Wall clock time and date at job start Tue Mar 31 2020 06:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47119 * 2 1 4 4 C 1.52994 * 109.47197 * 119.99396 * 2 1 3 5 5 C 1.50707 * 109.47335 * 295.00457 * 4 2 1 6 6 H 1.08000 * 119.99700 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99979 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00009 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00235 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47379 * 89.99890 * 9 7 5 11 11 H 1.48500 * 109.47365 * 210.00164 * 9 7 5 12 12 H 1.48502 * 109.47294 * 329.99962 * 9 7 5 13 13 C 1.52994 * 109.47465 * 240.00088 * 2 1 3 14 14 N 1.46895 * 109.47570 * 62.09120 * 13 2 1 15 15 C 1.46846 * 110.99939 * 52.06631 * 14 13 2 16 16 C 1.53036 * 109.52648 * 185.84323 * 15 14 13 17 17 C 1.53127 * 109.27555 * 300.81836 * 16 15 14 18 18 C 1.53122 * 109.15812 * 57.65419 * 17 16 15 19 19 H 1.08994 * 109.53567 * 62.30518 * 18 17 16 20 20 O 1.42899 * 109.49944 * 182.40668 * 18 17 16 21 21 C 1.42906 * 113.99860 * 269.80038 * 20 18 17 22 22 C 1.53781 * 113.61145 * 149.99858 * 21 20 18 23 23 C 1.53790 * 87.07727 * 89.11980 * 22 21 20 24 24 C 1.53781 * 87.17315 * 25.38773 * 23 22 21 25 25 C 1.46845 * 111.00381 * 176.27478 * 14 13 2 26 26 H 1.08994 * 109.46953 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47472 * 300.00792 * 1 2 3 28 28 H 1.09005 * 109.46990 * 60.00053 * 1 2 3 29 29 H 1.09000 * 109.46898 * 54.99979 * 4 2 1 30 30 H 1.08998 * 109.48005 * 175.00123 * 4 2 1 31 31 H 0.96993 * 119.99917 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.46994 * 302.09049 * 13 2 1 33 33 H 1.08998 * 109.47286 * 182.09472 * 13 2 1 34 34 H 1.09006 * 109.46076 * 305.85583 * 15 14 13 35 35 H 1.09000 * 109.46516 * 65.83257 * 15 14 13 36 36 H 1.09001 * 109.50555 * 60.75803 * 16 15 14 37 37 H 1.09002 * 109.50322 * 180.88240 * 16 15 14 38 38 H 1.09003 * 109.52087 * 297.75251 * 17 16 15 39 39 H 1.08998 * 109.52097 * 177.56023 * 17 16 15 40 40 H 1.08999 * 112.90660 * 18.75619 * 21 20 18 41 41 H 1.08997 * 113.61943 * 334.57657 * 22 21 20 42 42 H 1.08999 * 113.61619 * 203.66074 * 22 21 20 43 43 H 1.08999 * 113.61563 * 139.98168 * 23 22 21 44 44 H 1.08999 * 113.61270 * 270.79756 * 23 22 21 45 45 H 1.08997 * 113.61251 * 89.16140 * 24 23 22 46 46 H 1.08997 * 113.60937 * 220.06075 * 24 23 22 47 47 H 1.08998 * 109.46194 * 54.14464 * 25 14 13 48 48 H 1.09004 * 109.45376 * 294.17443 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6412 0.0573 2.4766 6 1 1.0798 0.9743 2.3756 7 6 1.9922 -0.4019 3.7283 8 7 1.6447 0.2776 4.7994 9 14 2.9627 -1.9884 3.9030 10 1 4.4161 -1.6849 3.8794 11 1 2.6145 -2.6426 5.1898 12 1 2.6290 -2.8992 2.7786 13 6 2.0400 -0.7212 -1.2492 14 7 1.5922 -0.0002 -2.4481 15 6 1.9437 1.4233 -2.3682 16 6 1.3371 2.1677 -3.5598 17 6 1.8735 1.5626 -4.8601 18 6 1.5363 0.0694 -4.8961 19 1 0.4541 -0.0601 -4.8921 20 8 2.0824 -0.5145 -6.0805 21 6 1.1968 -0.4908 -7.2018 22 6 1.9200 -0.4080 -8.5563 23 6 1.9503 -1.9456 -8.5452 24 6 0.7135 -1.8874 -7.6331 25 6 2.1372 -0.6141 -3.6657 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6053 -1.7196 1.2952 30 1 3.1263 -0.7994 1.2058 31 1 1.8920 -0.0453 5.6800 32 1 1.6464 -1.7375 -1.2681 33 1 3.1294 -0.7538 -1.2306 34 1 1.5528 1.8424 -1.4409 35 1 3.0282 1.5312 -2.3866 36 1 0.2516 2.0718 -3.5344 37 1 1.6113 3.2214 -3.5085 38 1 2.9549 1.6930 -4.9036 39 1 1.4110 2.0612 -5.7118 40 1 0.3920 0.2359 -7.0914 41 1 2.9080 0.0485 -8.4967 42 1 1.3065 0.0107 -9.3540 43 1 1.7538 -2.3933 -9.5194 44 1 2.8326 -2.3614 -8.0585 45 1 -0.2304 -1.8738 -8.1779 46 1 0.7289 -2.6234 -6.8293 47 1 1.8868 -1.6748 -3.6810 48 1 3.2208 -0.4965 -3.6778 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602704215.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:02 Heat of formation + Delta-G solvation = -38.908093 kcal Electronic energy + Delta-G solvation = -22802.700618 eV Core-core repulsion = 19664.605232 eV Total energy + Delta-G solvation = -3138.095386 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.97305 -38.78364 -36.37988 -34.78770 -32.72821 -31.64953 -29.78726 -27.47579 -26.19751 -25.90806 -25.20590 -23.53932 -22.95938 -21.71446 -19.97154 -19.73248 -18.73918 -17.13853 -16.67389 -16.02085 -15.72636 -14.95324 -14.78626 -14.70134 -14.48981 -14.18902 -13.66887 -13.54852 -13.18009 -12.90693 -12.77567 -12.68444 -12.51031 -12.20985 -11.72948 -11.62729 -11.34746 -11.26129 -11.05840 -10.95214 -10.89551 -10.75320 -10.61408 -10.49881 -10.43278 -10.26374 -9.88213 -9.58340 -9.53234 -9.37863 -9.01938 -8.50215 -8.09426 -6.00885 -3.97718 3.20806 3.32466 3.40127 3.44058 4.19393 4.34944 4.41948 4.48157 4.59283 4.69803 4.75539 4.80365 4.95191 5.09700 5.20336 5.30583 5.33189 5.35633 5.46795 5.51842 5.57014 5.60399 5.63628 5.66651 5.74991 5.79962 5.85597 5.88778 5.93891 5.98860 6.01097 6.05854 6.14499 6.26282 6.34142 6.42538 6.57941 6.86174 7.03413 7.08870 7.15949 7.26559 7.32716 7.36696 7.50960 7.84084 8.58427 9.04638 9.62195 11.12539 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031980 B = 0.003099 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.339863 B = 9031.670845 C = 9502.502660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.077 4.077 3 H 0.064 0.936 4 C -0.009 4.009 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.060 3.940 14 N -0.531 5.531 15 C 0.045 3.955 16 C -0.114 4.114 17 C -0.140 4.140 18 C 0.095 3.905 19 H 0.070 0.930 20 O -0.361 6.361 21 C 0.067 3.933 22 C -0.144 4.144 23 C -0.135 4.135 24 C -0.163 4.163 25 C 0.061 3.939 26 H 0.040 0.960 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.016 0.984 30 H 0.008 0.992 31 H 0.262 0.738 32 H 0.071 0.929 33 H 0.028 0.972 34 H 0.092 0.908 35 H 0.031 0.969 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.820 -0.561 -26.083 26.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.096 4.096 3 H 0.082 0.918 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.705 3.295 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.190 1.190 13 C -0.067 4.067 14 N -0.256 5.256 15 C -0.083 4.083 16 C -0.152 4.152 17 C -0.178 4.178 18 C 0.037 3.963 19 H 0.088 0.912 20 O -0.280 6.280 21 C 0.008 3.992 22 C -0.182 4.182 23 C -0.172 4.172 24 C -0.201 4.201 25 C -0.068 4.068 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.026 0.974 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.110 0.890 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.126 -0.685 -25.925 25.958 hybrid contribution 1.248 -0.709 0.303 1.467 sum 0.122 -1.394 -25.621 25.659 Atomic orbital electron populations 1.21602 0.95155 1.00822 1.00617 1.21137 0.96467 0.99195 0.92816 0.91759 1.19616 0.95391 0.96283 0.93436 1.21119 1.35283 1.09490 0.89070 0.90842 1.25026 0.95716 0.96890 0.95967 1.69914 1.47265 1.39295 0.98004 0.86810 0.80588 0.84572 0.77487 1.20455 1.21492 1.19036 1.22323 0.97184 0.97985 0.89165 1.61872 1.59730 1.02403 1.01614 1.22263 0.97973 0.88562 0.99495 1.21551 1.01304 0.98850 0.93461 1.22104 1.01779 0.95687 0.98202 1.22128 0.97853 0.91959 0.84322 0.91192 1.87852 1.40620 1.80659 1.18825 1.23079 0.92529 0.96778 0.86816 1.23169 1.01739 0.97250 0.95996 1.22769 0.98749 0.96079 0.99596 1.23464 0.98200 0.98304 1.00102 1.21959 0.97199 0.98816 0.88804 0.94066 0.92219 0.93737 0.96559 0.97392 0.92845 0.91044 0.95352 0.88969 0.95057 0.91055 0.91274 0.91558 0.92049 0.91109 0.90686 0.89295 0.91743 0.89849 0.89579 0.90728 0.90466 0.94438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.80 37.16 0.33 -2.03 16 2 C -0.08 -1.51 1.85 -90.63 -0.17 -1.68 16 3 H 0.06 1.28 6.06 -51.93 -0.31 0.96 16 4 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 5 C -0.51 -14.41 8.96 -34.44 -0.31 -14.72 16 6 H 0.07 2.22 7.30 -52.49 -0.38 1.83 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -27.99 13.96 55.43 0.77 -27.22 16 9 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 13 C 0.06 1.00 4.54 -3.83 -0.02 0.98 16 14 N -0.53 -7.65 4.09 -234.68 -0.96 -8.61 16 15 C 0.04 0.61 4.99 -3.83 -0.02 0.59 16 16 C -0.11 -1.26 6.09 -26.65 -0.16 -1.42 16 17 C -0.14 -1.49 5.62 -26.60 -0.15 -1.64 16 18 C 0.10 1.09 2.65 -26.65 -0.07 1.02 16 19 H 0.07 0.80 7.72 -51.93 -0.40 0.40 16 20 O -0.36 -4.18 9.92 -35.23 -0.35 -4.53 16 21 C 0.07 0.61 4.20 -25.83 -0.11 0.50 16 22 C -0.14 -1.12 7.92 -25.91 -0.21 -1.32 16 23 C -0.13 -1.06 8.01 -25.91 -0.21 -1.27 16 24 C -0.16 -1.34 7.92 -25.83 -0.20 -1.55 16 25 C 0.06 0.79 5.11 -3.84 -0.02 0.77 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 28 H 0.04 0.75 7.59 -51.93 -0.39 0.35 16 29 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 30 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 1.37 5.72 -51.93 -0.30 1.07 16 35 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.59 7.77 -51.93 -0.40 0.19 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 48 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 364.29 15.07 5.49 5.49 Total: -1.00 -29.89 364.29 -10.48 -40.37 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -9.25 Total: -2.45 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -1.51 Total: -20.29 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: -0.19 Total: -35.83 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.35 Total: -4.53 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.89 -10.48 -40.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602704215.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.459 kcal (2) G-P(sol) polarization free energy of solvation -29.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds