Wall clock time and date at job start Tue Mar 31 2020 06:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46659 * 2 1 4 4 C 1.53000 * 109.46904 * 119.99259 * 2 1 3 5 5 C 1.50702 * 109.47382 * 295.00598 * 4 2 1 6 6 H 1.07996 * 119.99778 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00127 * 179.97438 * 5 4 2 8 8 N 1.31522 * 119.99864 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00217 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46846 * 60.00164 * 9 7 5 11 11 H 1.48496 * 109.47126 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.46921 * 300.00156 * 9 7 5 13 13 C 1.52991 * 109.47605 * 239.99793 * 2 1 3 14 14 N 1.46902 * 109.47371 * 178.02852 * 13 2 1 15 15 C 1.46844 * 110.99961 * 183.78192 * 14 13 2 16 16 C 1.53042 * 109.52200 * 185.84024 * 15 14 13 17 17 C 1.53118 * 109.27498 * 300.81828 * 16 15 14 18 18 O 1.42903 * 109.52129 * 177.55769 * 17 16 15 19 19 C 1.42900 * 114.00192 * 150.12444 * 18 17 16 20 20 C 1.53777 * 113.61779 * 210.00203 * 19 18 17 21 21 C 1.53782 * 87.17364 * 220.06297 * 20 19 18 22 22 C 1.53783 * 87.08087 * 25.39185 * 21 20 19 23 23 C 1.53119 * 109.21129 * 57.62482 * 17 16 15 24 24 C 1.46840 * 110.99875 * 307.99411 * 14 13 2 25 25 H 1.08999 * 109.47002 * 185.08342 * 1 2 3 26 26 H 1.08993 * 109.47681 * 305.08839 * 1 2 3 27 27 H 1.09000 * 109.47082 * 65.09115 * 1 2 3 28 28 H 1.08999 * 109.46966 * 55.00495 * 4 2 1 29 29 H 1.09004 * 109.46980 * 175.00031 * 4 2 1 30 30 H 0.96994 * 119.99981 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.47499 * 58.02569 * 13 2 1 32 32 H 1.09005 * 109.47165 * 298.03057 * 13 2 1 33 33 H 1.09000 * 109.46712 * 65.82515 * 15 14 13 34 34 H 1.09003 * 109.45442 * 305.84755 * 15 14 13 35 35 H 1.09003 * 109.50051 * 180.87842 * 16 15 14 36 36 H 1.08999 * 109.50189 * 60.76333 * 16 15 14 37 37 H 1.08995 * 109.52556 * 297.68614 * 17 16 15 38 38 H 1.09004 * 112.90417 * 341.26091 * 19 18 17 39 39 H 1.08995 * 113.61250 * 105.47577 * 20 19 18 40 40 H 1.09003 * 113.61406 * 334.65644 * 20 19 18 41 41 H 1.08996 * 113.61188 * 139.93572 * 21 20 19 42 42 H 1.08996 * 113.61343 * 270.84643 * 21 20 19 43 43 H 1.08999 * 113.61667 * 89.11537 * 22 21 20 44 44 H 1.09005 * 113.61339 * 219.93533 * 22 21 20 45 45 H 1.09004 * 109.50563 * 62.32051 * 23 17 16 46 46 H 1.09000 * 109.49852 * 182.42975 * 23 17 16 47 47 H 1.09008 * 109.46291 * 294.17534 * 24 14 13 48 48 H 1.09000 * 109.46473 * 54.15375 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6412 0.0573 2.4766 6 1 1.0805 0.9747 2.3756 7 6 1.9921 -0.4019 3.7284 8 7 2.6754 -1.5190 3.8514 9 14 1.4984 0.5632 5.2497 10 1 0.0185 0.6708 5.3089 11 1 1.9933 -0.1368 6.4622 12 1 2.0915 1.9232 5.1871 13 6 2.0401 -0.7212 -1.2491 14 7 3.5084 -0.6801 -1.2731 15 6 4.0317 -1.2851 -2.5045 16 6 5.5586 -1.3567 -2.4303 17 6 6.1228 0.0557 -2.2537 18 8 7.5447 -0.0104 -2.1267 19 6 8.2265 1.1457 -2.6172 20 6 9.6333 0.8467 -3.1614 21 6 10.0868 2.1560 -2.4943 22 6 8.9156 1.9707 -1.5150 23 6 5.5250 0.6829 -0.9912 24 6 3.9990 0.6938 -1.1064 25 1 -0.3633 -1.0236 0.0911 26 1 -0.3634 0.5907 0.8408 27 1 -0.3633 0.4328 -0.9321 28 1 1.6054 -1.7196 1.2953 29 1 3.1263 -0.7993 1.2057 30 1 2.9220 -1.8422 4.7320 31 1 1.6482 -0.2284 -2.1388 32 1 1.7059 -1.7586 -1.2316 33 1 3.7378 -0.6782 -3.3608 34 1 3.6260 -2.2907 -2.6157 35 1 5.9477 -1.7916 -3.3510 36 1 5.8531 -1.9750 -1.5823 37 1 5.8624 0.6631 -3.1205 38 1 7.6150 1.7441 -3.2927 39 1 9.6940 0.8672 -4.2494 40 1 10.0886 -0.0443 -2.7287 41 1 11.0663 2.0885 -2.0211 42 1 9.9849 3.0310 -3.1361 43 1 9.1735 1.3870 -0.6313 44 1 8.3978 2.8988 -1.2729 45 1 5.8191 0.0977 -0.1198 46 1 5.8903 1.7043 -0.8843 47 1 3.7052 1.2917 -1.9693 48 1 3.5698 1.1256 -0.2023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602698052.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:17 Heat of formation + Delta-G solvation = -42.366402 kcal Electronic energy + Delta-G solvation = -23040.387043 eV Core-core repulsion = 19902.141694 eV Total energy + Delta-G solvation = -3138.245349 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.71597 -38.58707 -36.36160 -34.63274 -32.34466 -30.94109 -30.57985 -26.98655 -25.84920 -25.71901 -24.65627 -23.44185 -22.66725 -21.99129 -20.19223 -19.38475 -18.58516 -17.23472 -16.27539 -16.02974 -15.45114 -14.80918 -14.70896 -14.41206 -14.34449 -13.99316 -13.67039 -13.19461 -12.84410 -12.57916 -12.51282 -12.27194 -12.05576 -11.90413 -11.63203 -11.48093 -11.32083 -11.22889 -10.96318 -10.91876 -10.83107 -10.74452 -10.54398 -10.51150 -10.30661 -10.19846 -10.02887 -9.61172 -9.21666 -9.03373 -8.81183 -8.22051 -7.77577 -5.86503 -3.87643 3.38714 3.43648 3.45416 3.66803 4.28586 4.44410 4.48865 4.55052 4.70542 4.73520 4.93579 5.03841 5.16204 5.21899 5.39643 5.48573 5.49201 5.50946 5.59018 5.63528 5.68342 5.70677 5.76657 5.79706 5.86422 5.87026 6.02081 6.02984 6.08877 6.12626 6.18628 6.26688 6.34015 6.38020 6.46478 6.54595 6.61462 6.98902 7.06119 7.29904 7.38019 7.56136 7.60501 7.87260 8.07641 8.22513 8.58173 9.20306 9.74605 11.24335 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016822 B = 0.003987 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.068827 B = 7021.322142 C = 8091.067752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.091 4.091 3 H 0.057 0.943 4 C 0.036 3.964 5 C -0.517 4.517 6 H 0.051 0.949 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.884 3.116 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.279 1.279 13 C 0.065 3.935 14 N -0.525 5.525 15 C 0.060 3.940 16 C -0.112 4.112 17 C 0.092 3.908 18 O -0.366 6.366 19 C 0.063 3.937 20 C -0.138 4.138 21 C -0.143 4.143 22 C -0.157 4.157 23 C -0.135 4.135 24 C 0.055 3.945 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.027 0.973 28 H 0.010 0.990 29 H 0.033 0.967 30 H 0.258 0.742 31 H 0.015 0.985 32 H 0.070 0.930 33 H 0.024 0.976 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.062 0.938 47 H 0.020 0.980 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.643 5.084 -16.303 19.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.110 4.110 3 H 0.075 0.925 4 C -0.001 4.001 5 C -0.555 4.555 6 H 0.069 0.931 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.713 3.287 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.062 4.062 14 N -0.250 5.250 15 C -0.068 4.068 16 C -0.150 4.150 17 C 0.034 3.966 18 O -0.285 6.285 19 C 0.005 3.995 20 C -0.176 4.176 21 C -0.181 4.181 22 C -0.195 4.195 23 C -0.173 4.173 24 C -0.073 4.073 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.046 0.954 28 H 0.029 0.971 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.033 0.967 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.080 0.920 47 H 0.038 0.962 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.985 4.521 -15.697 19.145 hybrid contribution -0.712 1.211 0.176 1.416 sum 9.273 5.731 -15.522 18.967 Atomic orbital electron populations 1.21684 0.96340 1.01290 0.99583 1.21371 0.94598 0.99168 0.95843 0.92462 1.19054 0.97426 0.94589 0.89040 1.21280 1.34587 1.08199 0.91445 0.93114 1.24981 0.95452 0.95053 0.98813 1.69969 1.38954 1.21114 1.23197 0.86789 0.78761 0.80205 0.82979 1.20465 1.21428 1.20446 1.22229 0.85820 1.00914 0.97219 1.61847 1.09253 1.18908 1.34953 1.22008 0.94265 0.99842 0.90716 1.21640 0.94500 0.96025 1.02818 1.22278 0.80271 0.97174 0.96869 1.87980 1.18440 1.39293 1.82739 1.23776 0.92439 0.87673 0.95626 1.23215 0.95542 0.98598 1.00241 1.22658 0.98818 0.97661 0.98915 1.23522 0.97072 1.00339 0.98536 1.22092 0.95182 1.00768 0.99247 1.22135 0.94405 0.89278 1.01439 0.93431 0.92035 0.95373 0.97113 0.94844 0.93194 0.96656 0.91205 0.95747 0.90479 0.91547 0.89900 0.93095 0.89983 0.91377 0.89204 0.90900 0.90230 0.89104 0.91393 0.89738 0.91962 0.96168 0.88463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.92 37.16 0.33 -2.14 16 2 C -0.09 -1.85 1.85 -90.62 -0.17 -2.02 16 3 H 0.06 1.17 6.07 -51.93 -0.32 0.86 16 4 C 0.04 0.92 4.30 -27.88 -0.12 0.80 16 5 C -0.52 -14.52 8.47 -34.44 -0.29 -14.82 16 6 H 0.05 1.39 7.06 -52.49 -0.37 1.02 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -27.23 13.29 55.43 0.74 -26.50 16 9 Si 0.88 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.07 1.15 4.54 -3.83 -0.02 1.13 16 14 N -0.53 -8.99 4.00 -234.67 -0.94 -9.93 16 15 C 0.06 0.84 5.46 -3.83 -0.02 0.82 16 16 C -0.11 -1.50 5.75 -26.65 -0.15 -1.66 16 17 C 0.09 1.23 2.67 -26.61 -0.07 1.15 16 18 O -0.37 -5.00 10.01 -35.23 -0.35 -5.35 16 19 C 0.06 0.68 4.28 -25.83 -0.11 0.57 16 20 C -0.14 -1.27 7.91 -25.92 -0.20 -1.47 16 21 C -0.14 -1.18 8.09 -25.92 -0.21 -1.39 16 22 C -0.16 -1.60 7.92 -25.82 -0.20 -1.80 16 23 C -0.13 -2.03 5.72 -26.65 -0.15 -2.19 16 24 C 0.06 0.90 4.99 -3.84 -0.02 0.88 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 1.23 7.10 -51.93 -0.37 0.86 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.03 0.93 7.47 -51.93 -0.39 0.54 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 31 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 1.03 8.12 -51.93 -0.42 0.61 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.05 0.62 7.43 -51.93 -0.39 0.24 16 38 H 0.08 0.81 7.46 -51.93 -0.39 0.42 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.02 0.30 8.14 -51.92 -0.42 -0.12 16 48 H 0.10 1.81 5.74 -51.93 -0.30 1.51 16 LS Contribution 367.64 15.07 5.54 5.54 Total: -1.00 -30.21 367.64 -10.80 -41.02 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -9.26 Total: -1.14 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -1.51 Total: -20.55 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: -0.20 Total: -36.42 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.35 Total: -5.35 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.21 -10.80 -41.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602698052.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.351 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds