Wall clock time and date at job start Tue Mar 31 2020 05:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46946 * 2 1 4 4 C 1.53006 * 109.46713 * 119.99619 * 2 1 3 5 5 C 1.50699 * 109.47083 * 294.99932 * 4 2 1 6 6 H 1.08002 * 120.00378 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99803 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00163 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99720 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47270 * 60.00409 * 9 7 5 11 11 H 1.48504 * 109.47084 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47575 * 300.00175 * 9 7 5 13 13 C 1.52999 * 109.47443 * 239.99379 * 2 1 3 14 14 N 1.46901 * 109.46807 * 176.55883 * 13 2 1 15 15 C 1.47016 * 110.99957 * 287.65946 * 14 13 2 16 16 C 1.53099 * 109.34424 * 177.31937 * 15 14 13 17 17 H 1.08999 * 109.51342 * 297.27270 * 16 15 14 18 18 C 1.52993 * 109.51506 * 177.11557 * 16 15 14 19 19 O 1.43095 * 109.21781 * 57.18891 * 16 15 14 20 20 C 1.42625 * 113.75780 * 302.01967 * 19 16 15 21 21 C 1.53953 * 109.85615 * 178.75774 * 20 19 16 22 22 C 1.54955 * 104.13295 * 95.95699 * 21 20 19 23 23 C 1.54915 * 102.78576 * 37.68125 * 22 21 20 24 24 C 1.53595 * 110.02345 * 296.18656 * 20 19 16 25 25 C 1.47091 * 110.99377 * 164.09104 * 14 13 2 26 26 H 1.09007 * 109.47330 * 185.52811 * 1 2 3 27 27 H 1.08997 * 109.47618 * 305.53159 * 1 2 3 28 28 H 1.09001 * 109.47067 * 65.53256 * 1 2 3 29 29 H 1.09004 * 109.47233 * 55.00064 * 4 2 1 30 30 H 1.09005 * 109.46897 * 175.00196 * 4 2 1 31 31 H 0.96999 * 120.00021 * 179.97438 * 8 7 5 32 32 H 1.08994 * 109.47171 * 296.56041 * 13 2 1 33 33 H 1.09000 * 109.46575 * 56.56196 * 13 2 1 34 34 H 1.08996 * 109.49506 * 297.28071 * 15 14 13 35 35 H 1.08999 * 109.49055 * 57.36502 * 15 14 13 36 36 H 1.09003 * 109.46812 * 300.25162 * 18 16 15 37 37 H 1.08996 * 109.47488 * 60.25373 * 18 16 15 38 38 H 1.08996 * 109.47254 * 180.25676 * 18 16 15 39 39 H 1.09001 * 110.50191 * 214.62359 * 21 20 19 40 40 H 1.09003 * 110.49787 * 337.29869 * 21 20 19 41 41 H 1.09000 * 110.75144 * 279.35399 * 22 21 20 42 42 H 1.08999 * 110.91014 * 156.07659 * 22 21 20 43 43 H 1.09007 * 110.48472 * 203.53870 * 23 22 21 44 44 H 1.09000 * 110.60146 * 80.95404 * 23 22 21 45 45 H 1.09001 * 110.05715 * 359.90031 * 24 20 19 46 46 H 1.09002 * 110.05356 * 121.33483 * 24 20 19 47 47 H 1.08995 * 109.50880 * 301.65695 * 25 14 13 48 48 H 1.09004 * 109.50231 * 61.78508 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.6412 0.0572 2.4766 6 1 1.0798 0.9743 2.3757 7 6 1.9921 -0.4021 3.7284 8 7 2.6752 -1.5191 3.8514 9 14 1.4973 0.5624 5.2497 10 1 0.0172 0.6689 5.3086 11 1 1.9923 -0.1375 6.4623 12 1 2.0893 1.9229 5.1877 13 6 2.0401 -0.7214 -1.2491 14 7 3.5067 -0.6497 -1.2913 15 6 3.9584 0.7088 -1.6256 16 6 5.4883 0.7568 -1.5936 17 1 5.8384 0.5384 -0.5848 18 6 5.9648 2.1494 -2.0109 19 8 6.0092 -0.2187 -2.5018 20 6 5.5804 -1.5501 -2.2231 21 6 6.1657 -2.5175 -3.2679 22 6 7.4401 -3.0809 -2.5899 23 6 7.0041 -3.2301 -1.1109 24 6 6.1114 -1.9977 -0.8531 25 6 4.0550 -1.6288 -2.2422 26 1 -0.3634 -1.0229 0.0990 27 1 -0.3634 0.5972 0.8363 28 1 -0.3633 0.4256 -0.9354 29 1 1.6052 -1.7198 1.2953 30 1 3.1263 -0.7994 1.2058 31 1 2.9224 -1.8420 4.7321 32 1 1.7280 -1.7652 -1.2187 33 1 1.6272 -0.2444 -2.1381 34 1 3.6070 0.9739 -2.6227 35 1 3.5572 1.4147 -0.8984 36 1 5.6121 2.3671 -3.0191 37 1 5.5676 2.8919 -1.3188 38 1 7.0541 2.1815 -1.9923 39 1 5.4604 -3.3206 -3.4819 40 1 6.4243 -1.9819 -4.1813 41 1 8.2681 -2.3777 -2.6794 42 1 7.7100 -4.0487 -3.0124 43 1 7.8736 -3.2155 -0.4536 44 1 6.4356 -4.1493 -0.9695 45 1 6.6988 -1.1987 -0.4006 46 1 5.2811 -2.2666 -0.2001 47 1 3.7387 -2.6316 -1.9552 48 1 3.6916 -1.4050 -3.2452 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602703608.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:09 Heat of formation + Delta-G solvation = -84.623555 kcal Electronic energy + Delta-G solvation = -24014.445152 eV Core-core repulsion = 20874.367395 eV Total energy + Delta-G solvation = -3140.077757 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.45564 -38.44805 -37.17167 -35.58886 -33.95216 -33.11363 -29.89129 -29.71348 -28.94285 -27.66117 -26.41582 -24.93664 -23.37729 -22.75140 -21.54635 -20.45810 -19.82614 -18.45143 -17.70015 -17.15872 -16.71360 -16.38169 -16.30048 -15.67521 -15.45835 -15.03389 -14.74029 -14.49635 -14.25150 -14.01348 -13.86247 -13.49091 -13.29857 -13.20250 -12.87326 -12.78506 -12.74618 -12.67088 -12.35789 -12.24841 -12.19124 -12.12273 -11.97529 -11.83708 -11.77159 -11.42996 -11.41838 -11.25159 -10.95228 -10.88555 -10.45956 -10.36722 -9.14610 -8.10711 -6.19043 1.39685 1.42058 1.49451 2.44587 2.68440 2.88392 3.22192 3.62256 3.70113 3.82400 3.90642 4.02956 4.12139 4.22441 4.26456 4.33864 4.42259 4.50058 4.53372 4.55081 4.65089 4.66660 4.71685 4.74776 4.78055 4.81853 4.87973 4.88651 4.95710 5.01726 5.08501 5.12511 5.19949 5.22559 5.26280 5.29484 5.38948 5.44329 5.46987 5.50061 5.65975 5.92392 6.03199 6.12861 6.18974 6.36357 6.38698 6.99127 7.47958 9.00450 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016946 B = 0.004967 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.956837 B = 5635.433731 C = 6045.270491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 H 0.051 0.949 4 C 0.051 3.949 5 C -0.528 4.528 6 H 0.056 0.944 7 C 0.000 4.000 8 N -0.933 5.933 9 Si 0.953 3.047 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.073 3.927 14 N -0.546 5.546 15 C 0.032 3.968 16 C 0.086 3.914 17 H 0.046 0.954 18 C -0.134 4.134 19 O -0.378 6.378 20 C 0.118 3.882 21 C -0.105 4.105 22 C -0.113 4.113 23 C -0.122 4.122 24 C -0.139 4.139 25 C 0.038 3.962 26 H 0.041 0.959 27 H 0.045 0.955 28 H 0.063 0.937 29 H -0.024 1.024 30 H 0.001 0.999 31 H 0.259 0.741 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.051 0.949 46 H 0.051 0.949 47 H 0.080 0.920 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.770 0.708 -16.209 17.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.095 4.095 3 H 0.069 0.931 4 C 0.014 3.986 5 C -0.567 4.567 6 H 0.074 0.926 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.779 3.221 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.195 1.195 13 C -0.054 4.054 14 N -0.270 5.270 15 C -0.096 4.096 16 C 0.028 3.972 17 H 0.064 0.936 18 C -0.192 4.192 19 O -0.298 6.298 20 C 0.078 3.922 21 C -0.143 4.143 22 C -0.150 4.150 23 C -0.160 4.160 24 C -0.177 4.177 25 C -0.090 4.090 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.082 0.918 29 H -0.005 1.005 30 H 0.020 0.980 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.099 0.901 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.128 0.530 -15.768 17.312 hybrid contribution -0.831 0.409 0.940 1.320 sum 6.297 0.939 -14.827 16.136 Atomic orbital electron populations 1.21610 0.94899 1.00995 1.00827 1.21066 0.95451 0.98434 0.94559 0.93089 1.18804 0.95184 0.93187 0.91449 1.21695 1.34063 1.08403 0.92505 0.92615 1.25868 0.95451 0.96041 1.02318 1.70112 1.40415 1.22934 1.23909 0.85684 0.78879 0.78867 0.78698 1.19306 1.21200 1.19462 1.22102 0.86171 1.00402 0.96740 1.62064 1.09942 1.05149 1.49828 1.22751 0.96287 0.90940 0.99639 1.22177 0.91677 0.90266 0.93054 0.93641 1.21697 1.02262 0.92566 1.02663 1.87898 1.71793 1.15883 1.54202 1.22041 0.91784 0.83139 0.95200 1.22340 0.97895 0.96949 0.97095 1.22456 0.96874 1.01624 0.94055 1.22362 0.98874 0.97070 0.97649 1.22584 0.99353 0.98651 0.97081 1.22766 0.95324 0.96903 0.94056 0.93963 0.93575 0.91782 1.00519 0.98043 0.93254 0.91822 0.93909 0.93798 0.90542 0.91220 0.90104 0.91180 0.88960 0.89997 0.91518 0.89262 0.91504 0.91228 0.92978 0.92981 0.90126 0.93840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 8.91 71.98 0.64 -3.97 16 2 C -0.08 -3.13 2.34 -10.79 -0.03 -3.15 16 3 H 0.05 2.12 6.61 -2.39 -0.02 2.11 16 4 C 0.05 2.71 4.39 29.85 0.13 2.84 16 5 C -0.53 -30.28 8.48 25.60 0.22 -30.06 16 6 H 0.06 3.07 7.06 -2.91 -0.02 3.05 16 7 C 0.00 0.02 5.46 84.66 0.46 0.48 16 8 N -0.93 -58.12 13.29 21.45 0.28 -57.84 16 9 Si 0.95 45.23 29.54 68.60 2.03 47.25 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 13 C 0.07 2.54 4.38 86.30 0.38 2.92 16 14 N -0.55 -18.89 3.62 -895.72 -3.25 -22.13 16 15 C 0.03 1.00 4.74 86.31 0.41 1.41 16 16 C 0.09 2.56 3.10 30.63 0.09 2.65 16 17 H 0.05 1.58 6.65 -2.39 -0.02 1.56 16 18 C -0.13 -3.06 9.57 71.98 0.69 -2.37 16 19 O -0.38 -11.16 9.85 -148.98 -1.47 -12.63 16 20 C 0.12 3.29 0.97 -10.35 -0.01 3.28 16 21 C -0.11 -2.22 6.09 31.58 0.19 -2.03 16 22 C -0.11 -2.21 6.91 31.92 0.22 -1.99 16 23 C -0.12 -2.96 6.84 31.70 0.22 -2.75 16 24 C -0.14 -4.34 5.48 31.25 0.17 -4.16 16 25 C 0.04 1.11 3.92 86.18 0.34 1.44 16 26 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 27 H 0.05 1.81 7.12 -2.39 -0.02 1.79 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 29 H -0.02 -1.39 8.14 -2.39 -0.02 -1.41 16 30 H 0.00 0.07 7.57 -2.38 -0.02 0.05 16 31 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.06 2.24 7.94 -2.39 -0.02 2.22 16 33 H 0.04 1.29 8.05 -2.39 -0.02 1.27 16 34 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 2.57 6.57 -2.39 -0.02 2.55 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.09 1.68 7.84 -2.39 -0.02 1.67 16 40 H 0.08 1.64 8.06 -2.39 -0.02 1.62 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.05 1.76 6.66 -2.39 -0.02 1.75 16 46 H 0.05 1.97 7.53 -2.39 -0.02 1.96 16 47 H 0.08 2.37 8.06 -2.39 -0.02 2.35 16 48 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -65.97 360.90 2.61 -63.36 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.89 Total: 17.44 kcal Atomic # 6 Polarization: -39.58 SS G_CDS: 4.13 Total: -35.45 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -2.96 Total: -79.97 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -1.47 Total: -12.63 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -65.97 2.61 -63.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602703608.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.266 kcal (2) G-P(sol) polarization free energy of solvation -65.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds