Wall clock time and date at job start Tue Mar 31 2020 06:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47763 * 2 1 4 4 C 1.53000 * 109.47022 * 240.00251 * 2 1 3 5 5 C 1.50707 * 109.47014 * 65.00375 * 4 2 1 6 6 H 1.07993 * 119.99747 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99657 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00294 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99546 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47197 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47068 * 119.99974 * 9 7 5 12 12 H 1.48500 * 109.47001 * 239.99460 * 9 7 5 13 13 C 1.52999 * 109.47221 * 120.00437 * 2 1 3 14 14 N 1.46893 * 109.47306 * 294.99635 * 13 2 1 15 15 C 1.46841 * 111.00544 * 169.99722 * 14 13 2 16 16 C 1.53037 * 109.52934 * 185.84076 * 15 14 13 17 17 C 1.53115 * 109.27650 * 300.82223 * 16 15 14 18 18 O 1.42899 * 109.52088 * 177.55689 * 17 16 15 19 19 C 1.42902 * 113.99903 * 150.00155 * 18 17 16 20 20 C 1.53786 * 113.61284 * 209.99760 * 19 18 17 21 21 C 1.53781 * 87.17350 * 220.06071 * 20 19 18 22 22 C 1.53782 * 87.08260 * 25.39213 * 21 20 19 23 23 C 1.53122 * 109.15974 * 57.65312 * 17 16 15 24 24 C 1.46843 * 111.00423 * 294.21062 * 14 13 2 25 25 H 1.08995 * 109.47465 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46673 * 300.00117 * 1 2 3 27 27 H 1.08999 * 109.46599 * 59.99349 * 1 2 3 28 28 H 1.09001 * 109.47160 * 185.00212 * 4 2 1 29 29 H 1.09001 * 109.47133 * 305.00103 * 4 2 1 30 30 H 0.96999 * 119.99747 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.47470 * 174.99802 * 13 2 1 32 32 H 1.09002 * 109.47332 * 54.99914 * 13 2 1 33 33 H 1.08999 * 109.46152 * 65.82402 * 15 14 13 34 34 H 1.09004 * 109.45473 * 305.85792 * 15 14 13 35 35 H 1.09000 * 109.50745 * 180.88030 * 16 15 14 36 36 H 1.09004 * 109.50005 * 60.76446 * 16 15 14 37 37 H 1.08999 * 109.52488 * 297.68193 * 17 16 15 38 38 H 1.08993 * 112.90736 * 341.24804 * 19 18 17 39 39 H 1.09002 * 113.61357 * 105.46987 * 20 19 18 40 40 H 1.09002 * 113.61608 * 334.65149 * 20 19 18 41 41 H 1.09001 * 113.61695 * 139.93969 * 21 20 19 42 42 H 1.08997 * 113.61223 * 270.84552 * 21 20 19 43 43 H 1.08997 * 113.61668 * 89.11298 * 22 21 20 44 44 H 1.08998 * 113.61674 * 219.93807 * 22 21 20 45 45 H 1.08999 * 109.50546 * 62.28804 * 23 17 16 46 46 H 1.09005 * 109.50132 * 182.40141 * 23 17 16 47 47 H 1.09003 * 109.46288 * 294.17520 * 24 14 13 48 48 H 1.09012 * 109.46007 * 54.14827 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0573 -2.4766 6 1 1.0800 0.9743 -2.3756 7 6 1.9923 -0.4020 -3.7284 8 7 2.6754 -1.5191 -3.8513 9 14 1.4976 0.5625 -5.2497 10 1 0.7403 1.7736 -4.8434 11 1 2.7154 0.9671 -5.9970 12 1 0.6433 -0.2867 -6.1181 13 6 2.0400 -0.7213 1.2492 14 7 1.6515 0.0372 2.4456 15 6 1.9124 -0.7357 3.6666 16 6 1.3640 0.0214 4.8782 17 6 2.0397 1.3926 4.9657 18 8 1.4905 2.1265 6.0620 19 6 2.4059 3.0438 6.6642 20 6 2.1519 3.2726 8.1635 21 6 2.4637 4.7573 7.9120 22 6 2.0267 4.5215 6.4566 23 6 1.7933 2.1583 3.6627 24 6 2.3293 1.3392 2.4864 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8899 28 1 3.1263 -0.7995 -1.2056 29 1 1.6053 -1.7197 -1.2952 30 1 2.9220 -1.8423 -4.7320 31 1 3.1263 -0.7996 1.2055 32 1 1.6054 -1.7199 1.2951 33 1 2.9867 -0.8785 3.7834 34 1 1.4229 -1.7068 3.5931 35 1 1.5717 -0.5452 5.7860 36 1 0.2874 0.1524 4.7687 37 1 3.1114 1.2618 5.1154 38 1 3.4463 2.8225 6.4263 39 1 2.8769 2.7776 8.8097 40 1 1.1208 3.0879 8.4649 41 1 1.8121 5.4390 8.4586 42 1 3.5200 5.0053 8.0159 43 1 0.9609 4.6780 6.2899 44 1 2.6496 5.0357 5.7248 45 1 0.7236 2.3230 3.5341 46 1 2.3078 3.1185 3.7020 47 1 3.4017 1.1867 2.6087 48 1 2.1425 1.8752 1.5557 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602698051.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:15 Heat of formation + Delta-G solvation = -47.249485 kcal Electronic energy + Delta-G solvation = -22613.306913 eV Core-core repulsion = 19474.849818 eV Total energy + Delta-G solvation = -3138.457096 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.85759 -38.67392 -36.43772 -34.75851 -32.46517 -31.01293 -30.75768 -26.87392 -25.97667 -25.83848 -24.87695 -23.46963 -23.02663 -21.88274 -20.29858 -19.46750 -18.76466 -17.38423 -16.44783 -16.03875 -15.47525 -14.96401 -14.86474 -14.48552 -14.45815 -14.14717 -13.68737 -13.32401 -12.97655 -12.72754 -12.68418 -12.35995 -12.18835 -12.10083 -11.64112 -11.60737 -11.36237 -11.20359 -11.14945 -11.03706 -10.83680 -10.75413 -10.66806 -10.58636 -10.37462 -10.25257 -10.18048 -9.62340 -9.37501 -9.10098 -8.91474 -8.31430 -7.98981 -5.96239 -3.97039 3.32935 3.40563 3.44787 3.50653 4.14188 4.31423 4.35611 4.49853 4.57900 4.59881 4.77066 4.85093 5.03747 5.06371 5.23171 5.36962 5.38490 5.39756 5.46597 5.49919 5.56501 5.58458 5.64906 5.66659 5.72635 5.87071 5.89056 5.91137 5.96814 6.06064 6.11292 6.16373 6.22074 6.32252 6.43859 6.58961 6.74084 7.04803 7.17840 7.21456 7.24350 7.42689 7.46868 7.71807 7.87845 8.04426 8.48751 9.09671 9.66321 11.15375 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031635 B = 0.002883 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.895438 B = 9709.949044 C =10226.789539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 H 0.055 0.945 4 C 0.026 3.974 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.061 3.939 14 N -0.534 5.534 15 C 0.058 3.942 16 C -0.111 4.111 17 C 0.090 3.910 18 O -0.367 6.367 19 C 0.062 3.938 20 C -0.139 4.139 21 C -0.143 4.143 22 C -0.157 4.157 23 C -0.134 4.134 24 C 0.055 3.945 25 H 0.039 0.961 26 H 0.042 0.958 27 H 0.052 0.948 28 H 0.012 0.988 29 H 0.016 0.984 30 H 0.258 0.742 31 H 0.028 0.972 32 H 0.069 0.931 33 H 0.028 0.972 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.063 0.937 47 H 0.028 0.972 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.341 7.948 23.111 24.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.100 4.100 3 H 0.074 0.926 4 C -0.011 4.011 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.066 4.066 14 N -0.259 5.259 15 C -0.071 4.071 16 C -0.149 4.149 17 C 0.032 3.968 18 O -0.285 6.285 19 C 0.004 3.996 20 C -0.176 4.176 21 C -0.181 4.181 22 C -0.194 4.194 23 C -0.172 4.172 24 C -0.073 4.073 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.030 0.970 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.108 0.892 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.081 0.919 47 H 0.046 0.954 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.277 7.887 23.020 24.335 hybrid contribution 1.015 0.312 -1.040 1.486 sum 0.738 8.198 21.980 23.471 Atomic orbital electron populations 1.21575 0.95727 1.00501 1.00150 1.21229 0.96003 0.99005 0.93727 0.92620 1.19138 0.95862 0.95602 0.90523 1.21274 1.34369 1.08242 0.90959 0.92530 1.25025 0.95384 0.95109 0.99101 1.69978 1.39261 1.21272 1.23218 0.86583 0.78230 0.80157 0.83323 1.19744 1.21144 1.21094 1.22309 0.97545 0.97235 0.89509 1.61966 1.58399 1.03555 1.01981 1.22026 0.98233 0.97110 0.89689 1.21644 1.02013 0.93806 0.97431 1.22282 0.96453 0.91798 0.86239 1.87967 1.38525 1.54817 1.47237 1.23803 0.93211 0.88965 0.93588 1.23219 1.02835 0.96027 0.95542 1.22660 1.01525 0.96694 0.97181 1.23516 1.02588 0.96534 0.96807 1.22091 1.03142 0.98075 0.93870 1.22086 0.95165 0.91014 0.99064 0.94229 0.93888 0.92849 0.97003 0.96582 0.93189 0.95412 0.91231 0.95349 0.90310 0.91400 0.90197 0.92797 0.89841 0.91267 0.89224 0.90863 0.90130 0.89230 0.91377 0.90243 0.91856 0.95425 0.89478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 2 C -0.08 -1.66 2.26 -90.62 -0.20 -1.87 16 3 H 0.06 1.16 6.22 -51.93 -0.32 0.84 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 5 C -0.51 -14.35 8.41 -34.44 -0.29 -14.64 16 6 H 0.06 1.56 7.05 -52.49 -0.37 1.19 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.06 1.07 4.35 -3.83 -0.02 1.05 16 14 N -0.53 -7.99 4.11 -234.68 -0.96 -8.96 16 15 C 0.06 0.73 5.46 -3.84 -0.02 0.71 16 16 C -0.11 -1.27 5.75 -26.65 -0.15 -1.42 16 17 C 0.09 1.02 2.67 -26.61 -0.07 0.95 16 18 O -0.37 -4.25 10.01 -35.23 -0.35 -4.61 16 19 C 0.06 0.58 4.28 -25.82 -0.11 0.46 16 20 C -0.14 -1.08 7.91 -25.92 -0.20 -1.29 16 21 C -0.14 -0.98 8.08 -25.92 -0.21 -1.19 16 22 C -0.16 -1.31 7.92 -25.82 -0.20 -1.51 16 23 C -0.13 -1.62 5.72 -26.65 -0.15 -1.78 16 24 C 0.05 0.77 5.30 -3.84 -0.02 0.75 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 27 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 28 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.03 0.50 8.12 -51.93 -0.42 0.07 16 32 H 0.07 1.21 7.99 -51.93 -0.41 0.79 16 33 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.96 8.02 -51.93 -0.42 0.54 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.58 7.42 -51.93 -0.39 0.20 16 38 H 0.08 0.71 7.46 -51.93 -0.39 0.32 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.09 1.33 6.12 -51.92 -0.32 1.01 16 LS Contribution 368.70 15.07 5.56 5.56 Total: -1.00 -29.79 368.70 -10.87 -40.66 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -9.28 Total: -3.24 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -1.55 Total: -19.83 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: -0.23 Total: -35.33 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: -0.35 Total: -4.61 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.79 -10.87 -40.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602698051.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.590 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds