Wall clock time and date at job start Tue Mar 31 2020 06:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46915 * 2 1 4 4 C 1.52993 * 109.47410 * 239.99516 * 2 1 3 5 5 C 1.50704 * 109.47178 * 65.00095 * 4 2 1 6 6 H 1.08009 * 119.99473 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00392 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99640 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00244 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46995 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47184 * 119.99504 * 9 7 5 12 12 H 1.48500 * 109.47277 * 239.99955 * 9 7 5 13 13 C 1.53008 * 109.46868 * 119.99552 * 2 1 3 14 14 N 1.46900 * 109.47272 * 294.99951 * 13 2 1 15 15 C 1.46892 * 110.99964 * 184.39891 * 14 13 2 16 16 H 1.09004 * 109.47090 * 321.16912 * 15 14 13 17 17 C 1.52998 * 109.47174 * 201.17265 * 15 14 13 18 18 H 1.09007 * 109.47429 * 185.39531 * 17 15 14 19 19 C 1.53005 * 109.46776 * 305.39437 * 17 15 14 20 20 O 1.42902 * 109.46902 * 185.00050 * 19 17 15 21 21 C 1.53000 * 109.47280 * 65.39378 * 17 15 14 22 22 C 1.52998 * 117.50070 * 61.16710 * 21 17 15 23 23 C 1.52999 * 60.03208 * 107.47685 * 22 21 17 24 24 C 1.53000 * 109.47431 * 81.17038 * 15 14 13 25 25 C 1.52999 * 117.49978 * 249.54254 * 24 15 14 26 26 C 1.52999 * 117.50103 * 180.91773 * 24 15 14 27 27 H 1.09000 * 109.47263 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47219 * 300.00367 * 1 2 3 29 29 H 1.09000 * 109.47164 * 60.00134 * 1 2 3 30 30 H 1.08997 * 109.47324 * 184.99935 * 4 2 1 31 31 H 1.09003 * 109.47027 * 305.00761 * 4 2 1 32 32 H 0.97007 * 119.99517 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.46423 * 175.00197 * 13 2 1 34 34 H 1.08994 * 109.46791 * 55.00174 * 13 2 1 35 35 H 1.00903 * 110.99795 * 60.44323 * 14 13 2 36 36 H 1.09001 * 109.46850 * 304.99816 * 19 17 15 37 37 H 1.08997 * 109.47258 * 65.00661 * 19 17 15 38 38 H 0.96701 * 114.00027 * 180.02562 * 20 19 17 39 39 H 1.08997 * 115.56083 * 275.47800 * 21 17 15 40 40 H 1.08995 * 117.50025 * 214.98352 * 22 21 17 41 41 H 1.09007 * 117.49733 * 359.97438 * 22 21 17 42 42 H 1.09001 * 117.49607 * 107.49848 * 23 22 21 43 43 H 1.09003 * 117.50497 * 252.52346 * 23 22 21 44 44 H 1.08998 * 115.54925 * 35.25026 * 24 15 14 45 45 H 1.09003 * 117.49674 * 359.97438 * 25 24 15 46 46 H 1.09003 * 117.50029 * 145.02024 * 25 24 15 47 47 H 1.08999 * 117.49918 * 214.97749 * 26 24 15 48 48 H 1.09002 * 117.49787 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6414 0.0569 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9925 -0.4024 -3.7282 8 7 2.6756 -1.5195 -3.8510 9 14 1.4977 0.5618 -5.2497 10 1 0.7403 1.7729 -4.8436 11 1 2.7155 0.9665 -5.9970 12 1 0.6434 -0.2875 -6.1180 13 6 2.0400 -0.7212 1.2494 14 7 1.6513 0.0376 2.4457 15 6 2.2132 -0.5695 3.6596 16 1 2.1697 -1.6554 3.5764 17 6 1.4036 -0.1185 4.8770 18 1 1.8765 -0.4905 5.7860 19 6 1.3524 1.4101 4.9176 20 8 0.6971 1.8331 6.1150 21 6 -0.0185 -0.6740 4.7780 22 6 -0.1828 -2.1949 4.7527 23 6 -0.5787 -1.4042 6.0012 24 6 3.6691 -0.1285 3.8235 25 6 4.7551 -1.1864 3.6179 26 6 4.4418 -0.6751 5.0255 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.1263 -0.7995 -1.2054 31 1 1.6053 -1.7198 -1.2950 32 1 2.9229 -1.8424 -4.7316 33 1 3.1263 -0.7994 1.2057 34 1 1.6053 -1.7197 1.2953 35 1 0.6477 0.1178 2.5128 36 1 2.3670 1.8083 4.8985 37 1 0.8012 1.7783 4.0523 38 1 0.6283 2.7933 6.2075 39 1 -0.7140 -0.0827 4.1823 40 1 -0.9862 -2.6043 4.1403 41 1 0.7225 -2.7999 4.8062 42 1 -1.6428 -1.2932 6.2102 43 1 0.0661 -1.4884 6.8760 44 1 3.8908 0.8896 3.5034 45 1 4.4323 -2.1967 3.3664 46 1 5.6916 -0.8644 3.1624 47 1 5.1722 -0.0168 5.4960 48 1 3.9129 -1.3486 5.6999 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602684901.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:18 Heat of formation + Delta-G solvation = -25.914166 kcal Electronic energy + Delta-G solvation = -23075.889091 eV Core-core repulsion = 19938.357164 eV Total energy + Delta-G solvation = -3137.531927 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.64339 -37.11498 -36.29522 -36.11772 -33.67652 -32.11761 -30.24956 -26.92106 -25.88299 -24.59596 -23.57413 -22.41577 -22.38251 -22.25138 -20.63824 -19.11011 -18.72403 -17.44464 -16.39055 -16.00733 -15.80238 -15.58484 -14.99004 -14.51530 -14.21242 -13.83322 -13.70138 -13.52808 -13.15547 -12.66089 -12.30241 -12.26017 -11.91674 -11.68517 -11.59743 -11.58870 -11.34471 -11.21820 -10.93717 -10.86099 -10.73512 -10.41901 -10.33084 -10.28811 -10.23460 -10.05445 -9.86493 -9.69880 -9.65011 -9.10128 -8.91501 -8.31333 -8.10482 -5.95884 -3.96733 3.32911 3.40551 3.44533 3.63974 3.85743 4.15598 4.35796 4.45022 4.50890 4.79910 4.88897 4.89480 4.98321 5.12745 5.16101 5.31341 5.39496 5.40105 5.53724 5.56288 5.58836 5.63620 5.65960 5.78115 5.84430 5.85918 5.90471 5.92207 6.04307 6.09623 6.10249 6.12217 6.22076 6.28656 6.35370 6.53024 6.61644 6.99774 7.14422 7.21491 7.42821 7.58876 7.70566 7.73708 7.89845 8.04980 8.49039 9.09997 9.66632 11.15664 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019869 B = 0.003745 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.892278 B = 7474.030279 C = 7941.798505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.082 4.082 3 H 0.064 0.936 4 C 0.028 3.972 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.066 3.934 14 N -0.681 5.681 15 C 0.126 3.874 16 H 0.048 0.952 17 C -0.051 4.051 18 H 0.080 0.920 19 C 0.090 3.910 20 O -0.577 6.577 21 C -0.143 4.143 22 C -0.185 4.185 23 C -0.168 4.168 24 C -0.135 4.135 25 C -0.179 4.179 26 C -0.183 4.183 27 H 0.040 0.960 28 H 0.030 0.970 29 H 0.061 0.939 30 H 0.014 0.986 31 H 0.013 0.987 32 H 0.258 0.742 33 H 0.068 0.932 34 H 0.021 0.979 35 H 0.339 0.661 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.374 0.626 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.111 0.889 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.091 0.909 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.941 2.370 20.744 20.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.101 4.101 3 H 0.082 0.918 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.062 4.062 14 N -0.314 5.314 15 C 0.016 3.984 16 H 0.065 0.935 17 C -0.070 4.070 18 H 0.098 0.902 19 C 0.012 3.988 20 O -0.382 6.382 21 C -0.161 4.161 22 C -0.222 4.222 23 C -0.205 4.205 24 C -0.154 4.154 25 C -0.216 4.216 26 C -0.220 4.220 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.033 0.967 31 H 0.032 0.968 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.040 0.960 35 H 0.159 0.841 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.220 0.780 39 H 0.121 0.879 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.129 0.871 45 H 0.109 0.891 46 H 0.112 0.888 47 H 0.110 0.890 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.406 2.055 20.634 20.784 hybrid contribution -0.669 0.172 -1.059 1.265 sum -2.075 2.227 19.575 19.810 Atomic orbital electron populations 1.21727 0.96834 1.00321 1.00117 1.21195 0.94721 0.99999 0.94172 0.91775 1.19107 0.96087 0.95334 0.90434 1.21284 1.34422 1.08219 0.91001 0.92559 1.25017 0.95383 0.95086 0.99074 1.69982 1.39225 1.21272 1.23201 0.86592 0.78250 0.80137 0.83362 1.19765 1.21104 1.21150 1.22142 1.00433 0.94169 0.89471 1.60574 1.16203 1.53296 1.01298 1.20996 0.91645 0.96377 0.89379 0.93452 1.20859 0.93226 0.94588 0.98288 0.90194 1.22106 0.96170 0.94072 0.86428 1.86463 1.81669 1.27090 1.42950 1.22254 0.97537 0.94008 1.02294 1.22976 1.03276 0.94166 1.01799 1.22894 1.01214 1.04191 0.92218 1.22324 0.92050 0.99234 1.01769 1.23004 1.00407 0.99160 0.99053 1.22921 1.03634 1.04190 0.91302 0.94127 0.95077 0.92017 0.96724 0.96847 0.93204 0.91334 0.96024 0.84064 0.93270 0.92662 0.77951 0.87916 0.88863 0.89061 0.89165 0.89067 0.87125 0.89053 0.88838 0.89042 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.77 37.16 0.33 -2.14 16 2 C -0.08 -1.66 2.55 -90.62 -0.23 -1.89 16 3 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.31 8.41 -34.44 -0.29 -14.60 16 6 H 0.06 1.54 7.06 -52.48 -0.37 1.17 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 9 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 13 C 0.07 1.14 4.93 -3.82 -0.02 1.12 16 14 N -0.68 -9.50 5.46 -106.73 -0.58 -10.08 16 15 C 0.13 1.52 1.87 -67.72 -0.13 1.39 16 16 H 0.05 0.62 6.73 -51.93 -0.35 0.27 16 17 C -0.05 -0.55 1.93 -90.62 -0.17 -0.73 16 18 H 0.08 0.89 6.94 -51.93 -0.36 0.53 16 19 C 0.09 0.95 6.00 37.16 0.22 1.17 16 20 O -0.58 -5.93 13.42 -35.23 -0.47 -6.40 16 21 C -0.14 -1.55 4.02 -90.58 -0.36 -1.91 16 22 C -0.19 -1.93 9.67 -26.73 -0.26 -2.19 16 23 C -0.17 -1.69 10.18 -26.69 -0.27 -1.96 16 24 C -0.13 -1.59 4.00 -90.62 -0.36 -1.95 16 25 C -0.18 -2.06 10.18 -26.73 -0.27 -2.33 16 26 C -0.18 -1.84 9.67 -26.73 -0.26 -2.10 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.03 0.48 6.78 -51.92 -0.35 0.13 16 29 H 0.06 1.25 6.95 -51.93 -0.36 0.88 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.07 1.23 7.78 -51.93 -0.40 0.83 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.34 4.61 5.29 -39.29 -0.21 4.40 16 36 H 0.05 0.52 7.09 -51.93 -0.37 0.15 16 37 H 0.06 0.61 7.43 -51.93 -0.39 0.23 16 38 H 0.37 2.31 9.12 45.56 0.42 2.73 16 39 H 0.10 1.16 7.72 -51.93 -0.40 0.76 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.09 0.95 7.66 -51.93 -0.40 0.55 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.09 0.90 8.06 -51.93 -0.42 0.48 16 44 H 0.11 1.40 7.92 -51.93 -0.41 0.98 16 45 H 0.09 1.07 8.05 -51.93 -0.42 0.65 16 46 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.09 0.86 7.64 -51.93 -0.40 0.46 16 LS Contribution 374.90 15.07 5.65 5.65 Total: -1.00 -30.15 374.90 -10.12 -40.27 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -8.13 Total: 6.19 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: -2.30 Total: -26.04 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.15 Total: -36.39 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.47 Total: -6.40 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.15 -10.12 -40.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602684901.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.355 kcal (2) G-P(sol) polarization free energy of solvation -30.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds