Wall clock time and date at job start Tue Mar 31 2020 06:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.47192 * 2 1 4 4 C 1.53005 * 109.46537 * 240.00391 * 2 1 3 5 5 C 1.50707 * 109.47130 * 65.00159 * 4 2 1 6 6 H 1.07996 * 119.99836 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99786 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00226 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99865 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46845 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47119 * 120.00063 * 9 7 5 12 12 H 1.48497 * 109.46964 * 240.00137 * 9 7 5 13 13 C 1.52994 * 109.47320 * 120.00465 * 2 1 3 14 14 N 1.46899 * 109.47121 * 294.99978 * 13 2 1 15 15 C 1.46904 * 110.99646 * 185.13772 * 14 13 2 16 16 H 1.09002 * 109.46539 * 174.93604 * 15 14 13 17 17 C 1.52999 * 109.47119 * 294.93508 * 15 14 13 18 18 H 1.08994 * 109.47605 * 54.74305 * 17 15 14 19 19 C 1.53005 * 109.46965 * 294.74674 * 17 15 14 20 20 O 1.42900 * 109.47529 * 64.24832 * 19 17 15 21 21 C 1.52993 * 109.47144 * 174.74789 * 17 15 14 22 22 C 1.53000 * 117.49847 * 248.74624 * 21 17 15 23 23 C 1.53003 * 117.50015 * 180.08785 * 21 17 15 24 24 C 1.53001 * 109.47245 * 54.93546 * 15 14 13 25 25 C 1.52998 * 117.49755 * 133.45479 * 24 15 14 26 26 C 1.52998 * 117.49643 * 64.79728 * 24 15 14 27 27 H 1.09005 * 109.46274 * 299.99639 * 1 2 3 28 28 H 1.09001 * 109.47087 * 59.99273 * 1 2 3 29 29 H 1.08997 * 109.47487 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47008 * 184.99774 * 4 2 1 31 31 H 1.08997 * 109.47469 * 305.00237 * 4 2 1 32 32 H 0.97004 * 119.99995 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.46963 * 54.99789 * 13 2 1 34 34 H 1.08998 * 109.47211 * 174.99208 * 13 2 1 35 35 H 1.00892 * 110.99858 * 309.08720 * 14 13 2 36 36 H 1.09008 * 109.47139 * 184.25134 * 19 17 15 37 37 H 1.08999 * 109.47254 * 304.24448 * 19 17 15 38 38 H 0.96699 * 114.00100 * 179.97438 * 20 19 17 39 39 H 1.09003 * 115.55178 * 34.41869 * 21 17 15 40 40 H 1.08994 * 117.50098 * 359.97438 * 22 21 17 41 41 H 1.08998 * 117.49978 * 145.02236 * 22 21 17 42 42 H 1.09003 * 117.50004 * 214.97610 * 23 21 17 43 43 H 1.09000 * 117.49661 * 359.97438 * 23 21 17 44 44 H 1.08991 * 115.55076 * 279.12199 * 24 15 14 45 45 H 1.09002 * 117.49589 * 359.97438 * 25 24 15 46 46 H 1.08993 * 117.50164 * 145.01667 * 25 24 15 47 47 H 1.09010 * 117.49488 * 214.97985 * 26 24 15 48 48 H 1.08995 * 117.49882 * 359.96985 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6412 0.0572 -2.4767 6 1 1.0799 0.9743 -2.3757 7 6 1.9930 -0.4015 -3.7284 8 7 2.6769 -1.5180 -3.8513 9 14 1.4994 0.5638 -5.2496 10 1 0.7420 1.7748 -4.8433 11 1 2.7177 0.9686 -5.9959 12 1 0.6456 -0.2850 -6.1189 13 6 2.0401 -0.7213 1.2491 14 7 1.6515 0.0373 2.4456 15 6 2.2280 -0.5599 3.6577 16 1 1.9998 0.0706 4.5171 17 6 1.6312 -1.9520 3.8737 18 1 1.7778 -2.5535 2.9767 19 6 0.1342 -1.8258 4.1639 20 8 -0.5293 -1.2871 3.0186 21 6 2.3253 -2.6261 5.0589 22 6 3.2254 -3.8268 4.7607 23 6 1.8680 -4.0366 5.4365 24 6 3.7452 -0.6747 3.4977 25 6 4.6161 -0.2075 4.6657 26 6 4.5438 0.6253 3.3834 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1263 -0.7994 -1.2058 31 1 1.6053 -1.7197 -1.2954 32 1 2.9241 -1.8409 -4.7320 33 1 1.6054 -1.7199 1.2950 34 1 3.1264 -0.7996 1.2054 35 1 1.9150 1.0074 2.3600 36 1 -0.2759 -2.8096 4.3922 37 1 -0.0161 -1.1630 5.0161 38 1 -1.4837 -1.1796 3.1313 39 1 2.6254 -1.9608 5.8685 40 1 3.3228 -4.1368 3.7203 41 1 4.1176 -3.9517 5.3743 42 1 1.8678 -4.2993 6.4944 43 1 1.0724 -4.4840 4.8408 44 1 4.0937 -1.5317 2.9215 45 1 4.1080 0.1821 5.5479 46 1 5.5376 -0.7569 4.8577 47 1 5.4180 0.6234 2.7322 48 1 3.9883 1.5623 3.4217 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602684900.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:15 Heat of formation + Delta-G solvation = -17.100208 kcal Electronic energy + Delta-G solvation = -23479.185824 eV Core-core repulsion = 20342.036099 eV Total energy + Delta-G solvation = -3137.149725 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.56625 -37.14850 -36.12303 -35.64140 -33.46078 -31.93910 -30.04742 -26.79797 -25.91464 -24.70805 -22.91708 -22.32711 -22.30434 -22.11744 -20.45905 -19.59839 -18.65958 -17.05835 -16.23356 -16.05477 -15.47029 -14.88170 -14.77748 -14.46211 -14.24924 -13.95299 -13.64962 -13.34031 -13.18683 -12.31184 -12.17749 -11.94790 -11.64006 -11.59208 -11.53187 -11.33956 -11.19763 -11.16265 -10.83888 -10.71693 -10.65710 -10.43808 -10.17680 -10.15469 -10.01114 -9.96869 -9.84384 -9.54209 -9.47552 -8.97989 -8.80591 -8.24967 -7.70914 -5.89864 -3.90044 3.36652 3.43960 3.48552 3.67154 3.84976 4.26518 4.53310 4.57487 4.65688 4.84745 4.89547 4.98135 5.05846 5.14531 5.23109 5.36490 5.42176 5.46041 5.54123 5.57012 5.62891 5.64985 5.77019 5.83011 5.89309 5.94970 5.97999 6.02885 6.08711 6.12805 6.19628 6.28178 6.38964 6.46894 6.72578 6.80575 6.94090 7.25498 7.39794 7.41334 7.65633 7.80496 7.93904 8.01234 8.02956 8.12372 8.57427 9.17047 9.72805 11.21822 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019871 B = 0.004081 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.717321 B = 6859.592644 C = 7198.106160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.081 4.081 3 H 0.047 0.953 4 C 0.028 3.972 5 C -0.508 4.508 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.072 3.928 14 N -0.653 5.653 15 C 0.133 3.867 16 H 0.070 0.930 17 C -0.048 4.048 18 H 0.081 0.919 19 C 0.095 3.905 20 O -0.531 6.531 21 C -0.136 4.136 22 C -0.174 4.174 23 C -0.185 4.185 24 C -0.173 4.173 25 C -0.176 4.176 26 C -0.180 4.180 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.009 0.991 31 H 0.014 0.986 32 H 0.257 0.743 33 H 0.065 0.935 34 H 0.020 0.980 35 H 0.329 0.671 36 H 0.032 0.968 37 H 0.033 0.967 38 H 0.362 0.638 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.101 0.899 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.918 -1.172 21.573 21.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.100 4.100 3 H 0.065 0.935 4 C -0.009 4.009 5 C -0.546 4.546 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.056 4.056 14 N -0.281 5.281 15 C 0.022 3.978 16 H 0.088 0.912 17 C -0.067 4.067 18 H 0.100 0.900 19 C 0.016 3.984 20 O -0.333 6.333 21 C -0.155 4.155 22 C -0.211 4.211 23 C -0.222 4.222 24 C -0.193 4.193 25 C -0.214 4.214 26 C -0.217 4.217 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.028 0.972 31 H 0.032 0.968 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.038 0.962 35 H 0.147 0.853 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.206 0.794 39 H 0.121 0.879 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.120 0.880 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.110 0.890 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.859 -1.605 21.252 21.330 hybrid contribution 0.396 0.578 -0.765 1.037 sum -0.463 -1.027 20.487 20.518 Atomic orbital electron populations 1.21492 0.95542 1.00506 0.99551 1.21168 0.96166 0.98410 0.94260 0.93494 1.19107 0.95660 0.95519 0.90652 1.21311 1.34070 1.08164 0.91056 0.92599 1.25017 0.95465 0.95107 0.99024 1.69982 1.39418 1.21381 1.23074 0.86606 0.78192 0.80189 0.83442 1.19764 1.21201 1.21147 1.22042 0.96466 0.97916 0.89221 1.60648 1.61040 1.05083 1.01306 1.21058 0.87743 0.94762 0.94207 0.91229 1.20731 0.92995 0.96160 0.96786 0.90041 1.21890 0.92387 0.95726 0.88390 1.86894 1.22988 1.86350 1.37058 1.22115 1.03100 0.90276 1.00003 1.22973 0.93960 1.02392 1.01743 1.22971 0.98476 0.99823 1.00929 1.23114 0.95729 0.98443 1.02023 1.22888 1.01822 1.04334 0.92381 1.22881 1.02827 0.95376 1.00587 0.93604 0.93755 0.94232 0.97234 0.96756 0.93290 0.91690 0.96171 0.85311 0.95006 0.94869 0.79404 0.87932 0.88772 0.89083 0.89113 0.88853 0.88039 0.89327 0.89429 0.89024 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.32 8.89 37.16 0.33 -1.98 16 2 C -0.08 -1.73 2.43 -90.62 -0.22 -1.95 16 3 H 0.05 1.02 8.12 -51.93 -0.42 0.60 16 4 C 0.03 0.75 4.45 -27.88 -0.12 0.63 16 5 C -0.51 -14.65 8.41 -34.44 -0.29 -14.94 16 6 H 0.06 1.58 7.06 -52.49 -0.37 1.21 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.68 13.29 55.43 0.74 -26.94 16 9 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 C 0.07 1.30 4.36 -3.83 -0.02 1.28 16 14 N -0.65 -9.59 4.22 -106.72 -0.45 -10.04 16 15 C 0.13 1.63 2.22 -67.71 -0.15 1.48 16 16 H 0.07 0.82 7.94 -51.93 -0.41 0.41 16 17 C -0.05 -0.56 1.83 -90.62 -0.17 -0.73 16 18 H 0.08 1.18 6.15 -51.93 -0.32 0.86 16 19 C 0.09 1.05 6.34 37.16 0.24 1.29 16 20 O -0.53 -6.92 11.89 -35.23 -0.42 -7.34 16 21 C -0.14 -1.32 4.19 -90.62 -0.38 -1.70 16 22 C -0.17 -1.67 10.18 -26.69 -0.27 -1.94 16 23 C -0.18 -1.65 9.69 -26.69 -0.26 -1.91 16 24 C -0.17 -2.08 2.81 -90.62 -0.25 -2.33 16 25 C -0.18 -1.79 10.13 -26.70 -0.27 -2.06 16 26 C -0.18 -2.10 10.05 -26.70 -0.27 -2.36 16 27 H 0.04 0.84 7.75 -51.93 -0.40 0.44 16 28 H 0.04 0.96 6.95 -51.93 -0.36 0.60 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.06 1.26 6.58 -51.93 -0.34 0.92 16 34 H 0.02 0.38 6.48 -51.93 -0.34 0.04 16 35 H 0.33 4.82 8.53 -39.30 -0.34 4.49 16 36 H 0.03 0.33 7.15 -51.92 -0.37 -0.04 16 37 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.36 3.40 9.12 45.56 0.42 3.82 16 39 H 0.10 0.94 8.11 -51.93 -0.42 0.52 16 40 H 0.09 1.01 8.05 -51.93 -0.42 0.59 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.09 0.87 7.59 -51.93 -0.39 0.47 16 44 H 0.10 1.40 7.70 -51.93 -0.40 1.00 16 45 H 0.09 0.82 8.08 -51.93 -0.42 0.40 16 46 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 48 H 0.09 1.03 8.12 -51.93 -0.42 0.61 16 LS Contribution 374.63 15.07 5.65 5.65 Total: -1.00 -30.96 374.63 -9.96 -40.92 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -8.25 Total: 6.33 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: -2.20 Total: -25.76 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.29 Total: -36.98 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.42 Total: -7.34 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.96 -9.96 -40.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602684900.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.818 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds