Wall clock time and date at job start Tue Mar 31 2020 06:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47512 * 2 1 4 4 C 1.52995 * 109.47344 * 239.99384 * 2 1 3 5 5 C 1.50705 * 109.47176 * 65.00102 * 4 2 1 6 6 H 1.08000 * 119.99361 * 0.02562 * 5 4 2 7 7 C 1.37871 * 119.99959 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00569 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99776 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46914 * 89.99962 * 9 7 5 11 11 H 1.48501 * 109.47088 * 209.99965 * 9 7 5 12 12 H 1.48497 * 109.46941 * 330.00074 * 9 7 5 13 13 C 1.52999 * 109.47015 * 119.99377 * 2 1 3 14 14 N 1.46897 * 109.47444 * 295.00168 * 13 2 1 15 15 C 1.46898 * 111.00315 * 178.91189 * 14 13 2 16 16 H 1.09009 * 109.47066 * 339.07479 * 15 14 13 17 17 C 1.53004 * 109.47067 * 219.07734 * 15 14 13 18 18 H 1.08998 * 109.47167 * 59.99954 * 17 15 14 19 19 C 1.53003 * 109.47227 * 299.99659 * 17 15 14 20 20 O 1.42900 * 109.46929 * 64.99673 * 19 17 15 21 21 C 1.53006 * 109.46974 * 179.97438 * 17 15 14 22 22 C 1.53002 * 117.49906 * 248.61917 * 21 17 15 23 23 C 1.52998 * 117.49489 * 179.97438 * 21 17 15 24 24 C 1.52995 * 109.47557 * 99.07650 * 15 14 13 25 25 C 1.53001 * 117.49873 * 2.94693 * 24 15 14 26 26 C 1.53004 * 117.49693 * 294.28984 * 24 15 14 27 27 H 1.09005 * 109.46994 * 60.00544 * 1 2 3 28 28 H 1.08994 * 109.47093 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47284 * 300.00560 * 1 2 3 30 30 H 1.09004 * 109.47429 * 185.00282 * 4 2 1 31 31 H 1.09003 * 109.47487 * 305.00409 * 4 2 1 32 32 H 0.96994 * 120.00470 * 179.97438 * 8 7 5 33 33 H 1.09007 * 109.47203 * 174.99925 * 13 2 1 34 34 H 1.08996 * 109.47454 * 55.00199 * 13 2 1 35 35 H 1.00903 * 110.99705 * 54.95604 * 14 13 2 36 36 H 1.08995 * 109.47289 * 185.00275 * 19 17 15 37 37 H 1.09004 * 109.46774 * 305.00179 * 19 17 15 38 38 H 0.96698 * 114.00170 * 180.02562 * 20 19 17 39 39 H 1.08995 * 115.54790 * 34.32913 * 21 17 15 40 40 H 1.09004 * 117.49729 * 0.02562 * 22 21 17 41 41 H 1.09000 * 117.49565 * 145.02145 * 22 21 17 42 42 H 1.08997 * 117.49983 * 214.97686 * 23 21 17 43 43 H 1.09000 * 117.50133 * 0.02562 * 23 21 17 44 44 H 1.09001 * 115.55483 * 148.62234 * 24 15 14 45 45 H 1.09000 * 117.49509 * 0.02562 * 25 24 15 46 46 H 1.08998 * 117.49880 * 145.02021 * 25 24 15 47 47 H 1.08995 * 117.50219 * 214.97476 * 26 24 15 48 48 H 1.09003 * 117.49604 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6414 0.0568 -2.4766 6 1 1.0807 0.9744 -2.3757 7 6 1.9933 -0.4020 -3.7281 8 7 2.6765 -1.5191 -3.8510 9 14 1.4986 0.5622 -5.2497 10 1 2.5632 1.5426 -5.5823 11 1 1.3124 -0.3719 -6.3889 12 1 0.2268 1.2826 -4.9873 13 6 2.0399 -0.7211 1.2493 14 7 1.6513 0.0376 2.4456 15 6 2.1028 -0.6398 3.6684 16 1 2.2831 -1.6934 3.4547 17 6 1.0255 -0.5155 4.7478 18 1 0.1033 -0.9778 4.3956 19 6 0.7724 0.9633 5.0478 20 8 0.2232 1.5969 3.8907 21 6 1.4955 -1.2216 6.0212 22 6 0.7622 -2.5002 6.4316 23 6 0.5518 -1.2087 7.2254 24 6 3.3972 0.0090 4.1628 25 6 3.9214 1.2196 3.3877 26 6 4.6385 -0.1283 3.2789 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 3.1263 -0.7996 -1.2054 31 1 1.6054 -1.7199 -1.2950 32 1 2.9238 -1.8421 -4.7315 33 1 3.1263 -0.7994 1.2057 34 1 1.6054 -1.7196 1.2954 35 1 0.6548 0.1948 2.4662 36 1 0.0709 1.0509 5.8775 37 1 1.7127 1.4460 5.3146 38 1 0.0375 2.5385 4.0087 39 1 2.5658 -1.1689 6.2201 40 1 -0.0547 -2.8386 5.7942 41 1 1.3503 -3.2890 6.9007 42 1 1.0013 -1.1483 8.2165 43 1 -0.4041 -0.6975 7.1103 44 1 3.5448 0.0004 5.2427 45 1 3.3438 1.5540 2.5259 46 1 4.4141 2.0072 3.9577 47 1 5.6028 -0.2269 3.7773 48 1 4.5331 -0.6813 2.3455 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602684899.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:13 Heat of formation + Delta-G solvation = -14.270469 kcal Electronic energy + Delta-G solvation = -23277.497088 eV Core-core repulsion = 20140.470070 eV Total energy + Delta-G solvation = -3137.027018 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.64590 -37.24100 -36.22088 -35.72975 -33.34445 -32.06002 -30.27780 -26.84481 -26.03019 -24.73449 -23.08664 -22.53812 -22.23736 -21.90480 -20.81242 -19.20079 -18.48009 -17.36891 -16.53575 -16.15814 -15.62170 -14.93728 -14.78184 -14.43510 -14.21643 -13.88922 -13.76189 -13.38717 -13.14443 -12.59323 -12.30914 -12.02585 -11.76700 -11.70817 -11.65443 -11.36453 -11.21228 -11.14648 -10.85560 -10.82958 -10.62595 -10.48100 -10.25969 -10.14723 -9.98555 -9.93228 -9.72870 -9.62087 -9.52912 -9.02742 -8.85620 -8.26614 -7.79156 -5.91445 -3.92119 3.37081 3.43046 3.46568 3.49627 4.02410 4.14203 4.51736 4.53345 4.60488 4.72136 4.93886 4.97124 4.98244 5.25362 5.31185 5.35047 5.38478 5.40317 5.44281 5.45408 5.61049 5.67602 5.79597 5.82837 5.87176 5.91079 5.95402 6.01990 6.05626 6.16846 6.21306 6.29592 6.37833 6.48891 6.64259 6.75862 6.80558 7.11468 7.23258 7.30090 7.64330 7.69785 7.78079 7.94766 8.09818 8.14749 8.54300 9.14508 9.70878 11.20139 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024464 B = 0.003638 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.251653 B = 7695.669579 C = 7891.206743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.081 4.081 3 H 0.063 0.937 4 C 0.028 3.972 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.060 3.940 14 N -0.669 5.669 15 C 0.126 3.874 16 H 0.049 0.951 17 C -0.061 4.061 18 H 0.073 0.927 19 C 0.092 3.908 20 O -0.556 6.556 21 C -0.144 4.144 22 C -0.177 4.177 23 C -0.182 4.182 24 C -0.148 4.148 25 C -0.155 4.155 26 C -0.188 4.188 27 H 0.059 0.941 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.014 0.986 31 H 0.012 0.988 32 H 0.259 0.741 33 H 0.064 0.936 34 H 0.017 0.983 35 H 0.353 0.647 36 H 0.034 0.966 37 H 0.050 0.950 38 H 0.374 0.626 39 H 0.111 0.889 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.120 0.880 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.486 2.699 23.015 23.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.100 4.100 3 H 0.082 0.918 4 C -0.010 4.010 5 C -0.548 4.548 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.069 4.069 14 N -0.305 5.305 15 C 0.015 3.985 16 H 0.067 0.933 17 C -0.080 4.080 18 H 0.092 0.908 19 C 0.014 3.986 20 O -0.360 6.360 21 C -0.163 4.163 22 C -0.214 4.214 23 C -0.219 4.219 24 C -0.167 4.167 25 C -0.192 4.192 26 C -0.225 4.225 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.032 0.968 31 H 0.031 0.969 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.035 0.965 35 H 0.178 0.822 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.220 0.780 39 H 0.129 0.871 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.138 0.862 46 H 0.092 0.908 47 H 0.099 0.901 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.843 2.395 22.600 22.801 hybrid contribution -0.761 0.117 -0.540 0.941 sum -2.604 2.511 22.060 22.355 Atomic orbital electron populations 1.21727 0.96805 1.00196 1.00337 1.21165 0.94766 0.99913 0.94108 0.91813 1.19110 0.96012 0.95312 0.90529 1.21256 1.34379 1.08168 0.91021 0.92602 1.25019 0.95430 0.95092 0.99051 1.69968 1.39287 1.21258 1.23266 0.86645 0.78914 0.79813 0.82929 1.20761 1.21389 1.19931 1.22301 1.00053 0.94244 0.90284 1.60567 1.22171 1.47970 0.99804 1.20855 0.92133 0.95612 0.89853 0.93332 1.20986 0.98665 0.94498 0.93874 0.90841 1.22015 0.96807 0.92640 0.87122 1.86457 1.85459 1.26856 1.37266 1.22295 0.98332 1.00810 0.94873 1.23015 1.03229 0.91358 1.03787 1.22959 1.01309 1.01715 0.95928 1.22365 0.94090 1.03993 0.96289 1.22909 1.02357 0.90150 1.03750 1.22991 0.95168 1.02401 1.01958 0.92160 0.94380 0.94520 0.96810 0.96926 0.93183 0.91729 0.96525 0.82239 0.94810 0.93210 0.77950 0.87103 0.88779 0.88780 0.88880 0.88848 0.88746 0.86197 0.90788 0.90064 0.88706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 8.78 37.16 0.33 -2.30 16 2 C -0.08 -1.71 2.54 -90.62 -0.23 -1.94 16 3 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -14.58 8.41 -34.44 -0.29 -14.87 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 9 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.06 1.09 4.84 -3.83 -0.02 1.07 16 14 N -0.67 -10.08 3.71 -106.72 -0.40 -10.47 16 15 C 0.13 1.62 2.29 -67.71 -0.16 1.47 16 16 H 0.05 0.70 7.61 -51.92 -0.40 0.30 16 17 C -0.06 -0.65 2.07 -90.61 -0.19 -0.84 16 18 H 0.07 0.87 7.90 -51.93 -0.41 0.46 16 19 C 0.09 0.90 6.18 37.16 0.23 1.13 16 20 O -0.56 -6.07 10.76 -35.23 -0.38 -6.45 16 21 C -0.14 -1.30 4.85 -90.62 -0.44 -1.73 16 22 C -0.18 -1.49 10.18 -26.71 -0.27 -1.76 16 23 C -0.18 -1.40 9.67 -26.71 -0.26 -1.66 16 24 C -0.15 -1.80 4.08 -90.62 -0.37 -2.17 16 25 C -0.15 -2.04 9.84 -26.69 -0.26 -2.30 16 26 C -0.19 -2.50 10.04 -26.69 -0.27 -2.76 16 27 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.04 0.63 6.65 -51.93 -0.35 0.28 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.06 1.22 5.87 -51.92 -0.30 0.91 16 34 H 0.02 0.31 8.06 -51.93 -0.42 -0.11 16 35 H 0.35 5.47 4.45 -39.29 -0.17 5.29 16 36 H 0.03 0.29 7.12 -51.93 -0.37 -0.08 16 37 H 0.05 0.49 7.03 -51.93 -0.37 0.13 16 38 H 0.37 2.72 9.12 45.56 0.42 3.13 16 39 H 0.11 0.98 6.24 -51.93 -0.32 0.66 16 40 H 0.09 0.82 8.05 -51.93 -0.42 0.40 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.71 7.58 -51.93 -0.39 0.31 16 44 H 0.09 1.01 6.22 -51.93 -0.32 0.68 16 45 H 0.12 1.88 6.90 -51.93 -0.36 1.52 16 46 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.09 1.44 6.03 -51.93 -0.31 1.13 16 LS Contribution 364.57 15.07 5.49 5.49 Total: -1.00 -30.49 364.57 -9.73 -40.21 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -7.75 Total: 7.47 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: -2.42 Total: -26.56 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.34 Total: -37.24 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.38 Total: -6.45 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.49 -9.73 -40.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602684899.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.944 kcal (2) G-P(sol) polarization free energy of solvation -30.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds