Wall clock time and date at job start Tue Mar 31 2020 06:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46923 * 2 1 4 4 C 1.53003 * 109.47295 * 239.99876 * 2 1 3 5 5 C 1.50696 * 109.47080 * 65.00251 * 4 2 1 6 6 H 1.07999 * 120.00259 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99850 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99980 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99969 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47179 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47358 * 119.99482 * 9 7 5 12 12 H 1.48497 * 109.47106 * 240.00106 * 9 7 5 13 13 C 1.52999 * 109.47350 * 119.99614 * 2 1 3 14 14 N 1.46899 * 109.47152 * 295.00355 * 13 2 1 15 15 C 1.46900 * 110.99955 * 179.97438 * 14 13 2 16 16 C 1.53009 * 109.46919 * 179.97438 * 15 14 13 17 17 H 1.08995 * 109.55318 * 54.79847 * 16 15 14 18 18 C 1.53170 * 109.55250 * 294.49337 * 16 15 14 19 19 C 1.53047 * 109.39883 * 181.53013 * 18 16 15 20 20 O 1.43048 * 109.44523 * 59.33013 * 19 18 16 21 21 C 1.42585 * 113.84734 * 301.26067 * 20 19 18 22 22 C 1.53423 * 113.55820 * 286.13623 * 21 20 19 23 23 C 1.53843 * 86.97053 * 220.03687 * 22 21 20 24 24 C 1.53395 * 113.62891 * 188.21615 * 21 20 19 25 25 C 1.52808 * 112.93686 * 57.10713 * 21 20 19 26 26 H 1.09004 * 109.46890 * 60.00312 * 1 2 3 27 27 H 1.09006 * 109.46923 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47259 * 300.00135 * 1 2 3 29 29 H 1.09004 * 109.47082 * 184.99701 * 4 2 1 30 30 H 1.08998 * 109.46919 * 304.99484 * 4 2 1 31 31 H 0.96997 * 119.99909 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47408 * 174.99923 * 13 2 1 33 33 H 1.09005 * 109.47016 * 54.99840 * 13 2 1 34 34 H 1.00898 * 111.00357 * 56.04270 * 14 13 2 35 35 H 1.09005 * 109.47006 * 60.00406 * 15 14 13 36 36 H 1.08993 * 109.47096 * 299.99897 * 15 14 13 37 37 H 1.08999 * 109.49096 * 61.54743 * 18 16 15 38 38 H 1.08997 * 109.47956 * 301.50289 * 18 16 15 39 39 H 1.09002 * 109.47720 * 299.33496 * 19 18 16 40 40 H 1.09005 * 109.47388 * 179.32395 * 19 18 16 41 41 H 1.08999 * 113.63617 * 334.56255 * 22 21 20 42 42 H 1.09006 * 113.63075 * 105.52235 * 22 21 20 43 43 H 1.08994 * 113.60735 * 270.59623 * 23 22 21 44 44 H 1.08999 * 113.59803 * 139.72268 * 23 22 21 45 45 H 1.09000 * 113.62587 * 254.41641 * 24 21 20 46 46 H 1.09001 * 113.62529 * 25.28597 * 24 21 20 47 47 H 1.09001 * 109.56938 * 65.89388 * 25 21 20 48 48 H 1.09006 * 109.56112 * 186.11969 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0801 0.9741 -2.3758 7 6 1.9925 -0.4024 -3.7283 8 7 2.6756 -1.5194 -3.8511 9 14 1.4978 0.5620 -5.2497 10 1 0.7404 1.7731 -4.8436 11 1 2.7156 0.9667 -5.9970 12 1 0.6435 -0.2873 -6.1180 13 6 2.0400 -0.7211 1.2493 14 7 1.6513 0.0375 2.4456 15 6 2.1248 -0.6269 3.6672 16 6 1.7024 0.1913 4.8892 17 1 0.6241 0.3488 4.8677 18 6 2.4207 1.5440 4.8736 19 6 2.0251 2.3440 6.1170 20 8 2.3863 1.6099 7.2904 21 6 1.7779 0.3232 7.3755 22 6 0.2864 0.3724 7.7317 23 6 0.5445 -0.8490 8.6309 24 6 2.0061 -0.3770 8.7211 25 6 2.0856 -0.5620 6.1685 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 3.1264 -0.7994 -1.2056 30 1 1.6055 -1.7198 -1.2951 31 1 2.9223 -1.8427 -4.7317 32 1 3.1263 -0.7994 1.2056 33 1 1.6054 -1.7197 1.2953 34 1 0.6528 0.1794 2.4753 35 1 3.2117 -0.7048 3.6406 36 1 1.6904 -1.6246 3.7297 37 1 2.1348 2.0973 3.9791 38 1 3.4987 1.3831 4.8728 39 1 0.9485 2.5146 6.1120 40 1 2.5449 3.3021 6.1132 41 1 -0.0020 1.2675 8.2827 42 1 -0.3714 0.1627 6.8883 43 1 0.4247 -1.8026 8.1168 44 1 0.0140 -0.8103 9.5823 45 1 2.7312 -1.1894 8.6734 46 1 2.1944 0.3111 9.5452 47 1 3.1500 -0.7961 6.1492 48 1 1.5100 -1.4852 6.2367 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602676509.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:28 Heat of formation + Delta-G solvation = -58.053295 kcal Electronic energy + Delta-G solvation = -22479.912750 eV Core-core repulsion = 19340.987166 eV Total energy + Delta-G solvation = -3138.925584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.77804 -37.45991 -36.47128 -35.04995 -32.95457 -31.49776 -29.74924 -27.23152 -26.47079 -26.10144 -24.68456 -23.99682 -22.77740 -21.96672 -20.51548 -18.91007 -18.70989 -16.86508 -16.48971 -16.10973 -15.71824 -15.38137 -14.69893 -14.65094 -14.48656 -14.22920 -13.69047 -13.44694 -13.08291 -12.88650 -12.68070 -12.37978 -12.20026 -12.09052 -11.82335 -11.67900 -11.47948 -11.33456 -11.16444 -10.99903 -10.91351 -10.86106 -10.75393 -10.51685 -10.32821 -10.23127 -10.05651 -9.71506 -9.51759 -9.13594 -8.93982 -8.33081 -8.12557 -5.97507 -3.98540 3.32134 3.39733 3.43743 3.58412 4.11222 4.26801 4.40892 4.47827 4.49643 4.59958 4.63044 4.84734 4.99178 5.06520 5.25218 5.31947 5.37291 5.38405 5.44144 5.46449 5.50128 5.57416 5.61367 5.62929 5.76752 5.77489 5.80032 5.81370 5.92228 6.00139 6.05638 6.06476 6.18893 6.26505 6.30644 6.46953 6.56166 6.94602 7.10659 7.14124 7.17616 7.37681 7.65518 7.70781 7.86523 8.02981 8.46854 9.08141 9.64892 11.14113 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040880 B = 0.002591 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.769633 B =10803.621226 C =10961.733027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.065 3.935 14 N -0.688 5.688 15 C 0.063 3.937 16 C -0.084 4.084 17 H 0.069 0.931 18 C -0.141 4.141 19 C 0.059 3.941 20 O -0.371 6.371 21 C 0.094 3.906 22 C -0.163 4.163 23 C -0.140 4.140 24 C -0.123 4.123 25 C -0.120 4.120 26 H 0.062 0.938 27 H 0.040 0.960 28 H 0.031 0.969 29 H 0.015 0.985 30 H 0.014 0.986 31 H 0.259 0.741 32 H 0.066 0.934 33 H 0.022 0.978 34 H 0.336 0.664 35 H 0.070 0.930 36 H 0.025 0.975 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.047 0.953 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.074 0.926 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.493 2.471 24.927 25.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.320 5.320 15 C -0.066 4.066 16 C -0.102 4.102 17 H 0.087 0.913 18 C -0.179 4.179 19 C -0.017 4.017 20 O -0.290 6.290 21 C 0.055 3.945 22 C -0.200 4.200 23 C -0.177 4.177 24 C -0.160 4.160 25 C -0.158 4.158 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.033 0.967 30 H 0.032 0.968 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.040 0.960 34 H 0.155 0.845 35 H 0.089 0.911 36 H 0.043 0.957 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.107 0.893 47 H 0.093 0.907 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.748 2.852 24.894 25.207 hybrid contribution -0.984 -0.456 -1.178 1.602 sum -3.732 2.395 23.716 24.127 Atomic orbital electron populations 1.21738 0.96741 1.00374 1.00235 1.21215 0.94808 1.00071 0.94162 0.91664 1.19117 0.96136 0.95361 0.90418 1.21276 1.34500 1.08245 0.90972 0.92517 1.25030 0.95360 0.95104 0.99130 1.69974 1.39188 1.21269 1.23263 0.86574 0.78262 0.80115 0.83284 1.19751 1.21070 1.21132 1.22131 1.00306 0.94383 0.89578 1.60567 1.19387 1.50563 1.01454 1.21965 1.00656 0.94596 0.89405 1.21182 1.00110 0.95506 0.93443 0.91277 1.22110 1.01046 0.96090 0.98648 1.22609 0.99457 0.94836 0.84803 1.87922 1.70792 1.27943 1.42308 1.22649 0.92452 0.84465 0.94980 1.23521 0.97271 0.99060 1.00185 1.22718 0.96585 0.98048 1.00359 1.23008 0.97123 0.99515 0.96388 1.21873 1.02578 0.98049 0.93297 0.91874 0.94092 0.95008 0.96678 0.96792 0.93157 0.91545 0.95952 0.84545 0.91125 0.95652 0.89367 0.91332 0.93424 0.89131 0.89550 0.91174 0.89885 0.90930 0.90791 0.89269 0.90722 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.77 37.16 0.33 -2.15 16 2 C -0.08 -1.70 2.54 -90.62 -0.23 -1.93 16 3 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.36 8.41 -34.44 -0.29 -14.65 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.06 1.12 5.14 -3.83 -0.02 1.10 16 14 N -0.69 -9.80 6.01 -113.77 -0.68 -10.49 16 15 C 0.06 0.76 5.08 -3.82 -0.02 0.74 16 16 C -0.08 -0.85 2.33 -90.36 -0.21 -1.07 16 17 H 0.07 0.70 7.61 -51.93 -0.40 0.31 16 18 C -0.14 -1.50 5.24 -26.62 -0.14 -1.64 16 19 C 0.06 0.59 6.74 37.18 0.25 0.84 16 20 O -0.37 -4.16 10.53 -35.23 -0.37 -4.53 16 21 C 0.09 0.88 1.16 -90.30 -0.10 0.78 16 22 C -0.16 -1.34 6.90 -26.07 -0.18 -1.52 16 23 C -0.14 -0.98 7.73 -25.85 -0.20 -1.18 16 24 C -0.12 -0.98 7.50 -26.09 -0.20 -1.18 16 25 C -0.12 -1.11 4.46 -26.66 -0.12 -1.23 16 26 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.03 0.49 6.68 -51.93 -0.35 0.14 16 29 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.34 4.55 6.98 -39.29 -0.27 4.28 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.09 1.01 7.82 -51.93 -0.41 0.61 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.44 7.83 -51.93 -0.41 0.04 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.57 7.56 -51.93 -0.39 0.18 16 43 H 0.08 0.54 7.61 -51.93 -0.40 0.14 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 46 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.07 0.62 7.31 -51.93 -0.38 0.24 16 LS Contribution 366.41 15.07 5.52 5.52 Total: -1.00 -29.77 366.41 -10.37 -40.14 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -9.20 Total: 0.02 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -1.35 Total: -21.04 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.05 Total: -36.85 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.37 Total: -4.53 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.77 -10.37 -40.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602676509.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.914 kcal (2) G-P(sol) polarization free energy of solvation -29.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds