Wall clock time and date at job start Tue Mar 31 2020 06:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47322 * 2 1 4 4 O 1.42900 * 109.47001 * 240.00147 * 2 1 3 5 5 C 1.52997 * 109.46975 * 119.99883 * 2 1 3 6 6 N 1.46911 * 109.46951 * 180.90526 * 5 2 1 7 7 C 1.46899 * 110.99656 * 65.92345 * 6 5 2 8 8 C 1.53001 * 109.46980 * 207.17075 * 7 6 5 9 9 C 1.50694 * 115.54956 * 28.84885 * 8 7 6 10 10 H 1.08002 * 120.00007 * 267.45123 * 9 8 7 11 11 C 1.37873 * 120.00225 * 87.44935 * 9 8 7 12 12 N 1.31513 * 120.00416 * 180.61250 * 11 9 8 13 13 Si 1.86805 * 119.99689 * 0.61582 * 11 9 8 14 14 H 1.48498 * 109.47286 * 92.32602 * 13 11 9 15 15 H 1.48502 * 109.46790 * 212.32484 * 13 11 9 16 16 H 1.48493 * 109.47278 * 332.32128 * 13 11 9 17 17 C 1.53003 * 117.49433 * 243.13745 * 8 7 6 18 18 C 1.53002 * 117.49575 * 174.51737 * 8 7 6 19 19 C 1.46895 * 110.99831 * 189.87949 * 6 5 2 20 20 C 1.52994 * 109.47428 * 46.70790 * 19 6 5 21 21 C 1.53002 * 109.47324 * 179.97438 * 20 19 6 22 22 C 1.52998 * 109.47083 * 300.00151 * 21 20 19 23 23 C 1.52999 * 109.47457 * 59.99617 * 22 21 20 24 24 C 1.52998 * 109.46923 * 166.70907 * 19 6 5 25 25 H 1.09001 * 109.46873 * 300.00202 * 1 2 3 26 26 H 1.08993 * 109.47118 * 60.00039 * 1 2 3 27 27 H 1.08997 * 109.47093 * 180.02562 * 1 2 3 28 28 H 0.96700 * 113.99932 * 299.99835 * 4 2 1 29 29 H 1.08995 * 109.47390 * 60.91179 * 5 2 1 30 30 H 1.08996 * 109.47621 * 300.90284 * 5 2 1 31 31 H 1.08999 * 109.47165 * 327.17438 * 7 6 5 32 32 H 1.09006 * 109.47135 * 87.17443 * 7 6 5 33 33 H 0.96997 * 120.00531 * 180.02562 * 12 11 9 34 34 H 1.08995 * 117.50287 * 0.02562 * 17 8 7 35 35 H 1.09007 * 117.49125 * 145.02519 * 17 8 7 36 36 H 1.08997 * 117.49493 * 214.97542 * 18 8 7 37 37 H 1.08998 * 117.50263 * 359.97438 * 18 8 7 38 38 H 1.09006 * 109.47269 * 286.70817 * 19 6 5 39 39 H 1.09006 * 109.46873 * 59.99785 * 20 19 6 40 40 H 1.08998 * 109.47150 * 300.00179 * 20 19 6 41 41 H 1.09000 * 109.47319 * 180.02562 * 21 20 19 42 42 H 1.08994 * 109.46934 * 59.99819 * 21 20 19 43 43 H 1.09000 * 109.47593 * 180.02562 * 22 21 20 44 44 H 1.09006 * 109.47075 * 300.00059 * 22 21 20 45 45 H 1.09006 * 109.46617 * 60.00162 * 23 22 21 46 46 H 1.08998 * 109.47443 * 179.97438 * 23 22 21 47 47 H 1.08999 * 109.47385 * 299.99827 * 24 19 6 48 48 H 1.09006 * 109.47190 * 59.99776 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 7 3.5090 -0.7023 1.2602 7 6 4.0166 0.6677 1.4128 8 6 5.4010 0.7731 0.7701 9 6 5.6560 -0.1647 -0.3816 10 1 6.1111 -1.1278 -0.2032 11 6 5.3085 0.2067 -1.6631 12 7 5.5199 -0.6166 -2.6666 13 14 4.5372 1.8795 -1.9739 14 1 5.6017 2.8631 -2.2968 15 1 3.5897 1.7835 -3.1134 16 1 3.8069 2.3213 -0.7589 17 6 6.5811 1.1064 1.6851 18 6 6.0483 2.1582 0.7100 19 6 4.0388 -1.5803 2.3120 20 6 3.3159 -2.9278 2.2637 21 6 3.8682 -3.8425 3.3588 22 6 5.3661 -4.0591 3.1348 23 6 6.0892 -2.7116 3.1830 24 6 5.5368 -1.7970 2.0886 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.7210 -1.5952 -1.2329 29 1 1.6901 -1.7534 1.2412 30 1 1.6636 -0.2169 2.1392 31 1 3.3351 1.3642 0.9242 32 1 4.0884 0.9127 2.4725 33 1 5.2758 -0.3552 -3.5682 34 1 6.3713 1.2501 2.7450 35 1 7.5423 0.6471 1.4542 36 1 6.6590 2.3908 -0.1624 37 1 5.4878 2.9943 1.1279 38 1 3.8800 -1.1174 3.2860 39 1 3.4747 -3.3907 1.2897 40 1 2.2487 -2.7734 2.4228 41 1 3.3535 -4.8027 3.3241 42 1 3.7097 -3.3798 4.3328 43 1 5.7597 -4.7111 3.9146 44 1 5.5247 -4.5218 2.1606 45 1 5.9307 -2.2489 4.1571 46 1 7.1564 -2.8660 3.0238 47 1 5.6958 -2.2599 1.1146 48 1 6.0520 -0.8369 2.1230 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602773974.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:37 Heat of formation + Delta-G solvation = -18.105437 kcal Electronic energy + Delta-G solvation = -25070.541201 eV Core-core repulsion = 21933.347886 eV Total energy + Delta-G solvation = -3137.193315 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.29857 -37.02306 -36.63563 -34.30674 -31.67007 -30.83401 -30.32392 -28.90473 -26.74903 -25.17299 -23.80533 -22.35572 -21.51808 -20.97259 -20.30168 -19.15047 -18.63547 -16.10847 -15.79749 -15.71625 -15.12299 -14.57754 -14.32329 -13.97044 -13.85191 -13.61028 -13.49686 -13.37067 -12.80758 -12.49006 -12.29228 -12.14979 -12.06192 -11.67885 -11.41875 -11.26049 -11.21473 -10.91901 -10.79577 -10.63438 -10.40459 -10.30468 -10.11481 -9.93856 -9.85415 -9.73499 -9.41568 -9.26190 -9.19452 -8.77384 -8.16073 -8.09262 -7.24413 -5.70908 -3.66153 3.53932 3.63588 3.66180 4.39500 4.78786 4.98591 5.03762 5.08614 5.14517 5.23782 5.32134 5.50995 5.57107 5.60274 5.65988 5.68654 5.76922 5.83435 5.89201 5.94672 5.95579 5.99715 6.04878 6.06952 6.08065 6.16621 6.23761 6.29436 6.33751 6.35865 6.49014 6.51346 6.57182 6.59293 6.65359 6.69259 6.77391 6.82131 7.12595 7.19279 7.24062 7.42099 7.94483 8.00379 8.18825 8.44574 8.87847 9.31335 9.96686 11.42178 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014063 B = 0.008970 C = 0.006868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.595269 B = 3120.892955 C = 4075.666786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.103 3.897 3 H 0.090 0.910 4 O -0.524 6.524 5 C 0.020 3.980 6 N -0.483 5.483 7 C 0.088 3.912 8 C 0.023 3.977 9 C -0.444 4.444 10 H 0.082 0.918 11 C 0.095 3.905 12 N -0.904 5.904 13 Si 0.887 3.113 14 H -0.298 1.298 15 H -0.301 1.301 16 H -0.269 1.269 17 C -0.191 4.191 18 C -0.209 4.209 19 C 0.102 3.898 20 C -0.118 4.118 21 C -0.114 4.114 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.123 4.123 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.363 0.637 29 H 0.078 0.922 30 H 0.020 0.980 31 H 0.062 0.938 32 H 0.009 0.991 33 H 0.256 0.744 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.018 0.982 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.063 0.937 45 H 0.047 0.953 46 H 0.057 0.943 47 H 0.086 0.914 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.863 -2.881 11.069 13.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.043 3.957 3 H 0.108 0.892 4 O -0.326 6.326 5 C -0.109 4.109 6 N -0.205 5.205 7 C -0.040 4.040 8 C 0.021 3.979 9 C -0.481 4.481 10 H 0.100 0.900 11 C -0.106 4.106 12 N -0.543 5.543 13 Si 0.718 3.282 14 H -0.226 1.226 15 H -0.228 1.228 16 H -0.194 1.194 17 C -0.228 4.228 18 C -0.247 4.247 19 C -0.006 4.006 20 C -0.156 4.156 21 C -0.152 4.152 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.160 4.160 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.208 0.792 29 H 0.096 0.904 30 H 0.039 0.961 31 H 0.080 0.920 32 H 0.027 0.973 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.035 0.965 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.104 0.896 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.455 -2.502 10.304 12.414 hybrid contribution -1.163 0.903 0.764 1.659 sum -7.618 -1.598 11.068 13.531 Atomic orbital electron populations 1.22530 0.97665 1.01979 1.02002 1.21889 0.90751 0.97234 0.85849 0.89188 1.86830 1.76820 1.27559 1.41430 1.22939 0.90681 1.00710 0.96578 1.61722 1.03908 1.08951 1.45915 1.21939 0.97905 0.88769 0.95364 1.19513 0.88072 0.93200 0.97068 1.20029 1.38991 1.01552 0.87552 0.90044 1.24640 0.94030 0.95915 0.95981 1.69851 1.49128 1.35916 0.99396 0.86825 0.78709 0.85377 0.77270 1.22617 1.22820 1.19421 1.22920 1.00805 1.04986 0.94085 1.23045 1.06279 0.93692 1.01654 1.21497 0.96133 0.92050 0.90954 1.21762 0.98298 0.95837 0.99659 1.21486 0.96193 0.98914 0.98588 1.21536 0.95092 0.97614 1.01343 1.21585 0.99269 0.95602 0.99279 1.22033 0.93806 1.01420 0.98784 0.92418 0.92079 0.92574 0.79192 0.90394 0.96147 0.92032 0.97263 0.93417 0.91597 0.89640 0.89624 0.91631 0.96468 0.90704 0.92787 0.92652 0.92845 0.93127 0.91826 0.93393 0.92440 0.89595 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 9.53 37.16 0.35 -2.04 16 2 C 0.10 1.75 3.52 -26.73 -0.09 1.66 16 3 H 0.09 1.75 6.20 -51.93 -0.32 1.43 16 4 O -0.52 -10.48 13.22 -35.23 -0.47 -10.94 16 5 C 0.02 0.32 4.13 -3.82 -0.02 0.30 16 6 N -0.48 -9.22 3.37 -226.65 -0.76 -9.98 16 7 C 0.09 1.81 4.73 -3.82 -0.02 1.79 16 8 C 0.02 0.52 0.04 -155.66 -0.01 0.51 16 9 C -0.44 -11.80 7.59 -34.44 -0.26 -12.06 16 10 H 0.08 2.36 5.82 -52.49 -0.31 2.05 16 11 C 0.10 2.71 5.47 -17.82 -0.10 2.62 16 12 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 13 Si 0.89 23.25 25.15 -169.99 -4.28 18.97 16 14 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 15 H -0.30 -8.22 7.11 56.52 0.40 -7.82 16 16 H -0.27 -6.66 5.30 56.52 0.30 -6.36 16 17 C -0.19 -3.84 7.47 -26.73 -0.20 -4.04 16 18 C -0.21 -4.54 7.47 -26.73 -0.20 -4.74 16 19 C 0.10 1.75 1.96 -67.72 -0.13 1.61 16 20 C -0.12 -1.74 4.51 -26.73 -0.12 -1.86 16 21 C -0.11 -1.46 5.92 -26.73 -0.16 -1.61 16 22 C -0.12 -1.58 5.92 -26.73 -0.16 -1.74 16 23 C -0.12 -1.78 5.92 -26.76 -0.16 -1.94 16 24 C -0.12 -2.24 3.74 -26.76 -0.10 -2.34 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.36 5.94 9.05 45.56 0.41 6.36 16 29 H 0.08 1.14 5.56 -51.93 -0.29 0.85 16 30 H 0.02 0.31 8.12 -51.93 -0.42 -0.11 16 31 H 0.06 1.32 4.33 -51.93 -0.22 1.09 16 32 H 0.01 0.18 7.41 -51.93 -0.38 -0.20 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 34 H 0.07 1.19 8.03 -51.93 -0.42 0.78 16 35 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 36 H 0.09 1.98 7.10 -51.93 -0.37 1.61 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.02 0.30 7.82 -51.93 -0.41 -0.11 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.05 0.73 6.12 -51.93 -0.32 0.41 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.09 1.85 6.34 -51.93 -0.33 1.52 16 48 H 0.09 1.81 3.55 -51.93 -0.18 1.63 16 LS Contribution 344.61 15.07 5.19 5.19 Total: -1.00 -30.20 344.61 -8.77 -38.98 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -7.87 Total: 8.57 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -1.37 Total: -23.89 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.01 Total: -36.89 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -0.47 Total: -10.94 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -4.28 Total: 18.97 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.20 -8.77 -38.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602773974.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.873 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds