Wall clock time and date at job start Tue Mar 31 2020 05:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46904 * 2 1 4 4 C 1.53002 * 109.47416 * 119.99929 * 2 1 3 5 5 C 1.50700 * 109.47168 * 296.07361 * 4 2 1 6 6 H 1.08003 * 119.99771 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00020 * 180.02562 * 5 4 2 8 8 N 1.31509 * 119.99874 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99929 * 179.72461 * 7 5 4 10 10 H 1.48498 * 109.46998 * 180.27230 * 9 7 5 11 11 H 1.48494 * 109.46983 * 300.27545 * 9 7 5 12 12 H 1.48508 * 109.46937 * 60.27427 * 9 7 5 13 13 C 1.52996 * 109.47243 * 240.00244 * 2 1 3 14 14 N 1.46900 * 109.47088 * 173.65150 * 13 2 1 15 15 C 1.48027 * 111.00492 * 86.52477 * 14 13 2 16 16 C 1.53525 * 106.87494 * 214.23248 * 15 14 13 17 17 C 1.54106 * 105.63039 * 1.35185 * 16 15 14 18 18 C 1.48583 * 110.99851 * 329.10257 * 14 13 2 19 19 H 1.08993 * 110.65220 * 41.00247 * 18 14 13 20 20 C 1.52992 * 110.65878 * 277.89794 * 18 14 13 21 21 C 1.52612 * 110.33187 * 242.44044 * 16 15 14 22 22 C 1.53201 * 109.19667 * 293.48343 * 21 16 15 23 23 O 1.42906 * 109.34410 * 303.29226 * 22 21 16 24 24 C 1.42927 * 114.21725 * 61.59287 * 23 22 21 25 25 C 1.52618 * 110.33424 * 120.26001 * 16 15 14 26 26 H 1.08999 * 109.47144 * 305.03600 * 1 2 3 27 27 H 1.08995 * 109.47522 * 65.04149 * 1 2 3 28 28 H 1.09007 * 109.46761 * 185.04305 * 1 2 3 29 29 H 1.08998 * 109.47161 * 176.07525 * 4 2 1 30 30 H 1.08992 * 109.47029 * 56.07029 * 4 2 1 31 31 H 0.97005 * 120.00148 * 359.72287 * 8 7 5 32 32 H 1.08996 * 109.47181 * 293.64973 * 13 2 1 33 33 H 1.08999 * 109.47294 * 53.65341 * 13 2 1 34 34 H 1.09002 * 109.97225 * 333.58326 * 15 14 13 35 35 H 1.08998 * 109.97775 * 94.83368 * 15 14 13 36 36 H 1.09000 * 110.74771 * 139.98736 * 17 16 15 37 37 H 1.09008 * 110.74036 * 263.14897 * 17 16 15 38 38 H 1.08997 * 109.47343 * 61.45604 * 20 18 14 39 39 H 1.09001 * 109.46963 * 181.45435 * 20 18 14 40 40 H 1.09002 * 109.47365 * 301.45498 * 20 18 14 41 41 H 1.08996 * 109.51870 * 53.40137 * 21 16 15 42 42 H 1.08999 * 109.52002 * 173.56846 * 21 16 15 43 43 H 1.09002 * 109.49361 * 183.33180 * 22 21 16 44 44 H 1.09000 * 109.49180 * 63.25331 * 22 21 16 45 45 H 1.08997 * 109.48709 * 178.44184 * 24 23 22 46 46 H 1.09001 * 109.51200 * 58.38067 * 24 23 22 47 47 H 1.09003 * 109.51616 * 186.42291 * 25 16 15 48 48 H 1.08999 * 109.51811 * 306.59583 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6188 0.0431 2.4778 6 1 1.0450 0.9526 2.3776 7 6 1.9668 -0.4181 3.7297 8 7 2.6659 -1.5252 3.8517 9 14 1.4511 0.5335 5.2522 10 1 1.9513 -0.1633 6.4644 11 1 2.0227 1.9029 5.1972 12 1 -0.0306 0.6173 5.3054 13 6 2.0400 -0.7212 -1.2492 14 7 3.5010 -0.5899 -1.3282 15 6 4.1723 -1.6599 -0.5564 16 6 5.4501 -1.0480 0.0352 17 6 5.4493 0.4270 -0.4113 18 6 3.9539 0.6903 -0.7253 19 1 3.4004 0.9014 0.1896 20 6 3.8065 1.8395 -1.7245 21 6 6.6828 -1.7604 -0.5143 22 6 6.6990 -3.2049 -0.0040 23 8 6.6645 -3.2026 1.4246 24 6 5.4921 -2.6044 1.9818 25 6 5.4231 -1.1336 1.5587 26 1 -0.3633 0.5900 0.8414 27 1 -0.3634 0.4336 -0.9316 28 1 -0.3633 -1.0238 0.0903 29 1 3.1278 -0.7825 1.2147 30 1 1.6204 -1.7265 1.2852 31 1 2.9333 -2.0196 3.0611 32 1 1.7725 -1.7764 -1.1943 33 1 1.5869 -0.2771 -2.1356 34 1 3.5198 -2.0063 0.2451 35 1 4.4266 -2.4905 -1.2147 36 1 5.7944 1.0746 0.3947 37 1 6.0632 0.5611 -1.3021 38 1 2.7568 1.9536 -1.9947 39 1 4.1677 2.7630 -1.2720 40 1 4.3901 1.6205 -2.6187 41 1 6.6486 -1.7595 -1.6037 42 1 7.5820 -1.2450 -0.1770 43 1 7.6077 -3.7009 -0.3451 44 1 5.8282 -3.7361 -0.3881 45 1 5.5328 -2.6686 3.0691 46 1 4.6082 -3.1291 1.6192 47 1 6.2781 -0.5962 1.9689 48 1 4.4999 -0.6902 1.9320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602704977.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:36 Heat of formation + Delta-G solvation = -51.543376 kcal Electronic energy + Delta-G solvation = -25258.107009 eV Core-core repulsion = 22119.463717 eV Total energy + Delta-G solvation = -3138.643293 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -40.65403 -38.09751 -35.27598 -33.41670 -32.03063 -30.90565 -30.81119 -27.69609 -26.85754 -25.63163 -23.96759 -23.57913 -23.03159 -21.92495 -20.66275 -18.36355 -18.31332 -16.81836 -15.99022 -15.76345 -15.70327 -14.92111 -14.38851 -14.28194 -13.83088 -13.63231 -13.52698 -13.29907 -12.83921 -12.71211 -12.27132 -11.96428 -11.82137 -11.69514 -11.67395 -11.29057 -11.22142 -11.04809 -10.89817 -10.86526 -10.75653 -10.62363 -10.45119 -10.40905 -10.16476 -10.10769 -9.78432 -9.50447 -9.20203 -9.02547 -8.65341 -8.33371 -7.65950 -6.36143 -4.05064 3.41630 3.41985 3.60852 4.24043 4.43776 4.51805 4.78304 4.88854 5.05155 5.32866 5.34948 5.37992 5.49569 5.54283 5.56402 5.60921 5.72806 5.79397 5.84105 5.88926 5.93621 5.95404 6.00845 6.04432 6.10238 6.13569 6.16824 6.19247 6.26326 6.32349 6.35109 6.41680 6.50416 6.57865 6.64884 6.68605 6.72108 6.82667 6.93851 6.99488 7.36963 7.38694 7.47085 7.57528 7.60449 8.21396 8.45086 8.87879 9.63527 11.02854 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013481 B = 0.008370 C = 0.006102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.554844 B = 3344.454903 C = 4587.286642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.120 4.120 3 H 0.070 0.930 4 C -0.009 4.009 5 C -0.595 4.595 6 H 0.046 0.954 7 C 0.018 3.982 8 N -0.911 5.911 9 Si 1.061 2.939 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.290 1.290 13 C 0.046 3.954 14 N -0.508 5.508 15 C 0.030 3.970 16 C -0.065 4.065 17 C -0.107 4.107 18 C 0.038 3.962 19 H 0.094 0.906 20 C -0.131 4.131 21 C -0.137 4.137 22 C 0.060 3.940 23 O -0.389 6.389 24 C 0.068 3.932 25 C -0.153 4.153 26 H 0.059 0.941 27 H 0.031 0.969 28 H 0.043 0.957 29 H 0.041 0.959 30 H 0.000 1.000 31 H 0.268 0.732 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.099 0.901 46 H 0.049 0.951 47 H 0.063 0.937 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.310 1.191 -9.616 11.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.139 4.139 3 H 0.088 0.912 4 C -0.045 4.045 5 C -0.633 4.633 6 H 0.064 0.936 7 C -0.186 4.186 8 N -0.548 5.548 9 Si 0.890 3.110 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.217 1.217 13 C -0.082 4.082 14 N -0.232 5.232 15 C -0.098 4.098 16 C -0.065 4.065 17 C -0.145 4.145 18 C -0.069 4.069 19 H 0.111 0.889 20 C -0.188 4.188 21 C -0.174 4.174 22 C -0.017 4.017 23 O -0.308 6.308 24 C -0.008 4.008 25 C -0.190 4.190 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.018 0.982 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.065 0.935 45 H 0.117 0.883 46 H 0.067 0.933 47 H 0.081 0.919 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.665 1.078 -8.411 10.198 hybrid contribution -0.769 0.169 -1.011 1.282 sum 4.895 1.247 -9.422 10.691 Atomic orbital electron populations 1.21627 0.96077 1.01038 0.99816 1.21811 0.95748 1.00435 0.95956 0.91176 1.19862 0.97319 0.95045 0.92260 1.22028 1.38060 1.11017 0.92232 0.93560 1.25678 0.94863 0.97032 1.01015 1.70828 1.35292 1.15254 1.33382 0.83638 0.76011 0.75282 0.76043 1.20825 1.21628 1.21704 1.22409 0.87984 1.00253 0.97547 1.65034 1.06122 1.01958 1.50048 1.23257 0.94899 0.94793 0.96811 1.20981 0.94530 0.95477 0.95543 1.22560 0.96367 0.95013 1.00542 1.23189 0.95099 0.90484 0.98149 0.88889 1.21618 1.01492 0.96814 0.98916 1.22141 0.98115 0.96646 1.00540 1.22563 1.01302 0.95809 0.82037 1.87877 1.42985 1.80613 1.19362 1.22590 0.86820 0.92300 0.99105 1.22422 1.04655 0.97904 0.94009 0.92180 0.94954 0.93814 0.94136 0.98168 0.92099 0.92178 0.91901 0.91009 0.91625 0.91412 0.91445 0.92961 0.92828 0.92648 0.91044 0.91429 0.89631 0.93451 0.88290 0.93301 0.91867 0.87518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 8.90 37.16 0.33 -2.06 16 2 C -0.12 -2.36 1.81 -90.62 -0.16 -2.52 16 3 H 0.07 1.42 5.55 -51.93 -0.29 1.13 16 4 C -0.01 -0.20 1.94 -27.88 -0.05 -0.26 16 5 C -0.60 -15.72 8.46 -34.44 -0.29 -16.01 16 6 H 0.05 1.24 6.99 -52.48 -0.37 0.87 16 7 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 8 N -0.91 -25.54 13.65 55.43 0.76 -24.78 16 9 Si 1.06 24.57 29.90 -169.99 -5.08 19.49 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.05 0.80 5.14 -3.83 -0.02 0.78 16 14 N -0.51 -8.51 5.23 -222.72 -1.17 -9.67 16 15 C 0.03 0.51 4.19 -2.93 -0.01 0.50 16 16 C -0.06 -1.03 0.55 -154.05 -0.09 -1.11 16 17 C -0.11 -1.64 5.58 -25.07 -0.14 -1.78 16 18 C 0.04 0.63 1.90 -65.70 -0.13 0.51 16 19 H 0.09 1.83 4.16 -51.93 -0.22 1.61 16 20 C -0.13 -1.85 9.32 37.15 0.35 -1.51 16 21 C -0.14 -1.88 4.60 -26.83 -0.12 -2.00 16 22 C 0.06 0.84 6.63 37.26 0.25 1.09 16 23 O -0.39 -6.71 10.75 -35.23 -0.38 -7.08 16 24 C 0.07 1.25 6.36 37.26 0.24 1.49 16 25 C -0.15 -2.79 4.47 -26.83 -0.12 -2.91 16 26 H 0.06 1.21 7.03 -51.93 -0.37 0.84 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.91 1.16 -51.93 -0.06 0.85 16 30 H 0.00 0.00 7.96 -51.93 -0.41 -0.41 16 31 H 0.27 7.33 6.74 -40.82 -0.28 7.06 16 32 H 0.06 1.06 7.81 -51.93 -0.41 0.66 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.40 3.76 -51.93 -0.20 1.21 16 35 H 0.07 1.05 6.71 -51.93 -0.35 0.70 16 36 H 0.07 1.04 7.82 -51.93 -0.41 0.64 16 37 H 0.07 0.94 7.75 -51.92 -0.40 0.54 16 38 H 0.05 0.74 8.01 -51.93 -0.42 0.33 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.05 0.66 6.94 -51.93 -0.36 0.30 16 45 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 46 H 0.05 0.93 7.01 -51.93 -0.36 0.57 16 47 H 0.06 1.13 8.13 -51.93 -0.42 0.70 16 48 H 0.11 2.32 5.29 -51.93 -0.27 2.05 16 LS Contribution 338.25 15.07 5.10 5.10 Total: -1.00 -27.39 338.25 -9.02 -36.42 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -8.18 Total: 5.94 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: -0.07 Total: -25.41 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: -0.41 Total: -34.46 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.38 Total: -7.08 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -5.08 Total: 19.49 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.39 -9.02 -36.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602704977.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.128 kcal (2) G-P(sol) polarization free energy of solvation -27.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds