Wall clock time and date at job start Tue Mar 31 2020 05:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99583 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00273 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47042 * 89.99722 * 9 7 5 11 11 H 1.48506 * 109.47062 * 209.99913 * 9 7 5 12 12 H 1.48495 * 109.46994 * 329.99733 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.47022 * 111.00141 * 293.57550 * 14 13 2 16 16 C 1.53094 * 109.34830 * 177.31455 * 15 14 13 17 17 H 1.09004 * 109.51220 * 297.26554 * 16 15 14 18 18 C 1.52994 * 109.51703 * 177.10907 * 16 15 14 19 19 O 1.43104 * 109.22046 * 57.18489 * 16 15 14 20 20 C 1.42616 * 113.75202 * 302.01800 * 19 16 15 21 21 C 1.53964 * 109.85177 * 178.75554 * 20 19 16 22 22 C 1.54958 * 104.12909 * 95.96003 * 21 20 19 23 23 C 1.54919 * 102.78612 * 37.68069 * 22 21 20 24 24 C 1.53590 * 110.02963 * 296.18713 * 20 19 16 25 25 C 1.47085 * 111.00515 * 169.99895 * 14 13 2 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 30 30 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 31 31 H 0.97001 * 119.99531 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 33 33 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 34 34 H 1.09005 * 109.48661 * 297.27772 * 15 14 13 35 35 H 1.08998 * 109.48988 * 57.34790 * 15 14 13 36 36 H 1.09007 * 109.46991 * 300.25656 * 18 16 15 37 37 H 1.09001 * 109.47197 * 60.24937 * 18 16 15 38 38 H 1.08999 * 109.47508 * 180.25629 * 18 16 15 39 39 H 1.09005 * 110.50249 * 214.62279 * 21 20 19 40 40 H 1.08998 * 110.49640 * 337.30172 * 21 20 19 41 41 H 1.08993 * 110.75174 * 279.35352 * 22 21 20 42 42 H 1.09005 * 110.90259 * 156.07526 * 22 21 20 43 43 H 1.09004 * 110.48131 * 203.53450 * 23 22 21 44 44 H 1.09000 * 110.59988 * 80.95557 * 23 22 21 45 45 H 1.09004 * 110.05511 * 359.90088 * 24 20 19 46 46 H 1.08996 * 110.05802 * 121.34488 * 24 20 19 47 47 H 1.08994 * 109.50903 * 301.65771 * 25 14 13 48 48 H 1.09002 * 109.50265 * 61.78391 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 1.6458 0.2777 -4.7993 9 14 2.9637 -1.9885 -3.9027 10 1 2.0244 -3.1327 -4.0199 11 1 3.8127 -1.9183 -5.1191 12 1 3.8253 -2.1757 -2.7078 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.3414 1.3347 2.4941 16 6 1.8597 2.1200 3.7169 17 1 0.7933 2.3243 3.6214 18 6 2.6275 3.4399 3.8115 19 8 2.0941 1.3450 4.8968 20 6 1.4556 0.0698 4.8828 21 6 1.7914 -0.6973 6.1748 22 6 0.5873 -0.4124 7.1076 23 6 -0.6144 -0.4257 6.1301 24 6 -0.0699 0.2457 4.8514 25 6 1.9126 -0.7367 3.6687 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.1264 -0.7995 -1.2055 30 1 1.6055 -1.7198 -1.2951 31 1 1.8938 -0.0449 -5.6799 32 1 1.6053 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2056 34 1 3.4168 1.1720 2.5668 35 1 2.1190 1.8990 1.5886 36 1 3.6939 3.2341 3.9047 37 1 2.4486 4.0296 2.9125 38 1 2.2873 3.9964 4.6848 39 1 1.8743 -1.7655 5.9740 40 1 2.7135 -0.3180 6.6152 41 1 0.6886 0.5638 7.5818 42 1 0.4830 -1.1958 7.8584 43 1 -1.4451 0.1496 6.5389 44 1 -0.9269 -1.4487 5.9203 45 1 -0.3240 1.3057 4.8487 46 1 -0.4841 -0.2400 3.9680 47 1 1.3631 -1.6771 3.6286 48 1 2.9802 -0.9414 3.7486 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602703609.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:12 Heat of formation + Delta-G solvation = -83.644024 kcal Electronic energy + Delta-G solvation = -23659.307769 eV Core-core repulsion = 20519.272488 eV Total energy + Delta-G solvation = -3140.035281 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.47318 -38.52988 -37.17859 -35.68337 -34.02458 -33.11633 -30.16323 -29.69786 -29.12133 -27.78684 -26.49183 -24.85073 -23.12037 -22.67554 -21.52237 -20.53127 -19.81897 -18.92010 -17.69615 -17.19280 -16.61648 -16.43859 -16.24440 -15.76838 -15.39719 -15.03276 -14.84944 -14.77307 -14.40873 -14.11703 -13.94476 -13.46949 -13.43127 -13.28145 -12.99426 -12.81710 -12.75203 -12.51835 -12.35002 -12.19170 -12.12315 -11.99124 -11.92661 -11.75239 -11.71447 -11.45141 -11.39764 -11.36632 -11.13664 -10.98977 -10.74192 -10.36623 -9.31013 -8.26718 -6.28967 1.34873 1.36487 1.47998 2.36765 2.68310 2.82347 3.08502 3.62956 3.70589 3.81316 3.90459 4.00196 4.11267 4.20431 4.25904 4.33511 4.38923 4.45537 4.51401 4.57297 4.63572 4.67003 4.72632 4.74917 4.82343 4.85589 4.87775 4.89758 4.95585 5.01845 5.07060 5.10466 5.13331 5.21188 5.24298 5.26849 5.38043 5.39437 5.41482 5.50141 5.52891 5.66990 5.71738 6.00221 6.06628 6.34198 6.38120 6.78446 7.34543 8.90059 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026254 B = 0.003882 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.244618 B = 7210.886718 C = 7562.511226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.067 4.067 3 H 0.049 0.951 4 C -0.006 4.006 5 C -0.517 4.517 6 H 0.035 0.965 7 C 0.002 3.998 8 N -0.953 5.953 9 Si 0.947 3.053 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.249 1.249 13 C 0.070 3.930 14 N -0.531 5.531 15 C 0.023 3.977 16 C 0.091 3.909 17 H 0.065 0.935 18 C -0.140 4.140 19 O -0.383 6.383 20 C 0.116 3.884 21 C -0.109 4.109 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.137 4.137 25 C 0.033 3.967 26 H 0.045 0.955 27 H 0.062 0.938 28 H 0.027 0.973 29 H 0.012 0.988 30 H 0.018 0.982 31 H 0.264 0.736 32 H 0.080 0.920 33 H 0.025 0.975 34 H 0.031 0.969 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.059 0.941 46 H 0.070 0.930 47 H 0.094 0.906 48 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.391 -1.884 25.558 25.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 H 0.067 0.933 4 C -0.044 4.044 5 C -0.555 4.555 6 H 0.053 0.947 7 C -0.194 4.194 8 N -0.595 5.595 9 Si 0.771 3.229 10 H -0.192 1.192 11 H -0.212 1.212 12 H -0.173 1.173 13 C -0.058 4.058 14 N -0.255 5.255 15 C -0.105 4.105 16 C 0.034 3.966 17 H 0.082 0.918 18 C -0.198 4.198 19 O -0.303 6.303 20 C 0.076 3.924 21 C -0.147 4.147 22 C -0.154 4.154 23 C -0.158 4.158 24 C -0.175 4.175 25 C -0.095 4.095 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.046 0.954 29 H 0.031 0.969 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.078 0.922 46 H 0.089 0.911 47 H 0.112 0.888 48 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.773 -1.733 25.504 25.574 hybrid contribution 1.131 -0.499 -1.318 1.807 sum 0.358 -2.232 24.186 24.291 Atomic orbital electron populations 1.21462 0.94819 1.00766 0.99950 1.20886 0.96598 0.98418 0.92652 0.93258 1.19559 0.95673 0.95826 0.93307 1.21425 1.34276 1.08664 0.91164 0.94704 1.25984 0.96988 1.00897 0.95531 1.70076 1.49077 1.41612 0.98705 0.85704 0.79368 0.79684 0.78156 1.19170 1.21189 1.17289 1.22125 0.97268 0.97345 0.89065 1.62214 1.57552 1.03796 1.01922 1.22846 0.96011 0.91803 0.99884 1.22159 0.99603 0.91402 0.83460 0.91755 1.21735 1.00337 0.94287 1.03393 1.87935 1.73827 1.28891 1.39666 1.22083 0.92377 0.83287 0.94645 1.22355 0.99573 0.99786 0.92993 1.22467 0.93589 1.02075 0.97291 1.22360 0.97947 1.01042 0.94440 1.22610 0.94401 1.01157 0.99334 1.22839 0.99297 0.97669 0.89701 0.93539 0.91889 0.95412 0.96941 0.96382 0.92677 0.90131 0.95634 0.95105 0.90183 0.92192 0.90085 0.90860 0.89025 0.90957 0.91841 0.89731 0.91155 0.90764 0.92185 0.91137 0.88762 0.94975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.26 8.89 71.98 0.64 -3.62 16 2 C -0.07 -2.60 2.27 -10.79 -0.02 -2.62 16 3 H 0.05 2.03 6.30 -2.39 -0.02 2.02 16 4 C -0.01 -0.27 3.52 29.85 0.10 -0.17 16 5 C -0.52 -29.87 8.96 25.60 0.23 -29.64 16 6 H 0.03 2.22 7.30 -2.91 -0.02 2.20 16 7 C 0.00 0.13 5.47 84.65 0.46 0.59 16 8 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 9 Si 0.95 44.77 27.47 68.60 1.88 46.66 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 12 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 13 C 0.07 2.19 4.35 86.30 0.37 2.57 16 14 N -0.53 -14.67 3.82 -895.72 -3.42 -18.10 16 15 C 0.02 0.63 4.72 86.31 0.41 1.04 16 16 C 0.09 2.20 3.10 30.62 0.09 2.29 16 17 H 0.06 1.59 6.65 -2.38 -0.02 1.57 16 18 C -0.14 -2.79 9.57 71.98 0.69 -2.10 16 19 O -0.38 -9.49 9.85 -148.98 -1.47 -10.96 16 20 C 0.12 2.47 0.97 -10.35 -0.01 2.46 16 21 C -0.11 -1.83 6.09 31.59 0.19 -1.64 16 22 C -0.12 -1.67 6.91 31.92 0.22 -1.45 16 23 C -0.12 -1.86 6.84 31.71 0.22 -1.64 16 24 C -0.14 -2.80 5.48 31.25 0.17 -2.63 16 25 C 0.03 0.77 3.95 86.19 0.34 1.11 16 26 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.06 2.11 7.75 -2.39 -0.02 2.10 16 28 H 0.03 1.19 6.95 -2.39 -0.02 1.17 16 29 H 0.01 0.58 7.20 -2.39 -0.02 0.56 16 30 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 31 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 32 H 0.08 2.38 8.05 -2.39 -0.02 2.36 16 33 H 0.03 0.82 8.12 -2.38 -0.02 0.80 16 34 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.08 2.40 6.28 -2.39 -0.01 2.38 16 36 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.09 1.29 7.84 -2.38 -0.02 1.27 16 40 H 0.07 1.28 8.06 -2.39 -0.02 1.26 16 41 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 43 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 44 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.06 1.33 6.66 -2.38 -0.02 1.31 16 46 H 0.07 1.59 7.53 -2.39 -0.02 1.57 16 47 H 0.09 1.98 8.10 -2.39 -0.02 1.97 16 48 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -65.24 356.99 2.24 -63.00 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.83 Total: 14.99 kcal Atomic # 6 Polarization: -39.55 SS G_CDS: 4.11 Total: -35.44 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -3.12 Total: -78.25 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -1.47 Total: -10.96 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.66 kcal Total: -65.24 2.24 -63.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602703609.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.646 kcal (2) G-P(sol) polarization free energy of solvation -65.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds