Wall clock time and date at job start Tue Mar 31 2020 06:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46629 * 2 1 4 4 O 1.42895 * 109.47108 * 120.00165 * 2 1 3 5 5 C 1.52998 * 109.46908 * 240.00393 * 2 1 3 6 6 N 1.46901 * 109.47182 * 174.59320 * 5 2 1 7 7 C 1.46897 * 111.00355 * 270.34425 * 6 5 2 8 8 C 1.52994 * 109.47423 * 74.59228 * 7 6 5 9 9 C 1.50702 * 115.55069 * 53.17897 * 8 7 6 10 10 H 1.08002 * 119.99963 * 2.44638 * 9 8 7 11 11 C 1.37878 * 120.00060 * 182.17177 * 9 8 7 12 12 N 1.31515 * 119.99732 * 0.27581 * 11 9 8 13 13 Si 1.86795 * 119.99781 * 180.27510 * 11 9 8 14 14 H 1.48504 * 109.47375 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47258 * 120.00223 * 13 11 9 16 16 H 1.48501 * 109.46984 * 239.99985 * 13 11 9 17 17 C 1.52998 * 117.52010 * 198.88042 * 8 7 6 18 18 C 1.52991 * 60.00239 * 107.48259 * 17 8 7 19 19 C 1.46896 * 110.99903 * 146.38278 * 6 5 2 20 20 C 1.53000 * 109.47289 * 52.33788 * 19 6 5 21 21 C 1.52998 * 109.47403 * 179.97438 * 20 19 6 22 22 C 1.53003 * 109.46859 * 60.00078 * 21 20 19 23 23 C 1.53006 * 109.47232 * 299.99892 * 22 21 20 24 24 C 1.52992 * 109.47595 * 292.33335 * 19 6 5 25 25 H 1.09000 * 109.47494 * 299.99472 * 1 2 3 26 26 H 1.08999 * 109.47407 * 59.99895 * 1 2 3 27 27 H 1.09002 * 109.47204 * 179.97438 * 1 2 3 28 28 H 0.96692 * 114.00627 * 304.84978 * 4 2 1 29 29 H 1.09006 * 109.47433 * 54.59579 * 5 2 1 30 30 H 1.08997 * 109.47316 * 294.59440 * 5 2 1 31 31 H 1.09009 * 109.46779 * 314.59312 * 7 6 5 32 32 H 1.08998 * 109.47201 * 194.59934 * 7 6 5 33 33 H 0.97005 * 119.99447 * 180.02562 * 12 11 9 34 34 H 1.09003 * 117.50011 * 214.97639 * 17 8 7 35 35 H 1.09001 * 117.49980 * 359.97438 * 17 8 7 36 36 H 1.09003 * 117.50205 * 252.51231 * 18 17 8 37 37 H 1.09003 * 117.52027 * 107.48233 * 18 17 8 38 38 H 1.09008 * 109.47171 * 172.33364 * 19 6 5 39 39 H 1.08996 * 109.46921 * 300.00162 * 20 19 6 40 40 H 1.09006 * 109.46862 * 59.99813 * 20 19 6 41 41 H 1.09003 * 109.47276 * 300.00232 * 21 20 19 42 42 H 1.08994 * 109.47520 * 179.97438 * 21 20 19 43 43 H 1.09002 * 109.47064 * 180.02562 * 22 21 20 44 44 H 1.08998 * 109.47510 * 59.99986 * 22 21 20 45 45 H 1.08998 * 109.46950 * 300.00437 * 23 22 21 46 46 H 1.08996 * 109.47214 * 180.02562 * 23 22 21 47 47 H 1.09006 * 109.47185 * 300.00526 * 24 19 6 48 48 H 1.08998 * 109.47158 * 60.00232 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0399 -0.7212 -1.2493 6 7 3.5031 -0.6092 -1.3164 7 6 3.9057 0.5961 -2.0533 8 6 3.6758 1.8297 -1.1779 9 6 4.3068 1.7829 0.1898 10 1 4.9088 0.9338 0.4780 11 6 4.1203 2.8267 1.0712 12 7 3.3873 3.8606 0.7202 13 14 4.9089 2.7721 2.7637 14 1 5.6782 1.5105 2.9109 15 1 5.8243 3.9308 2.9209 16 1 3.8514 2.8320 3.8045 17 6 3.6040 3.1889 -1.8766 18 6 2.3332 2.5510 -1.3121 19 6 4.0964 -1.8135 -1.9125 20 6 3.4151 -2.1092 -3.2502 21 6 4.0335 -3.3632 -3.8714 22 6 3.8378 -4.5502 -2.9261 23 6 4.5192 -4.2546 -1.5884 24 6 3.9004 -3.0003 -0.9671 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6616 -0.3155 1.9961 29 1 1.5997 -0.2662 -2.1367 30 1 1.7578 -1.7729 -1.2023 31 1 3.3120 0.6807 -2.9635 32 1 4.9619 0.5270 -2.3136 33 1 3.2564 4.5951 1.3402 34 1 4.0133 4.0493 -1.3471 35 1 3.7210 3.2046 -2.9602 36 1 1.6138 2.1468 -2.0243 37 1 1.9061 2.9912 -0.4111 38 1 5.1619 -1.6511 -2.0756 39 1 2.3497 -2.2715 -3.0872 40 1 3.5549 -1.2636 -3.9238 41 1 5.0989 -3.2003 -4.0344 42 1 3.5479 -3.5740 -4.8241 43 1 4.2787 -5.4435 -3.3684 44 1 2.7725 -4.7130 -2.7630 45 1 5.5845 -4.0917 -1.7514 46 1 4.3801 -5.1004 -0.9151 47 1 4.3858 -2.7897 -0.0140 48 1 2.8350 -3.1628 -0.8040 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602773973.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:34 Heat of formation + Delta-G solvation = -27.122317 kcal Electronic energy + Delta-G solvation = -24715.297144 eV Core-core repulsion = 21577.712828 eV Total energy + Delta-G solvation = -3137.584316 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.37896 -37.22329 -35.94331 -34.38790 -31.41053 -30.66914 -30.53962 -28.84043 -26.57219 -25.36790 -23.79697 -22.34598 -21.19528 -20.94702 -20.28194 -18.77792 -18.74541 -16.35366 -15.94861 -15.50505 -14.83139 -14.67725 -14.45226 -13.99473 -13.73454 -13.56118 -13.39258 -13.10576 -12.69638 -12.55614 -12.07900 -11.96580 -11.87108 -11.75152 -11.32277 -11.17451 -10.99736 -10.94111 -10.86023 -10.78441 -10.47393 -10.31660 -10.11500 -10.03740 -9.95924 -9.92513 -9.67870 -9.36633 -8.98888 -8.59285 -8.14015 -7.85565 -7.33333 -5.82555 -3.82775 3.35584 3.44669 3.52630 4.46201 4.52983 4.86263 4.95031 5.07655 5.12107 5.23197 5.36982 5.43036 5.61646 5.65262 5.70575 5.75835 5.79097 5.83890 5.90612 5.94115 5.99283 6.05065 6.10460 6.13666 6.24369 6.27098 6.32379 6.34500 6.36252 6.44966 6.47898 6.57147 6.63950 6.68962 6.76292 6.78338 7.08097 7.21527 7.35979 7.37193 7.76242 7.93318 8.03354 8.18794 8.26472 8.62078 8.69055 9.16294 9.70408 11.13564 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018162 B = 0.006026 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.342280 B = 4645.231750 C = 4700.315203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.084 3.916 3 H 0.118 0.882 4 O -0.552 6.552 5 C 0.077 3.923 6 N -0.499 5.499 7 C 0.100 3.900 8 C 0.029 3.971 9 C -0.430 4.430 10 H 0.068 0.932 11 C 0.049 3.951 12 N -0.891 5.891 13 Si 0.892 3.108 14 H -0.272 1.272 15 H -0.290 1.290 16 H -0.288 1.288 17 C -0.193 4.193 18 C -0.193 4.193 19 C 0.087 3.913 20 C -0.153 4.153 21 C -0.113 4.113 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.105 4.105 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.360 0.640 29 H 0.038 0.962 30 H 0.060 0.940 31 H 0.011 0.989 32 H 0.059 0.941 33 H 0.254 0.746 34 H 0.105 0.895 35 H 0.038 0.962 36 H 0.034 0.966 37 H 0.116 0.884 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.072 0.928 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.595 -11.806 -5.531 13.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.025 3.975 3 H 0.135 0.865 4 O -0.355 6.355 5 C -0.051 4.051 6 N -0.220 5.220 7 C -0.027 4.027 8 C 0.028 3.972 9 C -0.468 4.468 10 H 0.086 0.914 11 C -0.150 4.150 12 N -0.531 5.531 13 Si 0.721 3.279 14 H -0.197 1.197 15 H -0.217 1.217 16 H -0.215 1.215 17 C -0.232 4.232 18 C -0.231 4.231 19 C -0.022 4.022 20 C -0.193 4.193 21 C -0.152 4.152 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.143 4.143 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.205 0.795 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.029 0.971 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.124 0.876 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.134 0.866 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.091 0.909 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.135 -11.953 -5.411 13.293 hybrid contribution -0.479 0.471 0.328 0.748 sum -2.614 -11.482 -5.084 12.826 Atomic orbital electron populations 1.22563 0.99092 1.00879 1.01810 1.22419 0.89433 1.00340 0.85269 0.86504 1.86497 1.73417 1.60404 1.15193 1.22006 0.88491 0.99106 0.95547 1.61897 1.07830 1.00586 1.51718 1.21723 0.98394 0.90005 0.92622 1.19005 0.96458 0.86778 0.94931 1.20580 1.27840 1.02847 0.95541 0.91391 1.24998 0.95907 0.95693 0.98385 1.70026 1.39764 1.08320 1.35009 0.86513 0.79087 0.77707 0.84566 1.19695 1.21673 1.21459 1.22811 1.04180 1.01647 0.94515 1.22911 0.90941 1.07360 1.01860 1.21763 0.98608 0.90837 0.90956 1.22338 1.00593 0.97552 0.98778 1.21461 1.00795 0.95058 0.97851 1.21535 1.00600 0.97452 0.95969 1.21552 0.99876 0.98036 0.96170 1.21525 1.01055 0.92725 0.98957 0.92827 0.92493 0.93428 0.79522 0.94431 0.92170 0.97124 0.92281 0.93604 0.87642 0.94338 0.94768 0.86610 0.90718 0.92079 0.92325 0.92168 0.92733 0.92632 0.92355 0.92215 0.92355 0.90891 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.95 9.50 37.16 0.35 -2.60 16 2 C 0.08 1.61 3.29 -26.73 -0.09 1.52 16 3 H 0.12 2.63 3.00 -51.93 -0.16 2.47 16 4 O -0.55 -10.82 13.30 -35.23 -0.47 -11.29 16 5 C 0.08 1.38 2.98 -3.82 -0.01 1.37 16 6 N -0.50 -9.49 3.91 -226.66 -0.89 -10.38 16 7 C 0.10 2.06 4.28 -3.83 -0.02 2.04 16 8 C 0.03 0.69 1.34 -155.66 -0.21 0.48 16 9 C -0.43 -11.34 8.01 -34.44 -0.28 -11.61 16 10 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 11 C 0.05 1.30 5.28 -17.82 -0.09 1.21 16 12 N -0.89 -24.17 8.59 55.43 0.48 -23.69 16 13 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 C -0.19 -4.71 9.39 -26.74 -0.25 -4.96 16 18 C -0.19 -4.58 6.56 -26.74 -0.18 -4.75 16 19 C 0.09 1.39 2.15 -67.72 -0.15 1.24 16 20 C -0.15 -2.12 4.67 -26.73 -0.12 -2.24 16 21 C -0.11 -1.31 5.92 -26.73 -0.16 -1.47 16 22 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 23 C -0.12 -1.41 5.93 -26.71 -0.16 -1.57 16 24 C -0.10 -1.56 5.21 -26.71 -0.14 -1.69 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.36 6.02 9.03 45.56 0.41 6.43 16 29 H 0.04 0.68 7.49 -51.93 -0.39 0.29 16 30 H 0.06 1.03 5.26 -51.93 -0.27 0.75 16 31 H 0.01 0.21 7.01 -51.92 -0.36 -0.15 16 32 H 0.06 1.21 7.73 -51.93 -0.40 0.81 16 33 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 34 H 0.11 2.85 6.48 -51.93 -0.34 2.51 16 35 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.12 3.04 5.84 -51.93 -0.30 2.74 16 38 H 0.07 1.23 7.80 -51.92 -0.40 0.82 16 39 H 0.06 0.86 6.61 -51.93 -0.34 0.51 16 40 H 0.06 0.85 7.20 -51.93 -0.37 0.47 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 48 H 0.06 0.94 6.38 -51.93 -0.33 0.61 16 LS Contribution 350.72 15.07 5.29 5.29 Total: -1.00 -27.30 350.72 -10.15 -37.45 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -7.88 Total: 10.83 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: -1.65 Total: -24.48 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: -0.41 Total: -34.07 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -0.47 Total: -11.29 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.30 -10.15 -37.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602773973.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.330 kcal (2) G-P(sol) polarization free energy of solvation -27.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds