Wall clock time and date at job start Tue Mar 31 2020 05:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99583 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00273 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47042 * 89.99722 * 9 7 5 11 11 H 1.48506 * 109.47062 * 209.99913 * 9 7 5 12 12 H 1.48495 * 109.46994 * 329.99733 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.47022 * 111.00141 * 293.57550 * 14 13 2 16 16 C 1.53094 * 109.34830 * 177.31455 * 15 14 13 17 17 H 1.09004 * 109.51220 * 297.26554 * 16 15 14 18 18 C 1.52994 * 109.51703 * 177.10907 * 16 15 14 19 19 O 1.43104 * 109.22046 * 57.18489 * 16 15 14 20 20 C 1.42616 * 113.75202 * 302.01800 * 19 16 15 21 21 C 1.53964 * 109.85177 * 178.75554 * 20 19 16 22 22 C 1.54958 * 104.12909 * 95.96003 * 21 20 19 23 23 C 1.54919 * 102.78612 * 37.68069 * 22 21 20 24 24 C 1.53590 * 110.02963 * 296.18713 * 20 19 16 25 25 C 1.47085 * 111.00515 * 169.99895 * 14 13 2 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 30 30 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 31 31 H 0.97001 * 119.99531 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 33 33 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 34 34 H 1.09005 * 109.48661 * 297.27772 * 15 14 13 35 35 H 1.08998 * 109.48988 * 57.34790 * 15 14 13 36 36 H 1.09007 * 109.46991 * 300.25656 * 18 16 15 37 37 H 1.09001 * 109.47197 * 60.24937 * 18 16 15 38 38 H 1.08999 * 109.47508 * 180.25629 * 18 16 15 39 39 H 1.09005 * 110.50249 * 214.62279 * 21 20 19 40 40 H 1.08998 * 110.49640 * 337.30172 * 21 20 19 41 41 H 1.08993 * 110.75174 * 279.35352 * 22 21 20 42 42 H 1.09005 * 110.90259 * 156.07526 * 22 21 20 43 43 H 1.09004 * 110.48131 * 203.53450 * 23 22 21 44 44 H 1.09000 * 110.59988 * 80.95557 * 23 22 21 45 45 H 1.09004 * 110.05511 * 359.90088 * 24 20 19 46 46 H 1.08996 * 110.05802 * 121.34488 * 24 20 19 47 47 H 1.08994 * 109.50903 * 301.65771 * 25 14 13 48 48 H 1.09002 * 109.50265 * 61.78391 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 1.6458 0.2777 -4.7993 9 14 2.9637 -1.9885 -3.9027 10 1 2.0244 -3.1327 -4.0199 11 1 3.8127 -1.9183 -5.1191 12 1 3.8253 -2.1757 -2.7078 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.3414 1.3347 2.4941 16 6 1.8597 2.1200 3.7169 17 1 0.7933 2.3243 3.6214 18 6 2.6275 3.4399 3.8115 19 8 2.0941 1.3450 4.8968 20 6 1.4556 0.0698 4.8828 21 6 1.7914 -0.6973 6.1748 22 6 0.5873 -0.4124 7.1076 23 6 -0.6144 -0.4257 6.1301 24 6 -0.0699 0.2457 4.8514 25 6 1.9126 -0.7367 3.6687 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.1264 -0.7995 -1.2055 30 1 1.6055 -1.7198 -1.2951 31 1 1.8938 -0.0449 -5.6799 32 1 1.6053 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2056 34 1 3.4168 1.1720 2.5668 35 1 2.1190 1.8990 1.5886 36 1 3.6939 3.2341 3.9047 37 1 2.4486 4.0296 2.9125 38 1 2.2873 3.9964 4.6848 39 1 1.8743 -1.7655 5.9740 40 1 2.7135 -0.3180 6.6152 41 1 0.6886 0.5638 7.5818 42 1 0.4830 -1.1958 7.8584 43 1 -1.4451 0.1496 6.5389 44 1 -0.9269 -1.4487 5.9203 45 1 -0.3240 1.3057 4.8487 46 1 -0.4841 -0.2400 3.9680 47 1 1.3631 -1.6771 3.6286 48 1 2.9802 -0.9414 3.7486 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602703609.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:13 Heat of formation + Delta-G solvation = -66.455872 kcal Electronic energy + Delta-G solvation = -23658.562435 eV Core-core repulsion = 20519.272488 eV Total energy + Delta-G solvation = -3139.289947 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.49287 -37.31713 -36.15006 -34.08943 -32.20624 -32.01026 -28.95987 -28.87608 -27.46089 -26.58277 -25.32189 -23.30012 -21.96759 -21.46241 -20.69618 -18.95133 -18.85608 -16.84813 -16.71314 -16.05110 -15.53280 -15.42200 -14.78170 -14.42330 -14.01533 -13.78830 -13.66036 -13.44211 -13.21988 -12.84853 -12.50126 -12.39078 -12.29606 -11.76498 -11.73170 -11.58771 -11.44164 -11.29456 -11.25297 -11.05402 -10.96646 -10.90061 -10.74088 -10.64331 -10.46091 -10.31748 -9.75482 -9.69972 -9.57415 -9.27242 -9.02306 -8.51441 -8.13115 -6.01919 -3.98738 3.31165 3.38645 3.42102 3.61933 3.93530 4.45436 4.46831 4.51563 4.70138 4.90196 4.99702 5.10005 5.18960 5.25648 5.31586 5.33272 5.40503 5.48941 5.53395 5.54826 5.62923 5.65601 5.68031 5.75295 5.77247 5.84646 5.87691 5.95353 6.01104 6.03015 6.09174 6.12989 6.18477 6.25068 6.29948 6.40670 6.58545 6.82828 7.00752 7.11595 7.20305 7.23723 7.33336 7.34041 7.49062 7.82993 8.57625 9.03793 9.61114 11.11531 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026254 B = 0.003882 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.244618 B = 7210.886718 C = 7562.511226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.072 4.072 3 H 0.061 0.939 4 C -0.009 4.009 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.058 3.942 14 N -0.529 5.529 15 C 0.022 3.978 16 C 0.088 3.912 17 H 0.068 0.932 18 C -0.143 4.143 19 O -0.374 6.374 20 C 0.121 3.879 21 C -0.111 4.111 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.139 4.139 25 C 0.032 3.968 26 H 0.038 0.962 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.011 0.989 30 H 0.011 0.989 31 H 0.262 0.738 32 H 0.069 0.931 33 H 0.028 0.972 34 H 0.038 0.962 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.805 -0.103 23.246 23.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.090 4.090 3 H 0.080 0.920 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.069 4.069 14 N -0.253 5.253 15 C -0.106 4.106 16 C 0.031 3.969 17 H 0.086 0.914 18 C -0.201 4.201 19 O -0.293 6.293 20 C 0.081 3.919 21 C -0.149 4.149 22 C -0.159 4.159 23 C -0.162 4.162 24 C -0.177 4.177 25 C -0.096 4.096 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.030 0.970 30 H 0.029 0.971 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.100 0.900 47 H 0.100 0.900 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -1.183 0.046 23.161 23.191 hybrid contribution 1.313 -1.149 -0.599 1.845 sum 0.130 -1.103 22.562 22.589 Atomic orbital electron populations 1.21586 0.95268 1.00568 1.00657 1.21027 0.96323 0.99129 0.92568 0.92022 1.19618 0.95673 0.95894 0.93530 1.21121 1.35227 1.09555 0.89061 0.90836 1.25027 0.95664 0.96913 0.95964 1.69920 1.47220 1.39315 0.97997 0.86810 0.80651 0.84413 0.77575 1.20357 1.21489 1.19185 1.22369 0.97605 0.97241 0.89698 1.62258 1.57576 1.03657 1.01821 1.22851 0.96416 0.91822 0.99550 1.22163 0.99589 0.90940 0.84249 0.91438 1.21739 1.00712 0.95111 1.02542 1.87933 1.73511 1.28241 1.39663 1.21889 0.92094 0.83761 0.94134 1.22317 0.99254 0.99367 0.93954 1.22483 0.94530 1.01631 0.97278 1.22365 0.97612 1.00692 0.95493 1.22657 0.94750 1.01648 0.98611 1.22752 0.99296 0.97231 0.90338 0.94276 0.93756 0.92243 0.97024 0.97091 0.92839 0.91220 0.95338 0.94420 0.88897 0.92054 0.90772 0.91887 0.90380 0.90612 0.91340 0.91629 0.91811 0.91658 0.91219 0.89995 0.89951 0.94593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.89 37.16 0.33 -2.01 16 2 C -0.07 -1.41 2.27 -90.62 -0.21 -1.61 16 3 H 0.06 1.25 6.30 -51.93 -0.33 0.92 16 4 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 5 C -0.51 -14.44 8.96 -34.44 -0.31 -14.74 16 6 H 0.07 2.23 7.30 -52.49 -0.38 1.84 16 7 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 8 N -0.91 -27.98 13.96 55.43 0.77 -27.21 16 9 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 13 C 0.06 0.96 4.35 -3.83 -0.02 0.94 16 14 N -0.53 -7.65 3.82 -234.47 -0.90 -8.55 16 15 C 0.02 0.31 4.72 -3.71 -0.02 0.29 16 16 C 0.09 1.10 3.10 -26.69 -0.08 1.01 16 17 H 0.07 0.85 6.65 -51.93 -0.35 0.51 16 18 C -0.14 -1.50 9.57 37.15 0.36 -1.14 16 19 O -0.37 -4.88 9.85 -35.23 -0.35 -5.23 16 20 C 0.12 1.41 0.97 -89.94 -0.09 1.32 16 21 C -0.11 -1.07 6.09 -25.20 -0.15 -1.23 16 22 C -0.12 -1.04 6.91 -24.69 -0.17 -1.21 16 23 C -0.12 -1.12 6.84 -25.01 -0.17 -1.29 16 24 C -0.14 -1.54 5.48 -25.72 -0.14 -1.68 16 25 C 0.03 0.41 3.95 -3.85 -0.02 0.40 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.76 7.75 -51.93 -0.40 0.35 16 28 H 0.06 1.26 6.95 -51.93 -0.36 0.89 16 29 H 0.01 0.28 7.20 -51.93 -0.37 -0.10 16 30 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 33 H 0.03 0.48 8.12 -51.92 -0.42 0.06 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 1.38 6.28 -51.93 -0.33 1.05 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.67 7.84 -51.93 -0.41 0.26 16 40 H 0.08 0.75 8.06 -51.93 -0.42 0.33 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.81 6.66 -51.93 -0.35 0.46 16 46 H 0.08 0.99 7.53 -51.93 -0.39 0.60 16 47 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 48 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 356.99 15.07 5.38 5.38 Total: -1.00 -30.08 356.99 -9.77 -39.84 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -9.13 Total: -1.98 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -0.88 Total: -19.47 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.12 Total: -35.75 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.35 Total: -5.23 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.08 -9.77 -39.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602703609.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.615 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds