Wall clock time and date at job start Tue Mar 31 2020 06:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.46900 * 2 1 4 4 C 1.52997 * 109.46983 * 120.00028 * 2 1 3 5 5 C 1.50704 * 109.47200 * 294.99856 * 4 2 1 6 6 H 1.07998 * 119.99988 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00344 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99790 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00411 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46878 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47192 * 120.00126 * 9 7 5 12 12 H 1.48498 * 109.47398 * 240.00265 * 9 7 5 13 13 C 1.53004 * 109.47177 * 239.99757 * 2 1 3 14 14 N 1.46905 * 109.46907 * 63.23836 * 13 2 1 15 15 C 1.46843 * 110.99782 * 195.98773 * 14 13 2 16 16 C 1.53031 * 109.52233 * 174.15961 * 15 14 13 17 17 C 1.53121 * 109.27641 * 59.18105 * 16 15 14 18 18 C 1.53113 * 109.16312 * 302.34529 * 17 16 15 19 19 H 1.09006 * 109.50333 * 297.67431 * 18 17 16 20 20 O 1.42895 * 109.50521 * 177.59378 * 18 17 16 21 21 C 1.42904 * 114.00015 * 89.99916 * 20 18 17 22 22 C 1.53778 * 113.61240 * 110.86388 * 21 20 18 23 23 C 1.53959 * 87.02265 * 89.23159 * 22 21 20 24 24 C 1.53781 * 113.61462 * 208.47070 * 21 20 18 25 25 C 1.46847 * 110.99567 * 71.78189 * 14 13 2 26 26 H 1.09001 * 109.47011 * 65.50431 * 1 2 3 27 27 H 1.09006 * 109.47114 * 185.49987 * 1 2 3 28 28 H 1.09000 * 109.47727 * 305.50230 * 1 2 3 29 29 H 1.08998 * 109.47409 * 54.99694 * 4 2 1 30 30 H 1.09000 * 109.46991 * 175.00197 * 4 2 1 31 31 H 0.96996 * 119.99816 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.46915 * 303.23767 * 13 2 1 33 33 H 1.08997 * 109.46784 * 183.23697 * 13 2 1 34 34 H 1.09005 * 109.45908 * 54.15201 * 15 14 13 35 35 H 1.08992 * 109.45909 * 294.17545 * 15 14 13 36 36 H 1.09003 * 109.51033 * 299.24146 * 16 15 14 37 37 H 1.08999 * 109.53568 * 179.14154 * 16 15 14 38 38 H 1.08998 * 109.52179 * 182.43690 * 17 16 15 39 39 H 1.09004 * 109.57484 * 62.28628 * 17 16 15 40 40 H 1.08994 * 112.84968 * 339.67023 * 21 20 18 41 41 H 1.09000 * 113.61241 * 203.74929 * 22 21 20 42 42 H 1.09001 * 113.61818 * 334.65296 * 22 21 20 43 43 H 1.09000 * 113.53421 * 270.81385 * 23 22 21 44 44 H 1.08998 * 113.66945 * 139.93071 * 23 22 21 45 45 H 1.08996 * 113.61676 * 25.35149 * 24 21 20 46 46 H 1.08999 * 113.61162 * 156.16581 * 24 21 20 47 47 H 1.08993 * 109.46460 * 65.82481 * 25 14 13 48 48 H 1.08999 * 109.46275 * 305.84991 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9922 -0.4022 3.7284 8 7 2.6754 -1.5193 3.8512 9 14 1.4975 0.5622 5.2497 10 1 0.7402 1.7733 4.8435 11 1 0.6432 -0.2871 6.1180 12 1 2.7152 0.9668 5.9971 13 6 2.0400 -0.7213 -1.2492 14 7 1.6152 0.0149 -2.4474 15 6 1.7459 -0.8173 -3.6502 16 6 1.1608 -0.0735 -4.8528 17 6 1.9081 1.2496 -5.0412 18 6 1.7974 2.0767 -3.7574 19 1 0.7505 2.3119 -3.5653 20 8 2.5394 3.2889 -3.9053 21 6 1.7787 4.3746 -4.4389 22 6 1.5117 5.4977 -3.4230 23 6 2.8358 6.1276 -3.8924 24 6 2.6235 5.3908 -5.2255 25 6 2.3640 1.2704 -2.5865 26 1 -0.3633 0.4261 -0.9352 27 1 -0.3634 -1.0230 0.0985 28 1 -0.3634 0.5968 0.8366 29 1 1.6053 -1.7198 1.2952 30 1 3.1262 -0.7994 1.2056 31 1 2.9226 -1.8422 4.7318 32 1 1.6301 -1.7308 -1.2787 33 1 3.1284 -0.7718 -1.2206 34 1 1.2064 -1.7533 -3.5046 35 1 2.7993 -1.0298 -3.8320 36 1 0.1038 0.1274 -4.6776 37 1 1.2714 -0.6847 -5.7485 38 1 1.4663 1.8027 -5.8701 39 1 2.9578 1.0488 -5.2558 40 1 0.8858 4.0450 -4.9701 41 1 0.6342 6.0998 -3.6583 42 1 1.5303 5.1620 -2.3861 43 1 3.7052 5.7794 -3.3348 44 1 2.7963 7.2131 -3.9824 45 1 3.5382 4.9689 -5.6417 46 1 2.0507 5.9625 -5.9556 47 1 3.4145 1.0480 -2.7734 48 1 2.2735 1.8509 -1.6684 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602704218.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:08 Heat of formation + Delta-G solvation = -44.876816 kcal Electronic energy + Delta-G solvation = -22975.078286 eV Core-core repulsion = 19836.724077 eV Total energy + Delta-G solvation = -3138.354209 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.87009 -38.62841 -36.13882 -34.84101 -32.73832 -31.35510 -29.83135 -26.92622 -26.00660 -25.78816 -25.09460 -23.70281 -22.80944 -21.93572 -19.86688 -19.60431 -18.76278 -17.05025 -16.31540 -15.92563 -15.52736 -14.88855 -14.71169 -14.64708 -14.45888 -14.23456 -13.47959 -13.45764 -13.15018 -12.89509 -12.61193 -12.51767 -12.32969 -12.12119 -11.52255 -11.35086 -11.24155 -11.10994 -11.01993 -10.92077 -10.82498 -10.70849 -10.54560 -10.51136 -10.32106 -10.25130 -10.15859 -9.58588 -9.39471 -9.08265 -8.90309 -8.29826 -8.01718 -5.94650 -3.95345 3.31603 3.34235 3.41759 3.46095 4.25047 4.46873 4.50413 4.53681 4.70258 4.76733 4.83849 4.86974 4.93832 5.19874 5.24077 5.35882 5.41402 5.46188 5.52214 5.59292 5.63210 5.67864 5.71332 5.75287 5.83929 5.90124 5.92950 5.93713 6.04097 6.06050 6.12893 6.17701 6.22540 6.27634 6.42774 6.58096 6.74442 7.05690 7.13312 7.23758 7.26625 7.43893 7.45040 7.73402 7.89499 8.06044 8.50543 9.11337 9.67998 11.17021 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016124 B = 0.003928 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.141532 B = 7126.650437 C = 8445.907872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.080 4.080 3 H 0.055 0.945 4 C 0.027 3.973 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.532 5.532 15 C 0.051 3.949 16 C -0.113 4.113 17 C -0.140 4.140 18 C 0.095 3.905 19 H 0.070 0.930 20 O -0.360 6.360 21 C 0.067 3.933 22 C -0.165 4.165 23 C -0.134 4.134 24 C -0.143 4.143 25 C 0.060 3.940 26 H 0.043 0.957 27 H 0.039 0.961 28 H 0.050 0.950 29 H 0.016 0.984 30 H 0.012 0.988 31 H 0.258 0.742 32 H 0.070 0.930 33 H 0.031 0.969 34 H 0.075 0.925 35 H 0.030 0.970 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.088 0.912 47 H 0.037 0.963 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.322 9.020 -20.620 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.011 4.011 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.257 5.257 15 C -0.077 4.077 16 C -0.151 4.151 17 C -0.178 4.178 18 C 0.037 3.963 19 H 0.088 0.912 20 O -0.278 6.278 21 C 0.008 3.992 22 C -0.202 4.202 23 C -0.171 4.171 24 C -0.181 4.181 25 C -0.068 4.068 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.106 0.894 47 H 0.055 0.945 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.539 9.038 -20.389 22.447 hybrid contribution 0.451 0.185 0.785 0.924 sum -2.088 9.223 -19.604 21.765 Atomic orbital electron populations 1.21565 0.95787 1.00626 0.99894 1.21206 0.95950 0.99052 0.93680 0.92682 1.19138 0.95906 0.95533 0.90507 1.21275 1.34356 1.08228 0.90958 0.92548 1.25019 0.95383 0.95096 0.99081 1.69978 1.39275 1.21292 1.23210 0.86586 0.78239 0.80156 0.83338 1.19747 1.21111 1.21131 1.22306 0.97544 0.97267 0.89279 1.61858 1.56456 1.04641 1.02762 1.22122 0.98880 0.96452 0.90227 1.21527 1.00497 0.95631 0.97420 1.22099 1.01263 0.96631 0.97804 1.22128 0.95719 0.83989 0.94441 0.91220 1.87864 1.37178 1.18909 1.83853 1.23032 0.94252 0.86927 0.94948 1.23478 0.98062 0.97896 1.00794 1.22798 0.98318 0.99221 0.96807 1.23151 1.00869 0.97051 0.96987 1.22006 0.95283 0.91444 0.98093 0.93779 0.94185 0.93113 0.96600 0.96972 0.93199 0.91147 0.95116 0.90616 0.95162 0.91070 0.91485 0.92081 0.91566 0.91296 0.89640 0.90475 0.89744 0.91757 0.90758 0.89373 0.94483 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.85 37.16 0.33 -2.05 16 2 C -0.08 -1.66 2.33 -90.62 -0.21 -1.87 16 3 H 0.05 1.18 6.54 -51.93 -0.34 0.84 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.44 8.48 -34.44 -0.29 -14.73 16 6 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 9 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 C 0.06 1.11 4.39 -3.82 -0.02 1.09 16 14 N -0.53 -7.97 3.90 -234.68 -0.91 -8.88 16 15 C 0.05 0.64 5.44 -3.84 -0.02 0.62 16 16 C -0.11 -1.17 6.09 -26.65 -0.16 -1.34 16 17 C -0.14 -1.51 5.62 -26.61 -0.15 -1.66 16 18 C 0.10 1.20 2.65 -26.65 -0.07 1.13 16 19 H 0.07 0.89 7.75 -51.93 -0.40 0.49 16 20 O -0.36 -4.67 9.92 -35.23 -0.35 -5.02 16 21 C 0.07 0.70 4.17 -25.92 -0.11 0.59 16 22 C -0.16 -1.63 7.93 -25.83 -0.20 -1.84 16 23 C -0.13 -1.26 8.02 -25.82 -0.21 -1.47 16 24 C -0.14 -1.26 7.91 -25.92 -0.21 -1.47 16 25 C 0.06 0.89 4.96 -3.83 -0.02 0.87 16 26 H 0.04 0.78 7.55 -51.93 -0.39 0.38 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 1.05 7.12 -51.93 -0.37 0.69 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.07 1.22 7.87 -51.93 -0.41 0.81 16 33 H 0.03 0.56 8.05 -51.93 -0.42 0.14 16 34 H 0.08 0.91 7.96 -51.93 -0.41 0.50 16 35 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.64 7.80 -51.93 -0.40 0.24 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.09 1.43 6.44 -51.93 -0.33 1.10 16 LS Contribution 369.29 15.07 5.57 5.57 Total: -1.00 -29.90 369.29 -10.87 -40.77 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -9.33 Total: -2.77 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -1.56 Total: -20.08 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: -0.18 Total: -35.38 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.35 Total: -5.02 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.90 -10.87 -40.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602704218.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.103 kcal (2) G-P(sol) polarization free energy of solvation -29.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds