Wall clock time and date at job start Tue Mar 31 2020 05:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47297 * 2 1 4 4 C 1.53004 * 109.47243 * 119.99754 * 2 1 3 5 5 C 1.50701 * 109.47211 * 295.00691 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48494 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47301 * 119.99669 * 9 7 5 12 12 H 1.48498 * 109.47430 * 239.99516 * 9 7 5 13 13 C 1.52995 * 109.47523 * 240.00122 * 2 1 3 14 14 N 1.46901 * 109.47205 * 65.00112 * 13 2 1 15 15 C 1.47610 * 111.00120 * 69.87556 * 14 13 2 16 16 C 1.53625 * 107.05609 * 123.73140 * 15 14 13 17 17 C 1.54434 * 103.79946 * 21.56593 * 16 15 14 18 18 C 1.47906 * 110.99949 * 190.68323 * 14 13 2 19 19 H 1.08995 * 110.36137 * 332.62562 * 18 14 13 20 20 C 1.53004 * 110.35938 * 94.93005 * 18 14 13 21 21 C 1.52355 * 110.72016 * 263.22954 * 16 15 14 22 22 C 1.53237 * 109.23872 * 291.85622 * 21 16 15 23 23 O 1.42913 * 109.31364 * 303.64081 * 22 21 16 24 24 C 1.42919 * 114.24101 * 61.74254 * 23 22 21 25 25 C 1.52348 * 110.71786 * 139.90118 * 16 15 14 26 26 H 1.09004 * 109.47261 * 59.99991 * 1 2 3 27 27 H 1.09000 * 109.46966 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47367 * 300.00045 * 1 2 3 29 29 H 1.09000 * 109.47211 * 174.99718 * 4 2 1 30 30 H 1.09007 * 109.46376 * 55.00260 * 4 2 1 31 31 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.47460 * 184.99827 * 13 2 1 33 33 H 1.09001 * 109.46993 * 305.00025 * 13 2 1 34 34 H 1.09005 * 109.91280 * 243.08185 * 15 14 13 35 35 H 1.08992 * 109.91592 * 4.17507 * 15 14 13 36 36 H 1.08996 * 110.99961 * 83.18272 * 17 16 15 37 37 H 1.09000 * 110.99748 * 206.99016 * 17 16 15 38 38 H 1.09004 * 109.46802 * 58.54913 * 20 18 14 39 39 H 1.09004 * 109.47218 * 178.54101 * 20 18 14 40 40 H 1.08993 * 109.47482 * 298.54400 * 20 18 14 41 41 H 1.09000 * 109.50633 * 51.78639 * 21 16 15 42 42 H 1.08999 * 109.50680 * 171.92424 * 21 16 15 43 43 H 1.08989 * 109.50004 * 183.68363 * 22 21 16 44 44 H 1.09007 * 109.52033 * 63.60443 * 22 21 16 45 45 H 1.09007 * 109.50092 * 178.29479 * 24 23 22 46 46 H 1.09006 * 109.52081 * 58.21970 * 24 23 22 47 47 H 1.09006 * 109.50871 * 188.06715 * 25 16 15 48 48 H 1.08993 * 109.51390 * 308.16585 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0804 0.9745 2.3757 7 6 1.9976 -0.3990 3.7280 8 7 2.6807 -1.5161 3.8509 9 14 1.5100 0.5697 5.2489 10 1 0.7525 1.7806 4.8427 11 1 0.6591 -0.2768 6.1234 12 1 2.7312 0.9758 5.9898 13 6 2.0400 -0.7212 -1.2492 14 7 1.6515 0.0375 -2.4456 15 6 2.4051 1.3034 -2.5372 16 6 3.1162 1.3070 -3.8990 17 6 2.3015 0.3021 -4.7425 18 6 1.8993 -0.7473 -3.6746 19 1 2.7117 -1.4560 -3.5145 20 6 0.6272 -1.4817 -4.1027 21 6 4.5565 0.8314 -3.7562 22 6 5.3569 1.8742 -2.9688 23 8 5.2584 3.1399 -3.6251 24 6 3.9280 3.6549 -3.7101 25 6 3.0633 2.6922 -4.5309 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 3.1263 -0.7995 1.2056 30 1 1.6053 -1.7198 1.2951 31 1 2.9317 -1.8367 4.7312 32 1 3.1263 -0.7994 -1.2055 33 1 1.6054 -1.7197 -1.2951 34 1 1.7200 2.1488 -2.4738 35 1 3.1378 1.3583 -1.7322 36 1 1.4209 0.7778 -5.1739 37 1 2.9201 -0.1476 -5.5193 38 1 -0.1703 -0.7583 -4.2726 39 1 0.8186 -2.0340 -5.0228 40 1 0.3269 -2.1760 -3.3180 41 1 4.5748 -0.1196 -3.2239 42 1 4.9976 0.7044 -4.7449 43 1 6.4023 1.5699 -2.9204 44 1 4.9546 1.9557 -1.9590 45 1 3.9459 4.6311 -4.1947 46 1 3.5110 3.7539 -2.7078 47 1 3.4433 2.6415 -5.5514 48 1 2.0330 3.0476 -4.5434 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602704969.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:20 Heat of formation + Delta-G solvation = -71.503849 kcal Electronic energy + Delta-G solvation = -23814.221408 eV Core-core repulsion = 20674.712565 eV Total energy + Delta-G solvation = -3139.508844 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.70258 -38.05074 -35.51960 -33.42722 -32.31061 -31.30674 -30.77324 -28.01094 -26.78518 -26.00648 -24.60767 -23.77631 -23.10495 -22.09054 -20.10173 -19.11687 -18.32432 -16.57495 -16.21060 -16.12466 -15.76185 -15.18508 -14.72027 -14.46239 -14.14081 -13.99560 -13.68572 -13.59480 -12.86821 -12.67140 -12.51107 -12.32377 -12.11099 -11.97841 -11.71320 -11.49774 -11.39192 -11.36547 -11.11309 -11.07221 -10.85650 -10.76817 -10.63640 -10.45739 -10.26897 -10.18123 -10.15317 -9.64346 -9.45781 -9.10296 -8.92335 -8.32257 -7.97664 -5.96916 -3.97784 3.32355 3.40050 3.44166 3.79403 4.13542 4.38127 4.45077 4.49133 4.67101 4.88834 4.99706 5.10240 5.11486 5.21295 5.33266 5.39080 5.41590 5.53362 5.56154 5.59680 5.61871 5.66173 5.74360 5.77043 5.84621 5.87997 5.91277 5.95884 5.99269 6.15808 6.18729 6.20087 6.27392 6.36407 6.43717 6.57645 6.73545 7.05294 7.11019 7.15041 7.23033 7.35403 7.49366 7.70791 7.86690 8.03609 8.48085 9.08858 9.65709 11.14693 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017726 B = 0.004533 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.209468 B = 6175.211019 C = 7047.446766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.078 4.078 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.057 3.943 14 N -0.519 5.519 15 C 0.053 3.947 16 C -0.082 4.082 17 C -0.112 4.112 18 C 0.066 3.934 19 H 0.050 0.950 20 C -0.132 4.132 21 C -0.140 4.140 22 C 0.058 3.942 23 O -0.385 6.385 24 C 0.058 3.942 25 C -0.136 4.136 26 H 0.042 0.958 27 H 0.038 0.962 28 H 0.052 0.948 29 H 0.011 0.989 30 H 0.015 0.985 31 H 0.258 0.742 32 H 0.027 0.973 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.093 0.907 44 H 0.056 0.944 45 H 0.091 0.909 46 H 0.054 0.946 47 H 0.069 0.931 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.094 5.081 -19.210 19.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.097 4.097 3 H 0.071 0.929 4 C -0.011 4.011 5 C -0.548 4.548 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.070 4.070 14 N -0.243 5.243 15 C -0.075 4.075 16 C -0.083 4.083 17 C -0.150 4.150 18 C -0.042 4.042 19 H 0.068 0.932 20 C -0.190 4.190 21 C -0.177 4.177 22 C -0.019 4.019 23 O -0.303 6.303 24 C -0.019 4.019 25 C -0.174 4.174 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.029 0.971 30 H 0.033 0.967 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.111 0.889 44 H 0.075 0.925 45 H 0.109 0.891 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.789 5.158 -19.093 19.793 hybrid contribution 0.441 -0.020 1.075 1.162 sum 1.230 5.138 -18.018 18.777 Atomic orbital electron populations 1.21562 0.95800 1.00389 1.00093 1.21179 0.95947 0.98870 0.93692 0.92883 1.19133 0.95792 0.95571 0.90576 1.21266 1.34323 1.08274 0.90973 0.92567 1.25014 0.95352 0.95096 0.99074 1.69974 1.39181 1.21327 1.23244 0.86593 0.78232 0.80185 0.83346 1.19753 1.21080 1.21129 1.22480 0.97248 0.97264 0.90044 1.63625 1.54932 1.03979 1.01738 1.22886 0.95761 0.93823 0.95033 1.21283 0.95016 0.95418 0.96551 1.22743 0.99446 0.95845 0.96942 1.22559 0.96822 0.94795 0.90021 0.93187 1.21669 0.97245 0.99930 1.00180 1.22074 0.94790 0.99354 1.01512 1.22656 1.00704 0.83176 0.95316 1.87889 1.27397 1.35674 1.79390 1.22633 0.82957 0.96640 0.99622 1.22042 1.00839 0.94664 0.99855 0.93937 0.94327 0.92888 0.97081 0.96657 0.93184 0.95459 0.91525 0.90823 0.92146 0.90616 0.91289 0.92150 0.93026 0.92526 0.90962 0.91147 0.88921 0.92537 0.89089 0.92781 0.91248 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.89 37.15 0.33 -2.05 16 2 C -0.08 -1.60 2.31 -90.62 -0.21 -1.81 16 3 H 0.05 1.12 7.05 -51.92 -0.37 0.75 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.33 8.41 -34.44 -0.29 -14.62 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 9 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.06 0.99 3.93 -3.83 -0.02 0.98 16 14 N -0.52 -7.56 4.27 -223.56 -0.96 -8.52 16 15 C 0.05 0.71 4.42 -3.11 -0.01 0.70 16 16 C -0.08 -0.89 0.53 -154.09 -0.08 -0.98 16 17 C -0.11 -1.16 5.41 -24.90 -0.13 -1.30 16 18 C 0.07 0.81 2.71 -66.08 -0.18 0.63 16 19 H 0.05 0.64 7.53 -51.93 -0.39 0.25 16 20 C -0.13 -1.50 9.58 37.16 0.36 -1.14 16 21 C -0.14 -1.53 4.74 -26.94 -0.13 -1.66 16 22 C 0.06 0.68 6.66 37.28 0.25 0.92 16 23 O -0.38 -4.79 10.75 -35.23 -0.38 -5.17 16 24 C 0.06 0.61 6.67 37.28 0.25 0.85 16 25 C -0.14 -1.32 4.77 -26.94 -0.13 -1.45 16 26 H 0.04 0.76 7.75 -51.93 -0.40 0.35 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.03 0.49 7.96 -51.93 -0.41 0.07 16 33 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 34 H 0.07 1.00 7.71 -51.93 -0.40 0.60 16 35 H 0.06 0.91 5.15 -51.93 -0.27 0.64 16 36 H 0.08 0.77 7.93 -51.93 -0.41 0.35 16 37 H 0.07 0.65 8.00 -51.93 -0.42 0.23 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.85 7.65 -51.93 -0.40 0.45 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 0.96 8.14 -51.94 -0.42 0.54 16 44 H 0.06 0.71 6.68 -51.93 -0.35 0.37 16 45 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 46 H 0.05 0.58 7.64 -51.93 -0.40 0.19 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.08 0.69 8.01 -51.93 -0.42 0.27 16 LS Contribution 358.99 15.07 5.41 5.41 Total: -1.00 -29.87 358.99 -9.56 -39.43 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -9.14 Total: -2.73 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -0.22 Total: -18.87 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: -0.22 Total: -34.85 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.38 Total: -5.17 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.87 -9.56 -39.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602704969.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.072 kcal (2) G-P(sol) polarization free energy of solvation -29.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds