Wall clock time and date at job start Tue Mar 31 2020 05:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46984 * 2 1 4 4 O 1.42893 * 109.47094 * 180.02562 * 3 2 1 5 5 C 1.42900 * 113.99874 * 180.02562 * 4 3 2 6 6 H 1.08999 * 108.64431 * 331.75260 * 5 4 3 7 7 C 1.50469 * 108.76822 * 90.00194 * 5 4 3 8 8 C 1.54514 * 108.84905 * 213.06991 * 7 5 4 9 9 C 1.45869 * 111.59055 * 282.80472 * 8 7 5 10 10 N 1.47795 * 112.91354 * 61.33042 * 9 8 7 11 11 C 1.46908 * 110.99844 * 153.86608 * 10 9 8 12 12 C 1.53004 * 109.47087 * 68.70001 * 11 10 9 13 13 C 1.50694 * 115.54725 * 294.36850 * 12 11 10 14 14 H 1.08003 * 120.00190 * 144.26688 * 13 12 11 15 15 C 1.37883 * 120.00457 * 324.25842 * 13 12 11 16 16 N 1.31512 * 119.99445 * 348.87933 * 15 13 12 17 17 Si 1.86796 * 120.00219 * 168.87731 * 15 13 12 18 18 H 1.48497 * 109.47183 * 90.00382 * 17 15 13 19 19 H 1.48505 * 109.47020 * 210.00325 * 17 15 13 20 20 H 1.48503 * 109.47285 * 329.99901 * 17 15 13 21 21 C 1.52992 * 117.49985 * 148.69416 * 12 11 10 22 22 C 1.52996 * 117.49579 * 80.03731 * 12 11 10 23 23 C 1.44270 * 109.46534 * 276.73515 * 10 9 8 24 24 C 1.54069 * 111.98133 * 96.44227 * 23 10 9 25 25 H 1.08996 * 109.47248 * 60.00070 * 1 2 3 26 26 H 1.09000 * 109.46774 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47041 * 299.99379 * 1 2 3 28 28 H 1.09005 * 109.46919 * 240.00315 * 2 1 3 29 29 H 1.08996 * 109.47248 * 119.99930 * 2 1 3 30 30 H 1.09005 * 109.46950 * 59.99836 * 3 2 1 31 31 H 1.08998 * 109.46951 * 300.00810 * 3 2 1 32 32 H 1.08998 * 109.57481 * 93.26323 * 7 5 4 33 33 H 1.09000 * 109.57265 * 332.87840 * 7 5 4 34 34 H 1.08999 * 109.05192 * 162.26597 * 8 7 5 35 35 H 1.08992 * 108.99790 * 43.31570 * 8 7 5 36 36 H 1.08992 * 108.79460 * 300.44301 * 9 8 7 37 37 H 1.09001 * 108.70096 * 182.15517 * 9 8 7 38 38 H 1.09003 * 109.46766 * 308.70277 * 11 10 9 39 39 H 1.08993 * 109.46950 * 188.70432 * 11 10 9 40 40 H 0.97000 * 119.99927 * 185.04566 * 16 15 13 41 41 H 1.09009 * 117.49976 * 0.02562 * 21 12 11 42 42 H 1.08997 * 117.50171 * 145.01786 * 21 12 11 43 43 H 1.09005 * 117.49645 * 214.97764 * 22 12 11 44 44 H 1.08995 * 117.50244 * 359.97094 * 22 12 11 45 45 H 1.08997 * 108.98016 * 217.08526 * 23 10 9 46 46 H 1.08993 * 108.97810 * 335.79827 * 23 10 9 47 47 H 1.08997 * 108.91965 * 198.19366 * 24 23 10 48 48 H 1.08997 * 108.85091 * 79.58356 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0501 2.7480 -0.0001 6 1 3.3605 3.4367 -0.4882 7 6 4.2477 3.1895 1.4248 8 6 4.0560 4.7206 1.5042 9 6 5.2253 5.4346 1.0036 10 7 5.5117 5.1450 -0.4171 11 6 6.2318 6.2600 -1.0469 12 6 7.6427 6.3510 -0.4621 13 6 7.7188 6.7153 0.9981 14 1 8.4827 6.2788 1.6245 15 6 6.8132 7.6059 1.5347 16 7 6.0273 8.3019 0.7426 17 14 6.7026 7.8237 3.3866 18 1 7.6351 8.8969 3.8154 19 1 5.3142 8.1964 3.7592 20 1 7.0704 6.5510 4.0577 21 6 8.7549 6.8663 -1.3777 22 6 8.6960 5.3830 -1.0046 23 6 6.2679 3.9203 -0.5151 24 6 5.3646 2.7067 -0.8070 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 5.2548 2.9302 1.7511 33 1 3.5160 2.6961 2.0647 34 1 3.8833 5.0042 2.5424 35 1 3.1864 5.0006 0.9097 36 1 6.0918 5.1520 1.6013 37 1 5.0557 6.5054 1.1165 38 1 5.6984 7.1912 -0.8555 39 1 6.2941 6.0912 -2.1218 40 1 5.4424 8.9806 1.1141 41 1 8.4814 7.1409 -2.3965 42 1 9.5419 7.4685 -0.9238 43 1 9.4443 5.0099 -0.3054 44 1 8.3837 4.6810 -1.7777 45 1 6.9995 4.0186 -1.3170 46 1 6.7943 3.7525 0.4244 47 1 5.9056 1.7947 -0.5547 48 1 5.1260 2.6929 -1.8704 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602774807.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:16 Heat of formation + Delta-G solvation = -15.277246 kcal Electronic energy + Delta-G solvation = -24125.237994 eV Core-core repulsion = 20988.167319 eV Total energy + Delta-G solvation = -3137.070675 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.30335 -37.84497 -35.68811 -33.77565 -32.72486 -32.11007 -30.95199 -26.88193 -25.96884 -25.73515 -23.97922 -23.18922 -21.55523 -21.21753 -19.87989 -19.33729 -18.74749 -16.56034 -16.13161 -15.83759 -15.19315 -14.96978 -14.52528 -13.99118 -13.89561 -13.82336 -13.48024 -13.15594 -12.81841 -12.62503 -12.36597 -12.16277 -12.02647 -11.72527 -11.44381 -11.23340 -11.09373 -11.02539 -10.91546 -10.68007 -10.54099 -10.42325 -10.23759 -10.04869 -9.93249 -9.83521 -9.54443 -9.52110 -9.13973 -8.94583 -8.74274 -7.96181 -7.08214 -6.11922 -4.15326 3.17202 3.26421 3.30364 3.87074 4.24766 4.80953 4.89658 4.96704 5.06651 5.21513 5.35552 5.41250 5.48733 5.51580 5.53240 5.67603 5.72444 5.82514 5.84382 5.90456 6.01895 6.05794 6.06710 6.09610 6.21990 6.31169 6.35013 6.44048 6.50930 6.57961 6.64167 6.66164 6.68702 6.75188 6.89592 6.92609 6.97427 7.15026 7.27498 7.42300 7.50904 7.57212 7.61449 7.95217 8.25941 8.33036 8.53889 8.78060 9.39267 10.83562 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021014 B = 0.005072 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.133728 B = 5518.837403 C = 6363.498281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.063 3.937 4 O -0.396 6.396 5 C 0.105 3.895 6 H 0.061 0.939 7 C -0.135 4.135 8 C -0.111 4.111 9 C 0.033 3.967 10 N -0.515 5.515 11 C 0.080 3.920 12 C 0.026 3.974 13 C -0.481 4.481 14 H 0.057 0.943 15 C 0.077 3.923 16 N -0.875 5.875 17 Si 0.878 3.122 18 H -0.280 1.280 19 H -0.280 1.280 20 H -0.270 1.270 21 C -0.203 4.203 22 C -0.215 4.215 23 C 0.051 3.949 24 C -0.103 4.103 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.105 0.895 38 H 0.129 0.871 39 H 0.030 0.970 40 H 0.264 0.736 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.040 0.960 47 H 0.059 0.941 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.716 -10.206 -1.179 12.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.014 4.014 4 O -0.316 6.316 5 C 0.048 3.952 6 H 0.079 0.921 7 C -0.173 4.173 8 C -0.149 4.149 9 C -0.094 4.094 10 N -0.237 5.237 11 C -0.047 4.047 12 C 0.024 3.976 13 C -0.518 4.518 14 H 0.075 0.925 15 C -0.124 4.124 16 N -0.514 5.514 17 Si 0.705 3.295 18 H -0.205 1.205 19 H -0.205 1.205 20 H -0.195 1.195 21 C -0.242 4.242 22 C -0.252 4.252 23 C -0.078 4.078 24 C -0.142 4.142 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.123 0.877 38 H 0.147 0.853 39 H 0.049 0.951 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.058 0.942 47 H 0.078 0.922 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.275 -10.323 -1.411 13.305 hybrid contribution 0.808 0.464 1.380 1.665 sum -7.467 -9.859 -0.031 12.368 Atomic orbital electron populations 1.21697 0.95145 1.01859 1.02000 1.21457 0.95381 0.96219 1.02984 1.22476 0.82171 0.96932 0.99818 1.87858 1.18591 1.29913 1.95243 1.21885 0.95376 0.82639 0.95286 0.92058 1.21891 1.02030 0.96794 0.96575 1.20709 1.00419 0.93873 0.99916 1.21480 0.96121 1.03283 0.88557 1.61848 1.43867 1.02308 1.15660 1.22143 0.93121 0.96078 0.93370 1.19785 0.88544 0.95440 0.93792 1.20515 1.13611 1.25643 0.91997 0.92495 1.24881 0.94753 0.95119 0.97613 1.69722 1.25776 1.21793 1.34113 0.86803 0.77833 0.78840 0.86018 1.20549 1.20522 1.19475 1.22912 1.06253 0.95262 0.99741 1.23045 1.06241 0.92209 1.03690 1.22035 0.94272 0.90173 1.01360 1.22040 0.94779 0.98457 0.98902 0.92587 0.92326 0.92603 0.91391 0.91420 0.93773 0.93763 0.91642 0.92551 0.92847 0.92606 0.93135 0.87684 0.85321 0.95139 0.92501 0.91768 0.90798 0.91066 0.91039 0.91075 0.94165 0.92228 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.12 -1.29 6.30 -26.73 -0.17 -1.46 16 3 C 0.06 0.81 5.62 37.16 0.21 1.01 16 4 O -0.40 -6.25 9.84 -35.23 -0.35 -6.59 16 5 C 0.11 1.74 2.25 -27.32 -0.06 1.67 16 6 H 0.06 1.06 6.95 -51.93 -0.36 0.69 16 7 C -0.14 -2.27 5.27 -27.20 -0.14 -2.41 16 8 C -0.11 -2.02 5.53 -29.31 -0.16 -2.19 16 9 C 0.03 0.71 2.95 -6.71 -0.02 0.69 16 10 N -0.52 -10.71 4.45 -239.56 -1.07 -11.78 16 11 C 0.08 1.82 5.04 -3.82 -0.02 1.80 16 12 C 0.03 0.61 1.43 -155.67 -0.22 0.39 16 13 C -0.48 -12.26 6.93 -34.44 -0.24 -12.49 16 14 H 0.06 1.50 7.84 -52.48 -0.41 1.09 16 15 C 0.08 1.93 2.80 -17.82 -0.05 1.88 16 16 N -0.88 -22.33 9.33 55.43 0.52 -21.82 16 17 Si 0.88 19.81 29.13 -169.99 -4.95 14.86 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 C -0.20 -4.53 9.92 -26.70 -0.26 -4.79 16 22 C -0.21 -4.55 8.41 -26.70 -0.22 -4.77 16 23 C 0.05 0.98 3.80 -4.67 -0.02 0.96 16 24 C -0.10 -1.74 5.78 -25.49 -0.15 -1.89 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.55 7.81 -51.93 -0.41 0.15 16 31 H 0.04 0.55 8.07 -51.93 -0.42 0.13 16 32 H 0.06 1.16 7.15 -51.93 -0.37 0.79 16 33 H 0.06 0.87 7.57 -51.93 -0.39 0.48 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 1.00 7.58 -51.93 -0.39 0.60 16 36 H 0.05 1.17 5.52 -51.93 -0.29 0.89 16 37 H 0.11 2.48 4.17 -51.93 -0.22 2.27 16 38 H 0.13 3.24 5.24 -51.93 -0.27 2.97 16 39 H 0.03 0.66 8.09 -51.93 -0.42 0.24 16 40 H 0.26 6.50 8.32 -40.82 -0.34 6.16 16 41 H 0.06 1.35 8.14 -51.92 -0.42 0.93 16 42 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 43 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.07 1.40 6.21 -51.93 -0.32 1.08 16 45 H 0.07 1.37 4.43 -51.93 -0.23 1.14 16 46 H 0.04 0.83 6.51 -51.93 -0.34 0.49 16 47 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 48 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 347.03 15.07 5.23 5.23 Total: -1.00 -25.02 347.03 -10.41 -35.42 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -8.63 Total: 7.16 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -1.16 Total: -22.49 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: -0.55 Total: -33.59 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -0.35 Total: -6.59 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.95 Total: 14.86 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -25.02 -10.41 -35.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602774807.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.144 kcal (2) G-P(sol) polarization free energy of solvation -25.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds