Wall clock time and date at job start Tue Mar 31 2020 06:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46807 * 2 1 4 4 C 1.52992 * 109.47345 * 239.99608 * 2 1 3 5 5 C 1.50701 * 109.47042 * 65.00145 * 4 2 1 6 6 H 1.07993 * 120.00103 * 0.02562 * 5 4 2 7 7 C 1.37887 * 119.99935 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99871 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99926 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47160 * 90.00231 * 9 7 5 11 11 H 1.48493 * 109.47122 * 210.00363 * 9 7 5 12 12 H 1.48503 * 109.47194 * 330.00142 * 9 7 5 13 13 C 1.53001 * 109.46709 * 119.99727 * 2 1 3 14 14 N 1.46900 * 109.47222 * 295.00045 * 13 2 1 15 15 C 1.46900 * 111.00312 * 184.29724 * 14 13 2 16 16 H 1.09003 * 109.46739 * 323.10839 * 15 14 13 17 17 C 1.53002 * 109.47078 * 83.10623 * 15 14 13 18 18 H 1.09001 * 109.46693 * 305.15270 * 17 15 14 19 19 C 1.52998 * 109.47202 * 65.15575 * 17 15 14 20 20 O 1.42903 * 109.46838 * 184.99860 * 19 17 15 21 21 C 1.53002 * 109.46860 * 185.15853 * 17 15 14 22 22 C 1.52998 * 117.49986 * 127.02982 * 21 17 15 23 23 C 1.53000 * 117.50425 * 58.36653 * 21 17 15 24 24 C 1.53003 * 109.47453 * 203.10811 * 15 14 13 25 25 C 1.52990 * 117.50046 * 134.74455 * 24 15 14 26 26 C 1.52996 * 60.00241 * 252.51134 * 25 24 15 27 27 H 1.08998 * 109.47249 * 300.00286 * 1 2 3 28 28 H 1.09005 * 109.47060 * 60.00845 * 1 2 3 29 29 H 1.09005 * 109.46807 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47233 * 184.99857 * 4 2 1 31 31 H 1.09003 * 109.47290 * 304.99873 * 4 2 1 32 32 H 0.97000 * 120.00042 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.47226 * 175.00200 * 13 2 1 34 34 H 1.08994 * 109.47339 * 55.00077 * 13 2 1 35 35 H 1.00900 * 111.00377 * 308.25261 * 14 13 2 36 36 H 1.08995 * 109.46692 * 65.00078 * 19 17 15 37 37 H 1.09003 * 109.46804 * 304.99747 * 19 17 15 38 38 H 0.96695 * 113.99655 * 179.97438 * 20 19 17 39 39 H 1.08997 * 115.54584 * 272.69229 * 21 17 15 40 40 H 1.09004 * 117.49882 * 359.97438 * 22 21 17 41 41 H 1.09000 * 117.50179 * 145.01787 * 22 21 17 42 42 H 1.09001 * 117.49913 * 214.98327 * 23 21 17 43 43 H 1.09000 * 117.49219 * 359.97338 * 23 21 17 44 44 H 1.08998 * 115.54574 * 280.45675 * 24 15 14 45 45 H 1.09003 * 117.50159 * 359.97438 * 25 24 15 46 46 H 1.09001 * 117.50081 * 145.01899 * 25 24 15 47 47 H 1.08997 * 117.49833 * 252.51214 * 26 25 24 48 48 H 1.08999 * 117.50062 * 107.48580 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6414 0.0570 -2.4765 6 1 1.0808 0.9744 -2.3757 7 6 1.9934 -0.4019 -3.7282 8 7 2.6766 -1.5189 -3.8510 9 14 1.4999 0.5631 -5.2496 10 1 2.5655 1.5426 -5.5817 11 1 1.3132 -0.3706 -6.3891 12 1 0.2286 1.2845 -4.9874 13 6 2.0399 -0.7212 1.2493 14 7 1.6512 0.0375 2.4457 15 6 2.2111 -0.5709 3.6599 16 1 2.1977 -1.6564 3.5617 17 6 3.6521 -0.0939 3.8515 18 1 4.2280 -0.3068 2.9509 19 6 3.6595 1.4128 4.1174 20 8 5.0090 1.8787 4.1807 21 6 4.2774 -0.8249 5.0413 22 6 5.6118 -1.5370 4.8111 23 6 4.3283 -2.3530 4.9843 24 6 1.3719 -0.1580 4.8708 25 6 0.9927 -1.2500 5.8730 26 6 -0.0692 -0.6674 4.9384 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1264 -0.7995 -1.2054 31 1 1.6055 -1.7199 -1.2950 32 1 2.9239 -1.8419 -4.7315 33 1 3.1263 -0.7995 1.2058 34 1 1.6053 -1.7197 1.2953 35 1 1.9269 1.0048 2.3658 36 1 3.1599 1.6170 5.0643 37 1 3.1352 1.9265 3.3116 38 1 5.0900 2.8278 4.3467 39 1 4.1150 -0.3627 6.0150 40 1 6.0442 -1.4850 3.8118 41 1 6.3272 -1.5437 5.6334 42 1 4.1998 -2.8961 5.9205 43 1 3.9160 -2.8375 4.0992 44 1 1.5724 0.8387 5.2638 45 1 1.3407 -2.2628 5.6695 46 1 0.9438 -0.9720 6.9258 47 1 -0.8168 -0.0059 5.3762 48 1 -0.4195 -1.2966 4.1202 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602684898.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:10 Heat of formation + Delta-G solvation = -22.633518 kcal Electronic energy + Delta-G solvation = -23073.354713 eV Core-core repulsion = 19935.965046 eV Total energy + Delta-G solvation = -3137.389667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.71895 -36.95195 -36.34870 -36.15658 -33.82497 -32.10754 -30.14815 -26.88481 -26.00190 -24.66995 -23.35324 -22.51693 -22.06863 -21.99025 -21.20355 -19.40967 -18.69415 -17.62827 -16.33074 -15.95239 -15.55324 -15.47733 -14.75272 -14.64702 -14.36639 -14.02578 -13.62280 -13.52050 -13.26153 -12.72862 -12.23510 -12.05052 -12.03494 -11.65467 -11.54786 -11.47260 -11.41781 -11.21147 -10.86004 -10.75292 -10.67713 -10.41819 -10.27782 -10.27025 -10.17657 -10.07344 -9.93345 -9.87482 -9.68083 -9.11597 -8.92513 -8.31282 -8.03379 -5.96025 -3.97091 3.33900 3.40246 3.43515 3.76790 3.78438 4.12768 4.45316 4.46943 4.52724 4.74458 4.86658 4.93743 5.03640 5.06510 5.16906 5.19610 5.33028 5.39832 5.45599 5.54270 5.61107 5.65275 5.66846 5.69534 5.77180 5.89537 5.92024 5.93128 6.04024 6.11918 6.16667 6.18028 6.28014 6.34288 6.44562 6.58223 6.69447 7.03242 7.19588 7.21823 7.38763 7.52480 7.66552 7.71938 7.87176 8.04179 8.48209 9.09258 9.66196 11.15531 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018753 B = 0.003804 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.768604 B = 7359.496761 C = 7846.556821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.083 4.083 3 H 0.052 0.948 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.063 3.937 14 N -0.678 5.678 15 C 0.127 3.873 16 H 0.083 0.917 17 C -0.086 4.086 18 H 0.080 0.920 19 C 0.082 3.918 20 O -0.568 6.568 21 C -0.123 4.123 22 C -0.176 4.176 23 C -0.183 4.183 24 C -0.138 4.138 25 C -0.180 4.180 26 C -0.162 4.162 27 H 0.042 0.958 28 H 0.053 0.947 29 H 0.039 0.961 30 H 0.012 0.988 31 H 0.016 0.984 32 H 0.259 0.741 33 H 0.024 0.976 34 H 0.065 0.935 35 H 0.335 0.665 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.375 0.625 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.564 2.924 21.500 21.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.070 0.930 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.309 5.309 15 C 0.016 3.984 16 H 0.101 0.899 17 C -0.106 4.106 18 H 0.098 0.902 19 C 0.004 3.996 20 O -0.373 6.373 21 C -0.142 4.142 22 C -0.213 4.213 23 C -0.220 4.220 24 C -0.157 4.157 25 C -0.217 4.217 26 C -0.199 4.199 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.030 0.970 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.155 0.845 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.221 0.779 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.110 0.890 46 H 0.105 0.895 47 H 0.105 0.895 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.130 1.850 21.283 21.364 hybrid contribution 0.686 1.290 -0.917 1.725 sum 0.816 3.140 20.367 20.623 Atomic orbital electron populations 1.21587 0.95688 1.00581 1.00108 1.21205 0.95998 0.98795 0.94146 0.92998 1.19113 0.95879 0.95560 0.90439 1.21234 1.34578 1.08244 0.91000 0.92606 1.25018 0.95352 0.95078 0.99077 1.69966 1.39128 1.21215 1.23355 0.86637 0.78913 0.79821 0.82897 1.20779 1.21304 1.19888 1.22190 0.97234 0.97698 0.89405 1.60690 1.62550 1.06128 1.01487 1.21128 0.88710 0.99181 0.89344 0.89878 1.21446 0.97866 0.93318 0.97998 0.90206 1.22257 0.83228 0.94567 0.99528 1.86530 1.26766 1.28411 1.95605 1.21991 0.99967 0.93310 0.98892 1.22964 0.91007 1.04606 1.02742 1.22958 1.02230 0.93917 1.02913 1.22187 0.97740 0.98126 0.97641 1.22932 1.04614 0.98340 0.95826 1.22767 0.91720 1.03629 1.01772 0.93921 0.92842 0.94162 0.96983 0.96579 0.93118 0.95758 0.91615 0.84516 0.93312 0.93527 0.77879 0.88262 0.88975 0.89327 0.89107 0.88957 0.88406 0.89030 0.89453 0.89497 0.88449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.89 37.16 0.33 -2.04 16 2 C -0.08 -1.68 2.44 -90.62 -0.22 -1.90 16 3 H 0.05 1.07 8.13 -51.93 -0.42 0.65 16 4 C 0.03 0.71 4.45 -27.89 -0.12 0.59 16 5 C -0.51 -14.43 8.41 -34.44 -0.29 -14.72 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 9 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.06 1.08 4.88 -3.82 -0.02 1.06 16 14 N -0.68 -9.41 5.70 -106.72 -0.61 -10.02 16 15 C 0.13 1.49 1.86 -67.71 -0.13 1.37 16 16 H 0.08 1.07 6.56 -51.93 -0.34 0.73 16 17 C -0.09 -1.00 2.12 -90.62 -0.19 -1.20 16 18 H 0.08 1.14 6.92 -51.93 -0.36 0.78 16 19 C 0.08 0.86 5.78 37.16 0.21 1.08 16 20 O -0.57 -6.30 13.42 -35.23 -0.47 -6.77 16 21 C -0.12 -1.31 4.42 -90.62 -0.40 -1.71 16 22 C -0.18 -1.93 10.18 -26.69 -0.27 -2.20 16 23 C -0.18 -1.88 9.66 -26.69 -0.26 -2.13 16 24 C -0.14 -1.42 4.48 -90.62 -0.41 -1.82 16 25 C -0.18 -1.67 10.18 -26.74 -0.27 -1.94 16 26 C -0.16 -1.68 10.22 -26.73 -0.27 -1.96 16 27 H 0.04 0.73 7.75 -51.93 -0.40 0.33 16 28 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.02 0.43 7.15 -51.93 -0.37 0.06 16 34 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 35 H 0.34 4.55 6.46 -39.29 -0.25 4.29 16 36 H 0.05 0.45 6.32 -51.93 -0.33 0.12 16 37 H 0.05 0.50 6.28 -51.93 -0.33 0.17 16 38 H 0.38 2.49 9.12 45.56 0.42 2.90 16 39 H 0.10 1.03 8.10 -51.93 -0.42 0.60 16 40 H 0.09 1.11 8.04 -51.93 -0.42 0.69 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.09 1.01 7.48 -51.93 -0.39 0.63 16 44 H 0.10 0.95 6.05 -51.93 -0.31 0.63 16 45 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 46 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 374.71 15.07 5.65 5.65 Total: -1.00 -30.54 374.71 -10.14 -40.69 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -8.02 Total: 6.12 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: -2.40 Total: -26.03 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.13 Total: -36.47 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.47 Total: -6.77 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.54 -10.14 -40.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602684898.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.054 kcal (2) G-P(sol) polarization free energy of solvation -30.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds