 0.90798 0.89294 0.90416 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.77 37.16 0.33 -2.17 16 2 C -0.08 -1.73 2.55 -90.62 -0.23 -1.96 16 3 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.41 8.41 -34.44 -0.29 -14.70 16 6 H 0.06 1.54 7.05 -52.49 -0.37 1.17 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 9 Si 0.89 21.78 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.06 1.12 5.14 -3.82 -0.02 1.10 16 14 N -0.69 -10.08 6.50 -113.78 -0.74 -10.82 16 15 C 0.06 0.78 5.16 -3.82 -0.02 0.76 16 16 C -0.09 -0.88 2.40 -90.37 -0.22 -1.10 16 17 H 0.08 0.90 7.62 -51.93 -0.40 0.51 16 18 C -0.15 -1.52 5.10 -26.62 -0.14 -1.65 16 19 C 0.06 0.59 6.74 37.18 0.25 0.84 16 20 O -0.37 -4.04 10.53 -35.23 -0.37 -4.41 16 21 C 0.09 0.86 1.16 -90.29 -0.10 0.76 16 22 C -0.16 -1.35 6.90 -26.07 -0.18 -1.53 16 23 C -0.14 -0.98 7.73 -25.85 -0.20 -1.18 16 24 C -0.12 -0.97 7.50 -26.09 -0.20 -1.17 16 25 C -0.12 -1.10 4.46 -26.66 -0.12 -1.22 16 26 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 27 H 0.03 0.48 6.68 -51.93 -0.35 0.14 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.34 4.65 5.28 -39.29 -0.21 4.44 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.76 6.76 -51.93 -0.35 0.41 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.46 7.83 -51.93 -0.41 0.05 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.61 7.56 -51.93 -0.39 0.22 16 43 H 0.08 0.55 7.61 -51.93 -0.40 0.16 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 46 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.08 0.66 7.31 -51.93 -0.38 0.28 16 48 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 364.13 15.07 5.49 5.49 Total: -1.00 -29.96 364.13 -10.34 -40.30 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -9.08 Total: 0.22 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -1.36 Total: -21.14 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.00 Total: -37.21 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: -0.37 Total: -4.41 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.96 -10.34 -40.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602676508.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.354 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds