Wall clock time and date at job start Tue Mar 31 2020 06:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00047 * 2 1 4 4 H 1.09004 * 112.88815 * 21.84218 * 3 2 1 5 5 C 1.53951 * 113.66350 * 250.49510 * 3 2 1 6 6 C 1.53956 * 87.29682 * 220.70264 * 5 3 2 7 7 H 1.08997 * 113.66014 * 139.29770 * 6 5 3 8 8 N 1.46904 * 113.65806 * 270.26199 * 6 5 3 9 9 C 1.46900 * 110.99629 * 184.50415 * 8 6 5 10 10 C 1.46896 * 110.99756 * 308.45770 * 8 6 5 11 11 C 1.53011 * 109.46644 * 170.00572 * 10 8 6 12 12 H 1.08991 * 109.47077 * 54.99736 * 11 10 8 13 13 C 1.53005 * 109.46538 * 294.99636 * 11 10 8 14 14 C 1.52997 * 109.46957 * 175.00034 * 11 10 8 15 15 C 1.50699 * 109.47218 * 184.99640 * 14 11 10 16 16 H 1.07999 * 119.99907 * 359.97438 * 15 14 11 17 17 C 1.37875 * 119.99997 * 179.72284 * 15 14 11 18 18 N 1.31513 * 120.00310 * 0.27708 * 17 15 14 19 19 Si 1.86798 * 119.99817 * 180.27478 * 17 15 14 20 20 H 1.48506 * 109.47213 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47385 * 120.00045 * 19 17 15 22 22 H 1.48499 * 109.47142 * 239.99948 * 19 17 15 23 23 C 1.52910 * 86.78100 * 24.73304 * 6 5 3 24 24 C 1.52911 * 121.14188 * 209.38299 * 23 6 5 25 25 C 1.53953 * 86.78327 * 209.37981 * 24 23 6 26 26 C 1.52903 * 121.13921 * 100.81955 * 23 6 5 27 27 H 1.09004 * 109.46970 * 300.00064 * 1 2 3 28 28 H 1.08996 * 109.47094 * 59.99627 * 1 2 3 29 29 H 1.08995 * 109.47237 * 180.02562 * 1 2 3 30 30 H 1.08993 * 113.58016 * 106.09471 * 5 3 2 31 31 H 1.09001 * 113.64957 * 335.31056 * 5 3 2 32 32 H 1.08997 * 109.47043 * 190.13531 * 9 8 6 33 33 H 1.09003 * 109.47148 * 310.13233 * 9 8 6 34 34 H 1.09000 * 109.46993 * 70.13502 * 9 8 6 35 35 H 1.08991 * 109.47571 * 50.00675 * 10 8 6 36 36 H 1.09005 * 109.47277 * 289.99484 * 10 8 6 37 37 H 1.08997 * 109.47133 * 60.00622 * 13 11 10 38 38 H 1.09001 * 109.46647 * 180.02562 * 13 11 10 39 39 H 1.08995 * 109.47052 * 299.99782 * 13 11 10 40 40 H 1.09006 * 109.47447 * 64.99358 * 14 11 10 41 41 H 1.09004 * 109.47273 * 304.99526 * 14 11 10 42 42 H 0.97003 * 120.00196 * 180.02562 * 18 17 15 43 43 H 1.09002 * 113.65799 * 323.85022 * 24 23 6 44 44 H 1.09002 * 113.66462 * 94.90139 * 24 23 6 45 45 H 1.08996 * 113.57674 * 270.13144 * 25 24 23 46 46 H 1.08998 * 113.58195 * 139.34117 * 25 24 23 47 47 H 1.09003 * 113.66101 * 265.09737 * 26 23 6 48 48 H 1.09009 * 113.66508 * 36.05450 * 26 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3311 2.0719 0.3736 5 6 2.6917 1.6784 -1.3291 6 6 3.8147 2.3154 -0.4905 7 1 4.8141 2.1271 -0.8828 8 7 3.5829 3.7308 -0.1729 9 6 4.7344 4.3070 0.5342 10 6 3.2720 4.4985 -1.3861 11 6 2.7956 5.8990 -0.9953 12 1 3.5440 6.3733 -0.3606 13 6 1.4731 5.7935 -0.2330 14 6 2.5910 6.7388 -2.2576 15 6 2.2409 8.1522 -1.8694 16 1 2.1708 8.4242 -0.8266 17 6 2.0150 9.0994 -2.8455 18 7 2.0998 8.7682 -4.1155 19 14 1.5885 10.8532 -2.3642 20 1 1.5564 10.9664 -0.8838 21 1 2.6138 11.7793 -2.9088 22 1 0.2570 11.2084 -2.9174 23 6 3.4027 1.3595 0.6296 24 6 3.5916 1.7357 2.0996 25 6 3.7475 0.2292 2.3753 26 6 4.1940 0.0815 0.9095 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 2.1274 2.3988 -1.9213 31 1 3.0174 0.8159 -1.9106 32 1 4.4704 5.2937 0.9147 33 1 5.0116 3.6591 1.3657 34 1 5.5755 4.3958 -0.1533 35 1 2.4868 3.9908 -1.9461 36 1 4.1660 4.5783 -2.0046 37 1 1.6189 5.1952 0.6664 38 1 1.1335 6.7912 0.0451 39 1 0.7248 5.3191 -0.8678 40 1 1.7808 6.3133 -2.8498 41 1 3.5088 6.7404 -2.8458 42 1 1.9413 9.4347 -4.8022 43 1 4.4972 2.3115 2.2909 44 1 2.7045 2.1747 2.5564 45 1 2.8060 -0.2732 2.5971 46 1 4.5318 -0.0035 3.0956 47 1 3.7881 -0.8013 0.4154 48 1 5.2688 0.1917 0.7647 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602679123.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:16 Heat of formation + Delta-G solvation = -5.116457 kcal Electronic energy + Delta-G solvation = -23517.651638 eV Core-core repulsion = 20381.021568 eV Total energy + Delta-G solvation = -3136.630070 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.91713 -37.38151 -36.86871 -34.62256 -32.99483 -31.71259 -27.27271 -27.05063 -26.50674 -25.65783 -24.94141 -24.41481 -23.32316 -22.09334 -20.19252 -18.76635 -18.10282 -16.88241 -16.32217 -15.83812 -15.70754 -15.31861 -14.79682 -14.53705 -14.33290 -14.18313 -13.46778 -13.14241 -12.78701 -12.58844 -12.46291 -12.26661 -12.11663 -12.06036 -11.85330 -11.46701 -11.41763 -11.18502 -11.07793 -10.89594 -10.84689 -10.72732 -10.43752 -10.29347 -10.15875 -10.11410 -9.89790 -9.59240 -9.26920 -9.10053 -8.91356 -8.32229 -7.94953 -5.96926 -3.97849 3.32177 3.39870 3.43854 3.70577 4.03746 4.43431 4.48807 4.55718 4.74933 4.79506 4.81731 4.96658 5.24582 5.32711 5.35230 5.39057 5.44734 5.48711 5.53791 5.58964 5.64923 5.69596 5.74091 5.81346 5.92132 5.94862 5.95937 5.99797 6.08866 6.11969 6.19021 6.26427 6.40269 6.45606 6.52784 6.56116 6.72079 7.03855 7.14521 7.21718 7.24180 7.45274 7.46963 7.71177 7.87059 8.03639 8.47957 9.08868 9.65598 11.14651 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026473 B = 0.003711 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.444528 B = 7542.883926 C = 7923.662854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.099 3.901 4 H 0.096 0.904 5 C -0.157 4.157 6 C 0.071 3.929 7 H 0.054 0.946 8 N -0.518 5.518 9 C 0.023 3.977 10 C 0.056 3.944 11 C -0.080 4.080 12 H 0.056 0.944 13 C -0.121 4.121 14 C 0.027 3.973 15 C -0.511 4.511 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.085 4.085 24 C -0.117 4.117 25 C -0.139 4.139 26 C -0.110 4.110 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.022 0.978 35 H 0.073 0.927 36 H 0.028 0.972 37 H 0.041 0.959 38 H 0.053 0.947 39 H 0.037 0.963 40 H 0.015 0.985 41 H 0.012 0.988 42 H 0.258 0.742 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.061 0.939 47 H 0.074 0.926 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.876 -18.107 10.459 20.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C 0.041 3.959 4 H 0.114 0.886 5 C -0.195 4.195 6 C -0.038 4.038 7 H 0.071 0.929 8 N -0.241 5.241 9 C -0.125 4.125 10 C -0.071 4.071 11 C -0.098 4.098 12 H 0.074 0.926 13 C -0.179 4.179 14 C -0.011 4.011 15 C -0.549 4.549 16 H 0.075 0.925 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.086 4.086 24 C -0.154 4.154 25 C -0.176 4.176 26 C -0.148 4.148 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.040 0.960 35 H 0.091 0.909 36 H 0.046 0.954 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.033 0.967 41 H 0.030 0.970 42 H 0.068 0.932 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.080 0.920 47 H 0.093 0.907 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.559 -18.170 10.594 21.091 hybrid contribution 0.275 1.293 -0.557 1.435 sum 1.834 -16.877 10.037 19.721 Atomic orbital electron populations 1.22739 0.81574 1.02197 1.00070 1.87879 1.19219 1.28075 1.94584 1.23317 0.92567 0.84432 0.95590 0.88646 1.23709 0.97866 1.00621 0.97272 1.22320 0.96883 0.88823 0.95818 0.92861 1.61889 1.37753 0.99848 1.24655 1.22495 0.91240 1.00723 0.98009 1.22435 0.99417 0.95363 0.89845 1.21203 0.96845 0.92280 0.99522 0.92596 1.21572 0.96880 1.00715 0.98715 1.19127 0.96729 0.93852 0.91347 1.21271 1.46460 0.94494 0.92667 0.92550 1.25017 0.95772 0.98746 0.95015 1.69977 1.50365 1.34013 0.99339 0.86592 0.77965 0.85150 0.78635 1.19751 1.21132 1.21097 1.22731 0.95348 0.96028 0.94505 1.22690 1.02043 0.95662 0.95026 1.22823 1.01232 0.97181 0.96358 1.22485 0.98845 0.96919 0.96509 0.94178 0.94022 0.90132 0.89997 0.89379 0.90735 0.91804 0.95970 0.90915 0.95405 0.93986 0.92838 0.94392 0.96679 0.97005 0.93185 0.89863 0.91455 0.90311 0.92044 0.90744 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.86 101.05 1.10 1.39 16 2 O -0.38 -4.58 9.91 -35.23 -0.35 -4.93 16 3 C 0.10 1.21 4.10 -26.28 -0.11 1.10 16 4 H 0.10 1.25 7.90 -51.93 -0.41 0.84 16 5 C -0.16 -2.00 7.34 -25.75 -0.19 -2.19 16 6 C 0.07 0.91 3.19 -67.26 -0.21 0.70 16 7 H 0.05 0.70 8.10 -51.93 -0.42 0.28 16 8 N -0.52 -7.50 3.93 -234.34 -0.92 -8.42 16 9 C 0.02 0.32 9.03 60.06 0.54 0.86 16 10 C 0.06 0.97 4.18 -3.82 -0.02 0.95 16 11 C -0.08 -1.62 2.25 -90.61 -0.20 -1.82 16 12 H 0.06 1.16 6.46 -51.93 -0.34 0.82 16 13 C -0.12 -2.33 8.89 37.16 0.33 -2.00 16 14 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 15 C -0.51 -14.29 8.41 -34.44 -0.29 -14.58 16 16 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 17 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 19 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 23 C -0.09 -0.99 0.97 -154.71 -0.15 -1.14 16 24 C -0.12 -1.27 7.08 -26.28 -0.19 -1.45 16 25 C -0.14 -1.35 8.08 -25.75 -0.21 -1.56 16 26 C -0.11 -1.14 7.55 -26.29 -0.20 -1.34 16 27 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.13 5.76 -51.93 -0.30 0.83 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.07 6.67 -51.93 -0.35 0.73 16 33 H 0.06 0.74 5.34 -51.93 -0.28 0.47 16 34 H 0.02 0.30 8.06 -51.93 -0.42 -0.12 16 35 H 0.07 1.26 5.60 -51.93 -0.29 0.97 16 36 H 0.03 0.50 8.06 -51.93 -0.42 0.08 16 37 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 38 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.08 0.88 5.89 -51.93 -0.31 0.57 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.81 7.65 -51.93 -0.40 0.42 16 48 H 0.08 0.75 8.14 -51.92 -0.42 0.32 16 LS Contribution 364.95 15.07 5.50 5.50 Total: -1.00 -29.46 364.95 -8.91 -38.37 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -8.84 Total: -1.90 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -0.02 Total: -19.03 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: -0.18 Total: -34.71 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.35 Total: -4.93 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.46 -8.91 -38.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602679123.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.251 kcal (2) G-P(sol) polarization free energy of solvation -29.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds