Wall clock time and date at job start Tue Mar 31 2020 06:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99775 * 2 1 4 4 H 1.08996 * 112.88614 * 21.84711 * 3 2 1 5 5 C 1.53943 * 113.66473 * 250.49514 * 3 2 1 6 6 C 1.53952 * 87.29665 * 220.70406 * 5 3 2 7 7 H 1.09004 * 113.66353 * 270.16954 * 6 5 3 8 8 N 1.46898 * 113.66437 * 139.20924 * 6 5 3 9 9 C 1.46896 * 111.00352 * 182.55659 * 8 6 5 10 10 C 1.46906 * 111.00185 * 58.59785 * 8 6 5 11 11 C 1.52991 * 109.47315 * 190.00140 * 10 8 6 12 12 H 1.09005 * 109.47180 * 305.00292 * 11 10 8 13 13 C 1.52999 * 109.47362 * 65.00375 * 11 10 8 14 14 C 1.53001 * 109.47282 * 185.00316 * 11 10 8 15 15 C 1.50695 * 109.47344 * 174.99734 * 14 11 10 16 16 H 1.08001 * 120.00196 * 0.02562 * 15 14 11 17 17 C 1.37880 * 120.00133 * 179.97438 * 15 14 11 18 18 N 1.31512 * 120.00085 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00232 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.46938 * 60.00323 * 19 17 15 21 21 H 1.48500 * 109.47280 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47341 * 300.00916 * 19 17 15 23 23 C 1.52906 * 86.88366 * 24.68969 * 6 5 3 24 24 C 1.52903 * 121.14149 * 209.42492 * 23 6 5 25 25 C 1.53951 * 86.78286 * 209.37603 * 24 23 6 26 26 C 1.52907 * 121.13566 * 100.85935 * 23 6 5 27 27 H 1.09002 * 109.47480 * 59.99517 * 1 2 3 28 28 H 1.08999 * 109.46898 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46771 * 299.99718 * 1 2 3 30 30 H 1.09002 * 113.58260 * 106.10316 * 5 3 2 31 31 H 1.09002 * 113.65558 * 335.31856 * 5 3 2 32 32 H 1.09001 * 109.47307 * 290.28750 * 9 8 6 33 33 H 1.08999 * 109.47112 * 50.28325 * 9 8 6 34 34 H 1.09003 * 109.47283 * 170.29094 * 9 8 6 35 35 H 1.09001 * 109.46638 * 70.00132 * 10 8 6 36 36 H 1.08994 * 109.47374 * 310.00911 * 10 8 6 37 37 H 1.09001 * 109.47481 * 180.02562 * 13 11 10 38 38 H 1.08996 * 109.47006 * 59.99637 * 13 11 10 39 39 H 1.09005 * 109.46975 * 299.99906 * 13 11 10 40 40 H 1.08993 * 109.47508 * 295.00245 * 14 11 10 41 41 H 1.09008 * 109.47263 * 55.00060 * 14 11 10 42 42 H 0.96998 * 120.00601 * 179.97438 * 18 17 15 43 43 H 1.08995 * 113.66575 * 323.85140 * 24 23 6 44 44 H 1.09001 * 113.66471 * 94.90475 * 24 23 6 45 45 H 1.08997 * 113.58449 * 270.12915 * 25 24 23 46 46 H 1.09006 * 113.57990 * 139.34001 * 25 24 23 47 47 H 1.08997 * 113.66384 * 265.09596 * 26 23 6 48 48 H 1.09001 * 113.66602 * 36.06636 * 26 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3311 2.0718 0.3737 5 6 2.6916 1.6786 -1.3291 6 6 3.8146 2.3155 -0.4904 7 1 3.6433 3.3662 -0.2560 8 7 5.1616 2.0601 -1.0179 9 6 6.1885 2.6409 -0.1428 10 6 5.2936 2.5645 -2.3913 11 6 6.6090 2.0664 -2.9933 12 1 7.4368 2.3518 -2.3440 13 6 6.5654 0.5427 -3.1243 14 6 6.8062 2.6916 -4.3757 15 6 8.1570 2.2992 -4.9165 16 1 8.8094 1.6666 -4.3328 17 6 8.5595 2.7466 -6.1570 18 7 7.7650 3.5164 -6.8680 19 14 10.2336 2.2596 -6.8276 20 1 10.3117 0.7806 -6.9371 21 1 10.4250 2.8665 -8.1693 22 1 11.2950 2.7446 -5.9093 23 6 3.4038 1.3615 0.6317 24 6 3.5930 1.7406 2.1008 25 6 3.7501 0.2346 2.3792 26 6 4.1962 0.0845 0.9134 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.1274 2.3991 -1.9212 31 1 3.0173 0.8161 -1.9107 32 1 6.1486 3.7283 -0.2076 33 1 6.0063 2.3315 0.8864 34 1 7.1728 2.2942 -0.4577 35 1 5.2888 3.6544 -2.3801 36 1 4.4592 2.2038 -2.9926 37 1 7.5027 0.1878 -3.5527 38 1 5.7376 0.2574 -3.7735 39 1 6.4249 0.0972 -2.1394 40 1 6.0275 2.3356 -5.0501 41 1 6.7486 3.7772 -4.2952 42 1 8.0483 3.8316 -7.7406 43 1 4.4982 2.3173 2.2907 44 1 2.7058 2.1796 2.5572 45 1 2.8091 -0.2681 2.6024 46 1 4.5350 0.0039 3.0997 47 1 3.7909 -0.7995 0.4212 48 1 5.2708 0.1954 0.7681 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602679122.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:13 Heat of formation + Delta-G solvation = -9.839849 kcal Electronic energy + Delta-G solvation = -23415.633600 eV Core-core repulsion = 20278.798708 eV Total energy + Delta-G solvation = -3136.834892 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.88149 -37.40938 -36.80736 -34.57515 -33.14289 -31.70123 -27.15939 -27.12468 -26.43037 -25.70939 -25.07610 -24.39175 -23.11215 -21.75122 -20.43906 -18.74890 -18.14641 -16.83270 -16.32100 -15.85974 -15.77577 -15.29494 -14.75440 -14.54018 -14.21667 -14.00205 -13.92412 -13.11672 -12.80918 -12.50215 -12.36005 -12.19521 -12.02639 -11.98617 -11.77800 -11.55979 -11.33270 -11.23610 -11.08917 -11.02134 -10.80714 -10.68986 -10.42845 -10.24165 -10.15818 -10.12997 -9.88835 -9.55264 -9.36825 -9.05752 -8.89141 -8.28671 -7.93431 -5.93830 -3.94679 3.36926 3.41058 3.43770 3.57687 4.26406 4.47260 4.47946 4.53671 4.63752 4.75628 4.77840 4.90992 5.08722 5.21452 5.29005 5.39260 5.41881 5.44595 5.47812 5.58097 5.62672 5.68580 5.80524 5.85723 5.87912 5.88993 5.97801 6.06647 6.17513 6.21138 6.29300 6.32513 6.45688 6.50544 6.56996 6.61638 6.78796 7.09650 7.15026 7.21550 7.27560 7.49979 7.51902 7.74185 7.91222 8.06909 8.51386 9.11632 9.68401 11.17736 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028001 B = 0.003572 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.734388 B = 7836.554999 C = 8216.228508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.085 3.915 4 H 0.084 0.916 5 C -0.142 4.142 6 C 0.068 3.932 7 H 0.061 0.939 8 N -0.517 5.517 9 C 0.023 3.977 10 C 0.061 3.939 11 C -0.080 4.080 12 H 0.055 0.945 13 C -0.121 4.121 14 C 0.028 3.972 15 C -0.511 4.511 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.085 4.085 24 C -0.130 4.130 25 C -0.140 4.140 26 C -0.090 4.090 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.037 0.963 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.020 0.980 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.025 0.975 36 H 0.069 0.931 37 H 0.051 0.949 38 H 0.038 0.962 39 H 0.042 0.958 40 H 0.015 0.985 41 H 0.011 0.989 42 H 0.259 0.741 43 H 0.082 0.918 44 H 0.060 0.940 45 H 0.076 0.924 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.196 -4.077 17.912 22.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C 0.027 3.973 4 H 0.101 0.899 5 C -0.180 4.180 6 C -0.041 4.041 7 H 0.079 0.921 8 N -0.241 5.241 9 C -0.125 4.125 10 C -0.066 4.066 11 C -0.099 4.099 12 H 0.073 0.927 13 C -0.178 4.178 14 C -0.010 4.010 15 C -0.550 4.550 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.085 4.085 24 C -0.167 4.167 25 C -0.178 4.178 26 C -0.128 4.128 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.120 0.880 32 H 0.039 0.961 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.044 0.956 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.033 0.967 41 H 0.029 0.971 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.079 0.921 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.028 -4.657 17.724 22.485 hybrid contribution 0.514 1.107 -0.545 1.336 sum -12.514 -3.551 17.179 21.548 Atomic orbital electron populations 1.22758 0.81716 1.02518 0.99672 1.87962 1.18980 1.27141 1.94537 1.23296 0.92527 0.84928 0.96582 0.89865 1.23513 0.96318 1.01540 0.96668 1.22603 0.89611 0.96123 0.95764 0.92130 1.62144 1.01041 1.58330 1.02585 1.22412 0.96640 0.96725 0.96701 1.22324 1.00220 0.96498 0.87578 1.21198 0.93828 0.96015 0.98828 0.92681 1.21566 1.00981 0.95781 0.99518 1.19114 0.96764 0.95322 0.89781 1.21208 1.01663 1.30251 1.01845 0.92652 1.25014 0.97093 0.95317 0.97106 1.69955 1.36457 1.35034 1.12328 0.86703 0.84733 0.78792 0.78030 1.20258 1.21412 1.20349 1.22806 0.94517 0.98132 0.93085 1.22822 1.01468 0.96985 0.95476 1.22837 1.01202 0.96032 0.97690 1.22289 1.00077 0.96076 0.94315 0.94131 0.89869 0.94403 0.91556 0.88043 0.96103 0.92146 0.90800 0.95642 0.91266 0.92961 0.94322 0.93864 0.96671 0.97092 0.93098 0.89955 0.92086 0.90557 0.92003 0.91032 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.86 101.05 1.10 1.35 16 2 O -0.37 -4.30 9.92 -35.23 -0.35 -4.64 16 3 C 0.09 0.94 4.17 -26.18 -0.11 0.83 16 4 H 0.08 0.79 7.90 -51.93 -0.41 0.38 16 5 C -0.14 -1.78 6.34 -25.75 -0.16 -1.95 16 6 C 0.07 0.87 3.06 -67.27 -0.21 0.66 16 7 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 8 N -0.52 -7.63 3.43 -234.35 -0.80 -8.43 16 9 C 0.02 0.32 8.81 60.06 0.53 0.85 16 10 C 0.06 1.07 4.23 -3.83 -0.02 1.06 16 11 C -0.08 -1.65 2.25 -90.62 -0.20 -1.86 16 12 H 0.05 1.16 6.46 -51.93 -0.34 0.82 16 13 C -0.12 -2.40 8.89 37.16 0.33 -2.07 16 14 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 15 C -0.51 -14.49 8.41 -34.44 -0.29 -14.78 16 16 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 19 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C -0.08 -0.96 0.77 -154.61 -0.12 -1.08 16 24 C -0.13 -1.29 7.67 -26.29 -0.20 -1.49 16 25 C -0.14 -1.41 8.08 -25.75 -0.21 -1.61 16 26 C -0.09 -1.07 7.11 -26.28 -0.19 -1.26 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.10 1.47 8.03 -51.93 -0.42 1.05 16 32 H 0.02 0.29 8.07 -51.93 -0.42 -0.13 16 33 H 0.06 0.72 5.99 -51.93 -0.31 0.41 16 34 H 0.07 1.09 6.65 -51.93 -0.35 0.74 16 35 H 0.03 0.46 8.06 -51.93 -0.42 0.05 16 36 H 0.07 1.23 6.88 -51.93 -0.36 0.88 16 37 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 40 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.08 0.80 6.95 -51.93 -0.36 0.44 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.94 7.66 -51.93 -0.40 0.55 16 48 H 0.09 1.17 6.95 -51.93 -0.36 0.80 16 LS Contribution 367.30 15.07 5.54 5.54 Total: -1.00 -29.95 367.30 -8.92 -38.87 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -9.05 Total: -2.45 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 0.03 Total: -19.25 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: -0.07 Total: -34.97 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.35 Total: -4.64 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.95 -8.92 -38.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602679122.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.031 kcal (2) G-P(sol) polarization free energy of solvation -29.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds