Wall clock time and date at job start Tue Mar 31 2020 06:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 113.99845 * 2 1 4 4 H 1.08999 * 112.94928 * 18.58846 * 3 2 1 5 5 C 1.53953 * 113.65868 * 247.18504 * 3 2 1 6 6 C 1.53951 * 87.29348 * 270.25986 * 5 3 2 7 7 H 1.09006 * 113.65794 * 89.74093 * 6 5 3 8 8 N 1.46896 * 113.65971 * 220.79443 * 6 5 3 9 9 C 1.46905 * 111.00268 * 293.12379 * 8 6 5 10 10 C 1.46901 * 110.99898 * 169.17246 * 8 6 5 11 11 C 1.52997 * 109.47153 * 192.54104 * 10 8 6 12 12 H 1.08999 * 109.46909 * 305.00092 * 11 10 8 13 13 C 1.53003 * 109.46940 * 65.00258 * 11 10 8 14 14 C 1.53004 * 109.46845 * 184.99955 * 11 10 8 15 15 C 1.50698 * 109.46700 * 175.00097 * 14 11 10 16 16 H 1.08002 * 120.00174 * 0.02562 * 15 14 11 17 17 C 1.37879 * 120.00071 * 179.97438 * 15 14 11 18 18 N 1.31522 * 119.99656 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00254 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47093 * 90.00102 * 19 17 15 21 21 H 1.48503 * 109.47094 * 210.00237 * 19 17 15 22 22 H 1.48497 * 109.47116 * 329.99781 * 19 17 15 23 23 C 1.52902 * 113.66134 * 150.00016 * 3 2 1 24 24 C 1.52904 * 121.13762 * 323.84759 * 23 3 2 25 25 C 1.53948 * 86.88784 * 259.13635 * 24 23 3 26 26 C 1.52911 * 121.13500 * 215.28960 * 23 3 2 27 27 H 1.09000 * 109.47187 * 300.00375 * 1 2 3 28 28 H 1.08996 * 109.47074 * 60.00620 * 1 2 3 29 29 H 1.09000 * 109.47103 * 180.02562 * 1 2 3 30 30 H 1.09001 * 113.57570 * 155.65257 * 5 3 2 31 31 H 1.08998 * 113.57636 * 24.86897 * 5 3 2 32 32 H 1.09007 * 109.46465 * 54.04489 * 9 8 6 33 33 H 1.08999 * 109.47369 * 174.04027 * 9 8 6 34 34 H 1.08993 * 109.47015 * 294.04712 * 9 8 6 35 35 H 1.09000 * 109.47244 * 312.54229 * 10 8 6 36 36 H 1.09004 * 109.46901 * 72.54300 * 10 8 6 37 37 H 1.09006 * 109.46619 * 179.97438 * 13 11 10 38 38 H 1.08999 * 109.46896 * 299.99677 * 13 11 10 39 39 H 1.08992 * 109.47141 * 59.99926 * 13 11 10 40 40 H 1.08994 * 109.47126 * 294.99751 * 14 11 10 41 41 H 1.08996 * 109.47024 * 55.00435 * 14 11 10 42 42 H 0.96998 * 119.99484 * 179.97438 * 18 17 15 43 43 H 1.09002 * 113.66779 * 13.65329 * 24 23 3 44 44 H 1.09000 * 113.66236 * 144.61873 * 24 23 3 45 45 H 1.09004 * 113.58213 * 89.91409 * 25 24 23 46 46 H 1.09001 * 113.58300 * 220.71291 * 25 24 23 47 47 H 1.09005 * 113.66361 * 215.29579 * 26 23 3 48 48 H 1.09003 * 113.65874 * 346.25256 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3140 2.0807 0.3200 5 6 2.7611 1.6475 -1.2998 6 6 4.0189 1.0486 -0.6447 7 1 4.1401 -0.0194 -0.8259 8 7 5.2431 1.8168 -0.9077 9 6 5.6086 1.7546 -2.3292 10 6 6.3486 1.3522 -0.0591 11 6 7.5002 2.3572 -0.1262 12 1 7.7864 2.5128 -1.1664 13 6 7.0528 3.6870 0.4841 14 6 8.6974 1.8140 0.6565 15 6 9.8709 2.7444 0.4890 16 1 9.7726 3.6344 -0.1149 17 6 11.0699 2.4601 1.1076 18 7 11.1895 1.3766 1.8435 19 14 12.5244 3.6138 0.9007 20 1 12.4988 4.6400 1.9736 21 1 13.7878 2.8381 0.9876 22 1 12.4430 4.2803 -0.4239 23 6 3.3678 1.3728 0.7002 24 6 3.6591 0.5310 1.9430 25 6 3.4025 1.8073 2.7648 26 6 3.7832 2.6064 1.5028 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 2.8365 2.7180 -1.4909 31 1 2.4111 1.0861 -2.1661 32 1 4.7603 2.0703 -2.9365 33 1 6.4551 2.4154 -2.5159 34 1 5.8815 0.7320 -2.5897 35 1 6.0034 1.2634 0.9710 36 1 6.6936 0.3802 -0.4118 37 1 7.8734 4.4029 0.4367 38 1 6.1999 4.0739 -0.0735 39 1 6.7665 3.5313 1.5242 40 1 8.4385 1.7422 1.7128 41 1 8.9603 0.8259 0.2788 42 1 12.0331 1.1764 2.2784 43 1 2.9270 -0.2571 2.1191 44 1 4.6875 0.1743 1.9986 45 1 2.3614 1.9324 3.0625 46 1 4.0989 1.9402 3.5927 47 1 4.8470 2.8343 1.4354 48 1 3.1512 3.4766 1.3257 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602679120.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:08 Heat of formation + Delta-G solvation = -7.770987 kcal Electronic energy + Delta-G solvation = -23680.586332 eV Core-core repulsion = 20543.841153 eV Total energy + Delta-G solvation = -3136.745179 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.90696 -37.46705 -36.64493 -34.73899 -33.00510 -31.59217 -27.15630 -27.04004 -26.62898 -25.45763 -25.25159 -24.28612 -23.20837 -21.74674 -20.38224 -18.93929 -18.00084 -16.65229 -16.27874 -15.85550 -15.73235 -15.37782 -14.80766 -14.43235 -14.16832 -14.10608 -13.80534 -13.03453 -12.70276 -12.57821 -12.33016 -12.27218 -12.09481 -11.92029 -11.72673 -11.69275 -11.32490 -11.23972 -11.13270 -10.87871 -10.74381 -10.65327 -10.47317 -10.24829 -10.12881 -9.97645 -9.83800 -9.42915 -9.37201 -9.06248 -8.87699 -8.29017 -7.91541 -5.93981 -3.94801 3.35169 3.41415 3.43358 3.44720 4.25278 4.51377 4.51575 4.55020 4.74458 4.89049 4.93711 4.98493 5.11998 5.15412 5.25379 5.41664 5.41999 5.47240 5.54638 5.60265 5.72669 5.77441 5.83594 5.89021 5.99457 6.02471 6.02918 6.12551 6.18123 6.19471 6.25497 6.30879 6.47320 6.53899 6.61642 6.69083 6.76441 7.06448 7.10415 7.19941 7.27127 7.52059 7.54914 7.74682 7.91156 8.06893 8.51212 9.11774 9.68353 11.17558 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.030196 B = 0.003815 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.058217 B = 7337.087161 C = 7692.407092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.365 6.365 3 C 0.086 3.914 4 H 0.074 0.926 5 C -0.142 4.142 6 C 0.074 3.926 7 H 0.063 0.937 8 N -0.523 5.523 9 C 0.025 3.975 10 C 0.057 3.943 11 C -0.080 4.080 12 H 0.055 0.945 13 C -0.123 4.123 14 C 0.028 3.972 15 C -0.511 4.511 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.274 1.274 23 C -0.090 4.090 24 C -0.125 4.125 25 C -0.145 4.145 26 C -0.103 4.103 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.019 0.981 35 H 0.072 0.928 36 H 0.025 0.975 37 H 0.052 0.948 38 H 0.043 0.957 39 H 0.039 0.961 40 H 0.015 0.985 41 H 0.011 0.989 42 H 0.259 0.741 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.109 0.891 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.442 -0.288 -3.568 21.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.027 3.973 4 H 0.092 0.908 5 C -0.180 4.180 6 C -0.034 4.034 7 H 0.081 0.919 8 N -0.247 5.247 9 C -0.123 4.123 10 C -0.070 4.070 11 C -0.099 4.099 12 H 0.073 0.927 13 C -0.180 4.180 14 C -0.010 4.010 15 C -0.549 4.549 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.214 1.214 22 H -0.199 1.199 23 C -0.090 4.090 24 C -0.162 4.162 25 C -0.183 4.183 26 C -0.141 4.141 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.038 0.962 35 H 0.090 0.910 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.033 0.967 41 H 0.029 0.971 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.102 0.898 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.127 0.873 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.299 -0.070 -3.353 21.561 hybrid contribution 0.870 -0.212 -0.318 0.950 sum -20.429 -0.281 -3.671 20.758 Atomic orbital electron populations 1.22788 0.81265 1.02582 0.99848 1.87888 1.19284 1.26639 1.94520 1.22702 0.93288 0.84741 0.96521 0.90804 1.23473 0.95842 1.01903 0.96817 1.22804 0.89460 0.95464 0.95712 0.91893 1.62236 1.03677 1.53725 1.05034 1.22337 1.01116 0.99819 0.89025 1.22392 0.90965 0.96805 0.96870 1.21201 0.94218 0.94343 1.00112 0.92674 1.21620 0.99721 0.97590 0.99067 1.19117 0.91002 0.95910 0.94968 1.21240 0.95874 1.08056 1.29725 0.92614 1.25020 0.98752 0.95297 0.95490 1.69973 1.25618 1.25407 1.32700 0.86647 0.82296 0.80916 0.78460 1.20743 1.21367 1.19940 1.22724 0.94066 0.99211 0.93033 1.22676 1.01947 0.96605 0.94979 1.22916 1.00900 0.97095 0.97376 1.22723 1.03542 0.94555 0.93243 0.94096 0.94142 0.89739 0.88560 0.91409 0.92298 0.90870 0.96212 0.90978 0.95639 0.92865 0.93784 0.94235 0.96680 0.97068 0.93155 0.91313 0.89780 0.91028 0.91342 0.87256 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.85 101.05 1.10 1.35 16 2 O -0.37 -4.24 10.20 -35.23 -0.36 -4.60 16 3 C 0.09 0.96 4.17 -26.28 -0.11 0.85 16 4 H 0.07 0.73 7.87 -51.93 -0.41 0.32 16 5 C -0.14 -1.62 6.76 -25.75 -0.17 -1.79 16 6 C 0.07 1.01 3.00 -67.27 -0.20 0.81 16 7 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 8 N -0.52 -7.83 3.57 -234.34 -0.84 -8.66 16 9 C 0.03 0.36 9.25 60.07 0.56 0.91 16 10 C 0.06 1.01 3.68 -3.82 -0.01 0.99 16 11 C -0.08 -1.64 2.30 -90.62 -0.21 -1.85 16 12 H 0.05 1.16 6.47 -51.93 -0.34 0.82 16 13 C -0.12 -2.35 7.90 37.16 0.29 -2.06 16 14 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 15 C -0.51 -14.38 8.41 -34.44 -0.29 -14.67 16 16 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 17 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 19 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 C -0.09 -1.13 0.62 -154.72 -0.10 -1.22 16 24 C -0.12 -1.61 7.38 -26.29 -0.19 -1.81 16 25 C -0.15 -1.72 8.10 -25.64 -0.21 -1.93 16 26 C -0.10 -1.32 7.13 -26.18 -0.19 -1.50 16 27 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.72 7.37 -51.92 -0.38 0.33 16 33 H 0.07 1.09 6.55 -51.93 -0.34 0.75 16 34 H 0.02 0.28 8.10 -51.93 -0.42 -0.14 16 35 H 0.07 1.28 4.75 -51.93 -0.25 1.04 16 36 H 0.03 0.48 8.07 -51.93 -0.42 0.06 16 37 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 38 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 39 H 0.04 0.74 7.24 -51.93 -0.38 0.37 16 40 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.07 0.87 7.83 -51.93 -0.41 0.47 16 44 H 0.08 1.20 6.87 -51.93 -0.36 0.84 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.11 1.62 4.23 -51.93 -0.22 1.40 16 48 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 362.33 15.07 5.46 5.46 Total: -1.00 -29.87 362.33 -8.81 -38.68 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -8.83 Total: -1.41 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: 0.04 Total: -19.85 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: -0.10 Total: -35.13 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.36 Total: -4.60 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.87 -8.81 -38.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602679120.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.909 kcal (2) G-P(sol) polarization free energy of solvation -29.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds