Wall clock time and date at job start Tue Mar 31 2020 06:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47265 * 2 1 4 4 C 1.52999 * 109.47068 * 240.00075 * 2 1 3 5 5 C 1.50697 * 109.47417 * 65.00226 * 4 2 1 6 6 H 1.08003 * 119.99891 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99749 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99764 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00280 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47134 * 90.00288 * 9 7 5 11 11 H 1.48500 * 109.47018 * 210.00177 * 9 7 5 12 12 H 1.48499 * 109.47297 * 330.00053 * 9 7 5 13 13 C 1.53001 * 109.46595 * 119.99837 * 2 1 3 14 14 N 1.46904 * 109.47447 * 294.99776 * 13 2 1 15 15 C 1.46843 * 110.99858 * 293.95887 * 14 13 2 16 16 C 1.53039 * 109.52094 * 174.16059 * 15 14 13 17 17 C 1.53116 * 109.28221 * 59.17423 * 16 15 14 18 18 C 1.53120 * 109.16369 * 302.35156 * 17 16 15 19 19 H 1.09008 * 109.49946 * 297.67090 * 18 17 16 20 20 O 1.42891 * 109.50665 * 177.59086 * 18 17 16 21 21 C 1.42905 * 113.99873 * 89.99621 * 20 18 17 22 22 C 1.53786 * 113.61467 * 110.86351 * 21 20 18 23 23 C 1.53962 * 87.01719 * 89.22967 * 22 21 20 24 24 C 1.53781 * 113.61505 * 208.47211 * 21 20 18 25 25 C 1.46840 * 110.99922 * 169.74527 * 14 13 2 26 26 H 1.09009 * 109.46862 * 59.99963 * 1 2 3 27 27 H 1.08995 * 109.47056 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47405 * 300.00211 * 1 2 3 29 29 H 1.09003 * 109.46759 * 185.00585 * 4 2 1 30 30 H 1.09000 * 109.47094 * 304.99846 * 4 2 1 31 31 H 0.96996 * 119.99463 * 179.97438 * 8 7 5 32 32 H 1.09007 * 109.46762 * 174.99870 * 13 2 1 33 33 H 1.09001 * 109.47508 * 55.00403 * 13 2 1 34 34 H 1.08997 * 109.46592 * 54.14673 * 15 14 13 35 35 H 1.09007 * 109.45528 * 294.16713 * 15 14 13 36 36 H 1.09004 * 109.50104 * 299.23750 * 16 15 14 37 37 H 1.09000 * 109.53729 * 179.14237 * 16 15 14 38 38 H 1.09001 * 109.52460 * 182.43950 * 17 16 15 39 39 H 1.08999 * 109.57257 * 62.28169 * 17 16 15 40 40 H 1.09002 * 112.84917 * 339.66862 * 21 20 18 41 41 H 1.08993 * 113.61491 * 203.75088 * 22 21 20 42 42 H 1.09000 * 113.61138 * 334.65426 * 22 21 20 43 43 H 1.08997 * 113.53543 * 270.80998 * 23 22 21 44 44 H 1.08994 * 113.66446 * 139.93200 * 23 22 21 45 45 H 1.09001 * 113.61695 * 25.34840 * 24 21 20 46 46 H 1.08996 * 113.61580 * 156.17118 * 24 21 20 47 47 H 1.08997 * 109.46327 * 65.82684 * 25 14 13 48 48 H 1.09001 * 109.46717 * 305.85702 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0801 0.9742 -2.3757 7 6 1.9934 -0.4018 -3.7282 8 7 1.6451 0.2772 -4.7994 9 14 2.9649 -1.9877 -3.9026 10 1 2.0265 -3.1327 -4.0194 11 1 3.8136 -1.9170 -5.1191 12 1 3.8270 -2.1740 -2.7078 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0375 2.4457 15 6 2.3338 1.3369 2.4894 16 6 1.7980 2.1566 3.6655 17 6 2.0383 1.3887 4.9682 18 6 1.3580 0.0199 4.8776 19 1 0.2821 0.1550 4.7664 20 8 1.6248 -0.7251 6.0674 21 6 0.6598 -0.5311 7.1033 22 6 -0.2106 -1.7696 7.3744 23 6 0.8647 -2.2042 8.3870 24 6 1.2304 -0.7163 8.5193 25 6 1.9066 -0.7378 3.6664 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.1264 -0.7995 -1.2055 30 1 1.6054 -1.7198 -1.2951 31 1 1.8930 -0.0454 -5.6799 32 1 3.1263 -0.7995 1.2057 33 1 1.6053 -1.7198 1.2952 34 1 2.1512 1.8746 1.5590 35 1 3.4053 1.1803 2.6142 36 1 0.7291 2.3253 3.5345 37 1 2.3152 3.1152 3.7074 38 1 1.6195 1.9491 5.8040 39 1 3.1092 1.2538 5.1203 40 1 0.0859 0.3875 6.9806 41 1 -1.1720 -1.5361 7.8317 42 1 -0.2994 -2.4369 6.5171 43 1 1.6564 -2.8110 7.9477 44 1 0.4563 -2.6363 9.3005 45 1 2.3031 -0.5346 8.5851 46 1 0.6644 -0.1932 9.2900 47 1 2.9800 -0.8846 3.7856 48 1 1.4138 -1.7071 3.5908 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602704216.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:04 Heat of formation + Delta-G solvation = -41.081545 kcal Electronic energy + Delta-G solvation = -22781.575505 eV Core-core repulsion = 19643.385871 eV Total energy + Delta-G solvation = -3138.189634 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.96643 -38.73678 -36.33104 -34.83211 -32.72900 -31.63014 -29.81425 -27.51397 -26.11662 -25.90482 -25.21468 -23.53087 -22.95804 -21.71083 -19.93859 -19.69904 -18.84746 -17.12943 -16.66819 -16.00759 -15.71876 -14.97660 -14.77324 -14.72755 -14.40149 -14.21499 -13.69337 -13.48554 -13.18618 -12.89583 -12.82425 -12.68396 -12.53071 -12.28143 -11.65942 -11.51682 -11.34791 -11.24154 -11.06061 -10.96498 -10.94062 -10.74445 -10.63852 -10.53876 -10.42162 -10.36695 -9.72099 -9.65375 -9.55387 -9.33781 -9.02960 -8.49606 -8.09540 -6.00153 -3.96855 3.20475 3.32986 3.40383 3.44068 4.18278 4.35193 4.41768 4.48662 4.59014 4.69531 4.75109 4.79534 4.93926 5.09774 5.19461 5.29560 5.33815 5.35861 5.46711 5.50823 5.55465 5.60199 5.63703 5.65730 5.75033 5.80187 5.85875 5.87765 5.93952 5.99596 6.01730 6.06301 6.13357 6.25945 6.31324 6.44943 6.62446 6.86075 7.04912 7.08953 7.17939 7.28436 7.32480 7.38322 7.52352 7.85077 8.59606 9.05714 9.62977 11.13309 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031036 B = 0.003100 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.953766 B = 9030.027683 C = 9417.128541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.072 4.072 3 H 0.063 0.937 4 C -0.010 4.010 5 C -0.511 4.511 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.060 3.940 14 N -0.531 5.531 15 C 0.048 3.952 16 C -0.114 4.114 17 C -0.140 4.140 18 C 0.095 3.905 19 H 0.070 0.930 20 O -0.362 6.362 21 C 0.067 3.933 22 C -0.164 4.164 23 C -0.134 4.134 24 C -0.143 4.143 25 C 0.061 3.939 26 H 0.058 0.942 27 H 0.038 0.962 28 H 0.044 0.956 29 H 0.012 0.988 30 H 0.011 0.989 31 H 0.262 0.738 32 H 0.029 0.971 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.031 0.969 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.037 0.963 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.231 -0.668 26.094 26.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.091 4.091 3 H 0.081 0.919 4 C -0.048 4.048 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.256 5.256 15 C -0.079 4.079 16 C -0.151 4.151 17 C -0.178 4.178 18 C 0.037 3.963 19 H 0.088 0.912 20 O -0.280 6.280 21 C 0.008 3.992 22 C -0.201 4.201 23 C -0.172 4.172 24 C -0.181 4.181 25 C -0.067 4.067 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.030 0.970 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.049 0.951 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.102 0.898 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.107 0.893 47 H 0.055 0.945 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.553 -0.711 25.900 25.956 hybrid contribution 1.215 -0.879 -0.243 1.519 sum -0.338 -1.590 25.657 25.709 Atomic orbital electron populations 1.21591 0.95292 1.00578 1.00666 1.21045 0.96332 0.99177 0.92530 0.91898 1.19625 0.95710 0.95916 0.93527 1.21124 1.35147 1.09565 0.89064 0.90825 1.25029 0.95691 0.96925 0.95971 1.69919 1.47252 1.39350 0.97986 0.86808 0.80659 0.84399 0.77572 1.20371 1.21531 1.19131 1.22336 0.97658 0.97235 0.89435 1.61835 1.58565 1.03742 1.01474 1.22199 0.95478 0.90780 0.99481 1.21541 1.02238 0.97924 0.93444 1.22099 1.01476 0.96057 0.98135 1.22126 0.99434 0.90538 0.84186 0.91164 1.87848 1.48445 1.68085 1.23597 1.23042 0.90649 0.97180 0.88331 1.23475 0.97783 0.98759 1.00124 1.22800 0.99003 0.96312 0.99063 1.23153 1.02143 0.97226 0.95552 1.21960 0.99142 0.96867 0.88762 0.92269 0.94280 0.93705 0.96975 0.97068 0.92860 0.95256 0.91198 0.89421 0.95089 0.90994 0.91283 0.92037 0.91578 0.91157 0.89570 0.90712 0.89845 0.91717 0.90701 0.89279 0.94503 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 8.89 37.16 0.33 -2.03 16 2 C -0.07 -1.41 2.26 -90.62 -0.21 -1.62 16 3 H 0.06 1.27 6.23 -51.93 -0.32 0.94 16 4 C -0.01 -0.24 3.52 -27.88 -0.10 -0.33 16 5 C -0.51 -14.44 8.96 -34.44 -0.31 -14.75 16 6 H 0.07 2.23 7.30 -52.48 -0.38 1.85 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.05 13.96 55.43 0.77 -27.28 16 9 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 13 C 0.06 1.00 4.35 -3.82 -0.02 0.98 16 14 N -0.53 -7.63 4.11 -234.67 -0.96 -8.59 16 15 C 0.05 0.65 5.30 -3.83 -0.02 0.63 16 16 C -0.11 -1.24 6.09 -26.65 -0.16 -1.41 16 17 C -0.14 -1.47 5.62 -26.61 -0.15 -1.62 16 18 C 0.10 1.09 2.65 -26.65 -0.07 1.02 16 19 H 0.07 0.81 7.75 -51.92 -0.40 0.41 16 20 O -0.36 -4.17 9.92 -35.23 -0.35 -4.52 16 21 C 0.07 0.61 4.17 -25.92 -0.11 0.50 16 22 C -0.16 -1.36 7.93 -25.82 -0.20 -1.56 16 23 C -0.13 -1.06 8.02 -25.82 -0.21 -1.27 16 24 C -0.14 -1.11 7.91 -25.92 -0.21 -1.32 16 25 C 0.06 0.79 5.11 -3.84 -0.02 0.77 16 26 H 0.06 1.25 6.95 -51.92 -0.36 0.89 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 29 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 30 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 33 H 0.07 1.14 7.98 -51.93 -0.41 0.72 16 34 H 0.09 1.28 6.13 -51.93 -0.32 0.96 16 35 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.59 7.80 -51.93 -0.40 0.18 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.08 1.01 8.01 -51.93 -0.42 0.60 16 LS Contribution 365.42 15.07 5.51 5.51 Total: -1.00 -29.99 365.42 -10.52 -40.52 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -9.28 Total: -2.68 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -1.54 Total: -20.22 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: -0.19 Total: -35.87 kcal Atomic # 8 Polarization: -4.17 SS G_CDS: -0.35 Total: -4.52 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.99 -10.52 -40.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602704216.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.565 kcal (2) G-P(sol) polarization free energy of solvation -29.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds