Wall clock time and date at job start Tue Mar 31 2020 06:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47466 * 2 1 4 4 C 1.53000 * 109.47066 * 240.00127 * 2 1 3 5 5 C 1.50701 * 109.46944 * 65.00522 * 4 2 1 6 6 H 1.07993 * 120.00335 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99964 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99677 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00084 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46689 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47153 * 119.99894 * 9 7 5 12 12 H 1.48501 * 109.46718 * 239.99970 * 9 7 5 13 13 C 1.53000 * 109.47309 * 120.00199 * 2 1 3 14 14 N 1.46904 * 109.47139 * 296.00823 * 13 2 1 15 15 C 1.46844 * 110.99845 * 164.08009 * 14 13 2 16 16 C 1.53038 * 109.51285 * 185.84565 * 15 14 13 17 17 C 1.53117 * 109.27682 * 300.80439 * 16 15 14 18 18 C 1.53120 * 109.15183 * 57.67404 * 17 16 15 19 19 H 1.09000 * 109.50671 * 62.27702 * 18 17 16 20 20 O 1.42897 * 109.50423 * 182.39683 * 18 17 16 21 21 C 1.42903 * 114.00144 * 269.80160 * 20 18 17 22 22 C 1.53784 * 113.61310 * 247.49830 * 21 20 18 23 23 C 1.53787 * 87.07743 * 220.01837 * 22 21 20 24 24 C 1.53780 * 113.61438 * 149.99849 * 21 20 18 25 25 C 1.46837 * 110.99950 * 288.29140 * 14 13 2 26 26 H 1.08992 * 109.47481 * 184.82866 * 1 2 3 27 27 H 1.09000 * 109.46987 * 304.82830 * 1 2 3 28 28 H 1.09001 * 109.46798 * 64.82520 * 1 2 3 29 29 H 1.09003 * 109.46814 * 185.00009 * 4 2 1 30 30 H 1.08996 * 109.47488 * 305.00026 * 4 2 1 31 31 H 0.96998 * 120.00000 * 179.97438 * 8 7 5 32 32 H 1.08995 * 109.47347 * 176.00682 * 13 2 1 33 33 H 1.09002 * 109.46688 * 56.00612 * 13 2 1 34 34 H 1.08995 * 109.46633 * 305.85642 * 15 14 13 35 35 H 1.09003 * 109.46304 * 65.83722 * 15 14 13 36 36 H 1.08996 * 109.50284 * 60.75613 * 16 15 14 37 37 H 1.09001 * 109.50600 * 180.87685 * 16 15 14 38 38 H 1.08999 * 109.53834 * 297.76678 * 17 16 15 39 39 H 1.09001 * 109.57351 * 177.59930 * 17 16 15 40 40 H 1.08999 * 112.84846 * 18.80183 * 21 20 18 41 41 H 1.09002 * 113.61153 * 334.56455 * 22 21 20 42 42 H 1.08997 * 113.61574 * 105.46920 * 22 21 20 43 43 H 1.09000 * 113.61234 * 270.88083 * 23 22 21 44 44 H 1.08999 * 113.69057 * 139.99142 * 23 22 21 45 45 H 1.08996 * 113.61586 * 254.53182 * 24 21 20 46 46 H 1.08999 * 113.61455 * 25.43168 * 24 21 20 47 47 H 1.09001 * 109.46291 * 294.17964 * 25 14 13 48 48 H 1.09003 * 109.46549 * 54.15682 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6414 0.0572 -2.4766 6 1 1.0801 0.9743 -2.3757 7 6 1.9924 -0.4020 -3.7284 8 7 2.6755 -1.5192 -3.8512 9 14 1.4977 0.5625 -5.2497 10 1 0.7405 1.7735 -4.8434 11 1 2.7155 0.9670 -5.9970 12 1 0.6433 -0.2869 -6.1180 13 6 2.0400 -0.7213 1.2492 14 7 1.6307 0.0246 2.4468 15 6 1.7614 -0.8032 3.6526 16 6 1.1917 -0.0479 4.8554 17 6 1.9533 1.2686 5.0326 18 6 1.8416 2.0906 3.7457 19 1 0.7958 2.3345 3.5591 20 8 2.5963 3.2963 3.8827 21 6 1.8487 4.3931 4.4122 22 6 1.6232 5.5299 3.4014 23 6 1.8774 6.5062 4.5621 24 6 2.7004 5.3862 5.2202 25 6 2.3924 1.2734 2.5748 26 1 -0.3634 -1.0239 0.0865 27 1 -0.3633 0.5869 0.8436 28 1 -0.3633 0.4372 -0.9301 29 1 3.1263 -0.7994 -1.2056 30 1 1.6054 -1.7197 -1.2953 31 1 2.9221 -1.8425 -4.7319 32 1 3.1276 -0.7837 1.2141 33 1 1.6194 -1.7262 1.2856 34 1 1.2121 -1.7345 3.5151 35 1 2.8141 -1.0251 3.8284 36 1 0.1357 0.1623 4.6862 37 1 1.3029 -0.6561 5.7531 38 1 3.0023 1.0577 5.2403 39 1 1.5235 1.8303 5.8620 40 1 0.9407 4.0775 4.9261 41 1 2.3808 5.5751 2.6190 42 1 0.6066 5.5715 3.0105 43 1 0.9766 6.7695 5.1164 44 1 2.4707 7.3763 4.2807 45 1 2.5534 5.3118 6.2977 46 1 3.7524 5.3922 4.9351 47 1 3.4420 1.0417 2.7555 48 1 2.3011 1.8505 1.6546 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602704217.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:06 Heat of formation + Delta-G solvation = -47.571809 kcal Electronic energy + Delta-G solvation = -22901.074328 eV Core-core repulsion = 19762.603256 eV Total energy + Delta-G solvation = -3138.471073 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.79928 -38.62056 -36.24229 -34.90750 -32.74199 -31.35364 -29.87333 -26.92293 -25.99433 -25.80191 -24.93946 -23.70116 -22.71213 -21.87080 -20.07759 -19.53447 -18.76991 -17.29990 -16.40204 -15.94901 -15.50828 -14.92468 -14.73056 -14.59568 -14.28857 -14.21712 -13.53306 -13.39418 -12.95738 -12.78686 -12.60535 -12.37701 -12.35533 -12.11457 -11.61576 -11.43406 -11.37676 -11.13219 -11.09268 -10.90963 -10.81945 -10.72841 -10.58716 -10.50987 -10.44983 -10.23150 -10.15340 -9.57429 -9.35824 -9.08530 -8.90267 -8.29714 -8.00362 -5.94569 -3.95207 3.34310 3.41783 3.45316 3.46813 4.29704 4.40615 4.46842 4.52282 4.66281 4.70622 4.77505 4.87959 4.94888 5.15227 5.24448 5.34460 5.41423 5.48624 5.52646 5.60650 5.64138 5.65552 5.68911 5.72398 5.78382 5.84602 5.92566 5.93989 5.99915 6.04815 6.11046 6.18342 6.23928 6.28827 6.42719 6.58617 6.74974 7.05047 7.14070 7.26093 7.28410 7.45839 7.45909 7.74024 7.89879 8.06180 8.50611 9.11439 9.68002 11.17089 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016206 B = 0.003842 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.381814 B = 7285.256089 C = 8610.116713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.080 4.080 3 H 0.055 0.945 4 C 0.027 3.973 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.532 5.532 15 C 0.051 3.949 16 C -0.113 4.113 17 C -0.140 4.140 18 C 0.094 3.906 19 H 0.068 0.932 20 O -0.369 6.369 21 C 0.065 3.935 22 C -0.158 4.158 23 C -0.143 4.143 24 C -0.138 4.138 25 C 0.060 3.940 26 H 0.037 0.963 27 H 0.040 0.960 28 H 0.054 0.946 29 H 0.012 0.988 30 H 0.016 0.984 31 H 0.258 0.742 32 H 0.030 0.970 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.030 0.970 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.089 0.911 47 H 0.037 0.963 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.412 9.295 20.709 22.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.011 4.011 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.257 5.257 15 C -0.077 4.077 16 C -0.151 4.151 17 C -0.178 4.178 18 C 0.036 3.964 19 H 0.086 0.914 20 O -0.287 6.287 21 C 0.006 3.994 22 C -0.196 4.196 23 C -0.180 4.180 24 C -0.175 4.175 25 C -0.069 4.069 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.109 0.891 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.055 0.945 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.629 9.316 20.482 22.654 hybrid contribution 0.442 0.155 -0.763 0.895 sum -2.188 9.471 19.719 21.985 Atomic orbital electron populations 1.21566 0.95794 1.00182 1.00296 1.21208 0.95932 0.99089 0.93675 0.92643 1.19127 0.95906 0.95562 0.90496 1.21276 1.34368 1.08233 0.90956 0.92516 1.25022 0.95382 0.95098 0.99082 1.69978 1.39268 1.21281 1.23210 0.86586 0.78239 0.80158 0.83337 1.19740 1.21132 1.21114 1.22320 0.97649 0.97108 0.89300 1.61858 1.56284 1.04929 1.02672 1.22121 0.98908 0.96422 0.90216 1.21528 1.00463 0.95681 0.97410 1.22101 1.01196 0.96679 0.97816 1.22105 0.95479 0.84447 0.94373 0.91363 1.87942 1.37754 1.19044 1.83919 1.23733 0.94937 0.85618 0.95073 1.23493 1.02590 0.95693 0.97774 1.22655 1.00337 0.97034 0.97990 1.23210 1.00318 0.94803 0.99201 1.22012 0.95196 0.91460 0.98188 0.94360 0.94142 0.92649 0.96959 0.96608 0.93198 0.95138 0.91187 0.90652 0.95182 0.91094 0.91522 0.91578 0.92156 0.89794 0.89074 0.91277 0.90175 0.90859 0.91331 0.89221 0.94516 0.89475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.90 37.16 0.33 -2.05 16 2 C -0.08 -1.67 2.34 -90.62 -0.21 -1.88 16 3 H 0.06 1.19 6.51 -51.93 -0.34 0.85 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.43 8.34 -34.44 -0.29 -14.72 16 6 H 0.06 1.57 7.08 -52.49 -0.37 1.20 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 9 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 13 C 0.06 1.12 4.38 -3.82 -0.02 1.10 16 14 N -0.53 -8.04 4.11 -234.68 -0.96 -9.01 16 15 C 0.05 0.65 5.44 -3.84 -0.02 0.63 16 16 C -0.11 -1.19 6.09 -26.65 -0.16 -1.35 16 17 C -0.14 -1.53 5.62 -26.61 -0.15 -1.68 16 18 C 0.09 1.19 2.65 -26.65 -0.07 1.12 16 19 H 0.07 0.88 7.73 -51.93 -0.40 0.47 16 20 O -0.37 -4.82 10.00 -35.23 -0.35 -5.17 16 21 C 0.06 0.67 4.14 -25.92 -0.11 0.56 16 22 C -0.16 -1.56 7.91 -25.91 -0.21 -1.76 16 23 C -0.14 -1.13 8.08 -25.92 -0.21 -1.34 16 24 C -0.14 -1.21 7.91 -25.92 -0.21 -1.42 16 25 C 0.06 0.89 4.96 -3.84 -0.02 0.87 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 28 H 0.05 1.17 6.82 -51.93 -0.35 0.82 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.03 0.56 8.06 -51.93 -0.42 0.14 16 33 H 0.07 1.22 7.87 -51.93 -0.41 0.81 16 34 H 0.08 0.91 7.96 -51.93 -0.41 0.50 16 35 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.78 7.77 -51.93 -0.40 0.38 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.09 1.45 6.43 -51.93 -0.33 1.11 16 LS Contribution 369.44 15.07 5.57 5.57 Total: -1.00 -29.92 369.44 -10.92 -40.84 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -9.33 Total: -2.77 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -1.56 Total: -19.86 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: -0.23 Total: -35.50 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.35 Total: -5.17 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.92 -10.92 -40.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602704217.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.732 kcal (2) G-P(sol) polarization free energy of solvation -29.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds