Wall clock time and date at job start Tue Mar 31 2020 06:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47354 * 2 1 4 4 C 1.53003 * 109.46955 * 240.00317 * 2 1 3 5 5 C 1.50701 * 109.47163 * 65.00205 * 4 2 1 6 6 H 1.08002 * 119.99606 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99660 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99539 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 120.00595 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47284 * 89.99841 * 9 7 5 11 11 H 1.48494 * 109.47593 * 210.00094 * 9 7 5 12 12 H 1.48504 * 109.46940 * 330.00028 * 9 7 5 13 13 C 1.53001 * 109.47352 * 120.00404 * 2 1 3 14 14 N 1.46906 * 109.46976 * 295.80980 * 13 2 1 15 15 C 1.47445 * 110.99985 * 317.49643 * 14 13 2 16 16 C 1.54310 * 107.23603 * 123.25691 * 15 14 13 17 17 C 1.55269 * 103.08573 * 22.20301 * 16 15 14 18 18 C 1.47848 * 110.99777 * 78.33636 * 14 13 2 19 19 H 1.08995 * 110.37477 * 332.57318 * 18 14 13 20 20 C 1.53000 * 110.37268 * 94.80972 * 18 14 13 21 21 H 1.08999 * 109.57679 * 58.28725 * 20 18 14 22 22 C 1.53181 * 109.51891 * 178.44558 * 20 18 14 23 23 C 1.53184 * 109.03193 * 176.88291 * 22 20 18 24 24 C 1.53090 * 109.21732 * 302.98864 * 23 22 20 25 25 O 1.43037 * 109.34513 * 57.57536 * 24 23 22 26 26 C 1.42902 * 114.13620 * 298.88448 * 25 24 23 27 27 H 1.09000 * 109.46767 * 193.03245 * 1 2 3 28 28 H 1.09000 * 109.46868 * 313.03091 * 1 2 3 29 29 H 1.08993 * 109.46999 * 73.03248 * 1 2 3 30 30 H 1.08999 * 109.46913 * 185.00098 * 4 2 1 31 31 H 1.08998 * 109.46988 * 304.99831 * 4 2 1 32 32 H 0.96999 * 119.99908 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47135 * 175.80917 * 13 2 1 34 34 H 1.08997 * 109.47346 * 55.80679 * 13 2 1 35 35 H 1.09003 * 109.88457 * 242.66233 * 15 14 13 36 36 H 1.09002 * 109.88656 * 3.84451 * 15 14 13 37 37 H 1.08997 * 110.71151 * 140.66360 * 16 15 14 38 38 H 1.09003 * 110.70588 * 263.72778 * 16 15 14 39 39 H 1.08999 * 111.08555 * 206.38807 * 17 16 15 40 40 H 1.08993 * 110.94216 * 82.53360 * 17 16 15 41 41 H 1.08998 * 109.54327 * 57.02157 * 22 20 18 42 42 H 1.08993 * 109.61846 * 296.79204 * 22 20 18 43 43 H 1.08995 * 109.52214 * 62.92700 * 23 22 20 44 44 H 1.08997 * 109.51781 * 183.05059 * 23 22 20 45 45 H 1.08995 * 109.48366 * 177.62481 * 24 23 22 46 46 H 1.09001 * 109.47648 * 297.65839 * 24 23 22 47 47 H 1.09003 * 109.47960 * 301.17954 * 26 25 24 48 48 H 1.08997 * 109.48634 * 181.14174 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0572 -2.4766 6 1 1.0800 0.9743 -2.3756 7 6 1.9924 -0.4021 -3.7283 8 7 1.6440 0.2770 -4.7994 9 14 2.9626 -1.9887 -3.9030 10 1 2.0234 -3.1331 -4.0191 11 1 3.8107 -1.9189 -5.1199 12 1 3.8252 -2.1755 -2.7086 13 6 2.0401 -0.7213 1.2492 14 7 1.6348 0.0271 2.4466 15 6 1.8206 1.4767 2.2516 16 6 0.4535 2.1497 2.4950 17 6 -0.3003 1.1093 3.3669 18 6 0.2154 -0.2258 2.7742 19 1 -0.3422 -0.4814 1.8732 20 6 0.0991 -1.3477 3.8079 21 1 0.6526 -1.0752 4.7065 22 6 -1.3752 -1.5669 4.1616 23 6 -1.4853 -2.7428 5.1371 24 6 -0.8503 -3.9837 4.5042 25 8 0.5116 -3.7011 4.1706 26 6 0.6740 -2.6416 3.2255 27 1 -0.3633 -1.0012 0.2317 28 1 -0.3633 0.7013 0.7512 29 1 -0.3633 0.2999 -0.9829 30 1 3.1263 -0.7994 -1.2057 31 1 1.6054 -1.7197 -1.2952 32 1 1.8913 -0.0459 -5.6800 33 1 3.1275 -0.7868 1.2124 34 1 1.6168 -1.7250 1.2875 35 1 2.5527 1.8559 2.9647 36 1 2.1550 1.6740 1.2331 37 1 0.5766 3.0887 3.0347 38 1 -0.0684 2.3142 1.5523 39 1 -1.3792 1.2010 3.2420 40 1 -0.0207 1.2046 4.4161 41 1 -1.9381 -1.7909 3.2555 42 1 -1.7773 -0.6675 4.6278 43 1 -0.9638 -2.4985 6.0625 44 1 -2.5354 -2.9405 5.3521 45 1 -0.8885 -4.8124 5.2112 46 1 -1.3976 -4.2513 3.6004 47 1 0.1465 -2.8916 2.3050 48 1 1.7339 -2.5044 3.0116 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602703326.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:57 Heat of formation + Delta-G solvation = -47.064073 kcal Electronic energy + Delta-G solvation = -24090.053494 eV Core-core repulsion = 20951.604439 eV Total energy + Delta-G solvation = -3138.449055 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.42537 -38.69904 -35.19280 -33.76951 -32.40244 -31.82267 -30.77600 -27.90398 -27.41872 -25.61303 -25.10778 -23.57300 -22.33567 -20.96648 -20.42622 -19.72713 -18.85195 -16.85177 -16.64057 -16.08007 -15.94666 -15.12037 -14.80342 -14.37941 -14.24556 -13.98514 -13.85558 -13.37364 -13.13128 -12.82196 -12.64154 -12.40687 -12.30965 -11.96361 -11.70793 -11.42839 -11.34686 -11.24513 -11.17980 -11.06287 -10.93686 -10.71698 -10.65003 -10.42321 -10.30417 -10.19533 -9.78921 -9.68097 -9.49698 -9.36224 -9.13651 -8.54110 -7.78079 -6.05045 -4.02330 3.30020 3.38004 3.41801 3.86295 4.13737 4.44804 4.62999 4.70253 4.76897 4.83983 4.88724 5.10471 5.13647 5.19000 5.28549 5.37653 5.42349 5.49689 5.54537 5.60273 5.64631 5.68351 5.69866 5.77301 5.81693 5.85042 5.89231 5.93477 6.00265 6.08564 6.10227 6.14542 6.18802 6.30695 6.36328 6.42385 6.46849 6.69180 6.87909 7.03356 7.19016 7.24762 7.26790 7.40314 7.47303 7.79218 8.53283 8.99470 9.58121 11.08313 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018582 B = 0.004894 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.432740 B = 5719.794220 C = 6605.591373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 H 0.075 0.925 4 C -0.007 4.007 5 C -0.515 4.515 6 H 0.072 0.928 7 C 0.066 3.934 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.040 3.960 14 N -0.522 5.522 15 C 0.027 3.973 16 C -0.143 4.143 17 C -0.120 4.120 18 C 0.050 3.950 19 H 0.089 0.911 20 C -0.101 4.101 21 H 0.080 0.920 22 C -0.118 4.118 23 C -0.154 4.154 24 C 0.058 3.942 25 O -0.385 6.385 26 C 0.064 3.936 27 H 0.041 0.959 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.015 0.985 31 H 0.010 0.990 32 H 0.262 0.738 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.089 0.911 46 H 0.048 0.952 47 H 0.046 0.954 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.693 -2.700 19.849 20.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 H 0.092 0.908 4 C -0.045 4.045 5 C -0.553 4.553 6 H 0.090 0.910 7 C -0.135 4.135 8 N -0.544 5.544 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C -0.088 4.088 14 N -0.245 5.245 15 C -0.100 4.100 16 C -0.181 4.181 17 C -0.158 4.158 18 C -0.058 4.058 19 H 0.107 0.893 20 C -0.121 4.121 21 H 0.099 0.901 22 C -0.156 4.156 23 C -0.191 4.191 24 C -0.019 4.019 25 O -0.304 6.304 26 C -0.012 4.012 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.033 0.967 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.107 0.893 46 H 0.066 0.934 47 H 0.064 0.936 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.187 -2.978 20.145 21.014 hybrid contribution -0.255 -0.368 -1.121 1.207 sum -5.442 -3.346 19.024 20.068 Atomic orbital electron populations 1.22164 0.96438 0.99644 1.02338 1.21746 0.95523 1.00536 0.95485 0.90757 1.19562 0.95916 0.95692 0.93296 1.21122 1.35403 1.09544 0.89186 0.91019 1.25024 0.95593 0.96940 0.95946 1.69915 1.47130 1.39338 0.98032 0.86811 0.80685 0.84267 0.77716 1.20407 1.21468 1.18980 1.22652 1.00693 0.97353 0.88057 1.63669 1.18950 1.06893 1.34961 1.23019 0.96903 0.87693 1.02388 1.22856 0.96725 0.98408 1.00128 1.22698 0.99357 0.94235 0.99531 1.23156 0.89968 0.94361 0.98282 0.89335 1.21688 0.95655 0.95245 0.99481 0.90143 1.21648 0.96466 0.98247 0.99272 1.22166 1.01116 0.96246 0.99615 1.22568 0.83481 0.96738 0.99103 1.87963 1.25190 1.54004 1.63205 1.22835 1.02422 0.85562 0.90377 0.94003 0.93391 0.91049 0.96652 0.97208 0.92812 0.90994 0.91154 0.91366 0.90287 0.91403 0.90948 0.91395 0.91189 0.91915 0.91426 0.91206 0.91202 0.89322 0.93390 0.93576 0.87781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 7.42 37.16 0.28 -2.36 16 2 C -0.11 -2.12 1.91 -90.62 -0.17 -2.30 16 3 H 0.07 1.44 5.37 -51.93 -0.28 1.17 16 4 C -0.01 -0.16 3.52 -27.88 -0.10 -0.25 16 5 C -0.51 -14.27 8.77 -34.44 -0.30 -14.57 16 6 H 0.07 2.14 7.40 -52.49 -0.39 1.75 16 7 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 8 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 9 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 12 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 13 C 0.04 0.64 4.45 -3.82 -0.02 0.62 16 14 N -0.52 -7.31 4.82 -223.38 -1.08 -8.38 16 15 C 0.03 0.37 6.21 -2.84 -0.02 0.35 16 16 C -0.14 -1.70 6.30 -24.84 -0.16 -1.86 16 17 C -0.12 -1.33 5.39 -24.52 -0.13 -1.46 16 18 C 0.05 0.63 1.34 -66.18 -0.09 0.54 16 19 H 0.09 1.22 3.70 -51.93 -0.19 1.03 16 20 C -0.10 -1.18 2.13 -90.48 -0.19 -1.38 16 21 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 22 C -0.12 -1.17 5.06 -26.54 -0.13 -1.30 16 23 C -0.15 -1.38 6.13 -26.59 -0.16 -1.54 16 24 C 0.06 0.59 6.86 37.20 0.26 0.84 16 25 O -0.38 -5.12 10.77 -35.23 -0.38 -5.49 16 26 C 0.06 0.83 4.72 37.21 0.18 1.01 16 27 H 0.04 0.70 7.15 -51.93 -0.37 0.33 16 28 H 0.05 0.73 3.55 -51.93 -0.18 0.55 16 29 H 0.07 1.47 6.68 -51.93 -0.35 1.12 16 30 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 31 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 1.10 5.36 -51.93 -0.28 0.82 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.20 4.79 -51.93 -0.25 0.95 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.93 6.65 -51.93 -0.35 0.59 16 39 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.07 0.75 8.06 -51.93 -0.42 0.33 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.61 7.45 -51.93 -0.39 0.22 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.05 0.61 7.85 -51.93 -0.41 0.20 16 48 H 0.10 1.44 6.46 -51.93 -0.34 1.11 16 LS Contribution 338.35 15.07 5.10 5.10 Total: -1.00 -29.71 338.35 -9.46 -39.16 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -8.34 Total: 1.37 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: -0.87 Total: -21.85 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: -0.30 Total: -35.35 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.38 Total: -5.49 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.71 -9.46 -39.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602703326.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.899 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds