Wall clock time and date at job start Tue Mar 31 2020 05:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46822 * 2 1 4 4 O 1.42902 * 109.47195 * 180.02562 * 3 2 1 5 5 C 1.42896 * 114.00210 * 179.97438 * 4 3 2 6 6 H 1.09000 * 108.82895 * 31.49876 * 5 4 3 7 7 C 1.54166 * 108.85597 * 273.09015 * 5 4 3 8 8 C 1.53827 * 111.96982 * 197.68284 * 7 5 4 9 9 C 1.50816 * 111.61980 * 319.03824 * 8 7 5 10 10 N 1.47635 * 108.05257 * 95.05949 * 9 8 7 11 11 C 1.46894 * 111.00346 * 150.34429 * 10 9 8 12 12 C 1.53004 * 109.47476 * 292.39983 * 11 10 9 13 13 C 1.50701 * 115.54577 * 305.94149 * 12 11 10 14 14 H 1.08002 * 120.00369 * 99.35989 * 13 12 11 15 15 C 1.37885 * 119.99857 * 279.35648 * 13 12 11 16 16 N 1.31514 * 119.99490 * 6.46895 * 15 13 12 17 17 Si 1.86800 * 120.00041 * 186.46557 * 15 13 12 18 18 H 1.48496 * 109.46922 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.47111 * 300.00346 * 17 15 13 20 20 H 1.48501 * 109.47035 * 60.00259 * 17 15 13 21 21 C 1.52995 * 117.51751 * 91.63768 * 12 11 10 22 22 C 1.52994 * 117.50222 * 160.26819 * 12 11 10 23 23 C 1.39781 * 114.76035 * 277.19915 * 10 9 8 24 24 C 1.50749 * 108.85641 * 149.99898 * 5 4 3 25 25 H 1.08999 * 109.46974 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47104 * 299.99594 * 1 2 3 27 27 H 1.08994 * 109.47580 * 60.00164 * 1 2 3 28 28 H 1.08997 * 109.46968 * 240.00368 * 2 1 3 29 29 H 1.08997 * 109.46850 * 119.99857 * 2 1 3 30 30 H 1.09005 * 109.47174 * 59.99810 * 3 2 1 31 31 H 1.09004 * 109.47446 * 300.00248 * 3 2 1 32 32 H 1.08995 * 108.98445 * 318.31996 * 7 5 4 33 33 H 1.09001 * 108.98554 * 77.04318 * 7 5 4 34 34 H 1.08997 * 109.05129 * 79.59157 * 8 7 5 35 35 H 1.08999 * 109.05208 * 198.49466 * 8 7 5 36 36 H 1.09004 * 109.75052 * 335.42186 * 9 8 7 37 37 H 1.09000 * 109.74731 * 214.69014 * 9 8 7 38 38 H 1.09002 * 109.47189 * 172.39685 * 11 10 9 39 39 H 1.08998 * 109.47198 * 52.39815 * 11 10 9 40 40 H 0.96998 * 120.00576 * 354.96303 * 16 15 13 41 41 H 1.09004 * 117.49845 * 214.97614 * 21 12 11 42 42 H 1.08996 * 117.49875 * 359.97438 * 21 12 11 43 43 H 1.09003 * 117.49640 * 359.97438 * 22 12 11 44 44 H 1.08996 * 117.49840 * 144.97649 * 22 12 11 45 45 H 1.08998 * 109.02580 * 182.86309 * 23 10 9 46 46 H 1.08998 * 109.01689 * 301.68554 * 23 10 9 47 47 H 1.08998 * 109.54405 * 93.96073 * 24 5 4 48 48 H 1.08996 * 109.54651 * 333.69523 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0501 2.7480 -0.0012 6 1 3.3898 3.4273 0.5379 7 6 4.1803 3.2348 -1.4582 8 6 5.1691 4.4060 -1.5876 9 6 5.0176 5.3889 -0.4538 10 7 6.0054 5.0424 0.5872 11 6 6.4257 6.2365 1.3325 12 6 7.2270 7.1576 0.4103 13 6 8.4016 6.5190 -0.2851 14 1 8.3088 6.1891 -1.3093 15 6 9.5949 6.3560 0.3862 16 7 9.6721 6.6393 1.6681 17 14 11.1017 5.7326 -0.5251 18 1 12.2482 5.6466 0.4148 19 1 10.8192 4.3872 -1.0865 20 1 11.4357 6.6691 -1.6281 21 6 6.4575 8.2386 -0.3513 22 6 7.3616 8.6252 0.8209 23 6 5.6062 4.0237 1.4572 24 6 5.3772 2.6909 0.7115 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.6765 1.9564 -0.8900 32 1 4.5268 2.4083 -2.0786 33 1 3.2013 3.5565 -1.8135 34 1 6.1864 4.0147 -1.5856 35 1 4.9892 4.9210 -2.5312 36 1 4.0104 5.3238 -0.0419 37 1 5.2035 6.4001 -0.8157 38 1 7.0471 5.9378 2.1768 39 1 5.5455 6.7650 1.6983 40 1 8.9116 7.0315 2.1249 41 1 6.8009 8.4881 -1.3553 42 1 5.3801 8.2936 -0.1957 43 1 6.8789 8.9347 1.7479 44 1 8.2999 9.1288 0.5884 45 1 6.3778 3.8797 2.2135 46 1 4.6795 4.3194 1.9489 47 1 6.1751 2.5378 -0.0151 48 1 5.3716 1.8689 1.4273 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602774809.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:20 Heat of formation + Delta-G solvation = -33.593196 kcal Electronic energy + Delta-G solvation = -23507.207182 eV Core-core repulsion = 20369.342268 eV Total energy + Delta-G solvation = -3137.864914 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -39.55684 -37.89457 -36.23595 -34.08756 -32.78373 -31.78347 -31.18441 -27.13730 -26.25606 -24.95949 -24.31806 -23.65297 -21.74920 -21.30218 -20.30528 -19.39122 -19.14548 -16.87385 -16.42744 -16.01862 -15.47750 -15.03147 -14.73867 -14.35985 -14.02000 -13.63911 -13.49994 -13.42237 -12.97862 -12.84891 -12.51911 -12.46655 -12.17647 -11.87852 -11.67911 -11.45736 -11.33724 -11.10571 -10.96969 -10.75206 -10.67923 -10.66103 -10.51151 -10.34232 -10.20093 -10.02477 -9.97324 -9.42871 -9.31548 -8.41466 -8.34448 -8.16419 -7.31605 -6.18346 -3.87096 3.51980 3.53713 3.63874 3.71605 4.50516 4.64185 4.74252 4.80743 4.99744 5.00829 5.10278 5.18533 5.28517 5.28730 5.31273 5.45849 5.48658 5.50557 5.57615 5.66742 5.72200 5.80733 5.90419 5.91620 5.95054 5.98717 6.04994 6.08958 6.16882 6.19800 6.28348 6.34430 6.38445 6.47847 6.51442 6.57608 6.67867 6.80513 6.86079 6.90527 7.27682 7.32805 7.36395 7.93549 8.24046 8.44559 8.59493 9.04502 9.83200 11.21268 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024105 B = 0.004072 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.310580 B = 6874.070775 C = 7298.645134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.061 3.939 4 O -0.387 6.387 5 C 0.096 3.904 6 H 0.049 0.951 7 C -0.136 4.136 8 C -0.112 4.112 9 C 0.066 3.934 10 N -0.528 5.528 11 C 0.105 3.895 12 C 0.037 3.963 13 C -0.537 4.537 14 H 0.050 0.950 15 C 0.025 3.975 16 N -0.915 5.915 17 Si 1.064 2.936 18 H -0.286 1.286 19 H -0.289 1.289 20 H -0.292 1.292 21 C -0.202 4.202 22 C -0.186 4.186 23 C 0.086 3.914 24 C -0.115 4.115 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.020 0.980 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.000 1.000 40 H 0.271 0.729 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.002 0.998 47 H 0.085 0.915 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.203 -8.264 -2.804 17.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.016 4.016 4 O -0.307 6.307 5 C 0.039 3.961 6 H 0.068 0.932 7 C -0.174 4.174 8 C -0.150 4.150 9 C -0.061 4.061 10 N -0.251 5.251 11 C -0.022 4.022 12 C 0.036 3.964 13 C -0.575 4.575 14 H 0.068 0.932 15 C -0.179 4.179 16 N -0.551 5.551 17 Si 0.893 3.107 18 H -0.211 1.211 19 H -0.215 1.215 20 H -0.218 1.218 21 C -0.239 4.239 22 C -0.224 4.224 23 C -0.045 4.045 24 C -0.153 4.153 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.038 0.962 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.018 0.982 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.101 0.899 45 H 0.091 0.909 46 H 0.020 0.980 47 H 0.103 0.897 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.135 -9.076 -2.815 16.211 hybrid contribution -2.597 1.077 0.185 2.817 sum -15.731 -7.999 -2.630 17.843 Atomic orbital electron populations 1.21700 0.95032 1.02040 1.01948 1.21457 0.95464 0.95944 1.03222 1.22520 0.81984 0.97348 0.99730 1.87937 1.18762 1.28845 1.95134 1.22094 0.95121 0.83285 0.95635 0.93248 1.22411 0.99493 0.99015 0.96460 1.21343 1.00650 0.95154 0.97878 1.21835 0.91589 1.00075 0.92619 1.58364 1.41204 1.08973 1.16509 1.21685 0.95134 0.89681 0.95739 1.19112 0.95834 0.85628 0.95783 1.21042 0.94678 1.42252 0.99572 0.93175 1.25607 1.00508 0.95752 0.96032 1.70741 1.35628 1.40169 1.08558 0.83616 0.75909 0.76221 0.74936 1.21149 1.21521 1.21836 1.22893 0.94986 1.09617 0.96439 1.22799 1.00217 1.02938 0.96425 1.20836 0.97916 0.91305 0.94408 1.21591 0.95985 0.97568 1.00150 0.92153 0.92619 0.92604 0.91226 0.91233 0.93811 0.93723 0.91476 0.93121 0.89630 0.92349 0.96215 0.89572 0.91265 0.98200 0.91818 0.90300 0.91905 0.91904 0.89895 0.90881 0.98040 0.89682 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.12 -1.15 6.30 -26.73 -0.17 -1.32 16 3 C 0.06 0.68 5.71 37.16 0.21 0.89 16 4 O -0.39 -5.47 9.84 -35.23 -0.35 -5.82 16 5 C 0.10 1.38 2.12 -27.25 -0.06 1.33 16 6 H 0.05 0.72 6.19 -51.93 -0.32 0.40 16 7 C -0.14 -1.90 5.40 -25.69 -0.14 -2.04 16 8 C -0.11 -1.79 5.41 -27.40 -0.15 -1.94 16 9 C 0.07 1.15 5.16 -4.52 -0.02 1.13 16 10 N -0.53 -10.43 3.59 -240.00 -0.86 -11.30 16 11 C 0.10 2.29 4.78 -3.83 -0.02 2.27 16 12 C 0.04 0.88 0.64 -155.66 -0.10 0.79 16 13 C -0.54 -14.47 8.48 -34.44 -0.29 -14.76 16 14 H 0.05 1.39 7.82 -52.49 -0.41 0.98 16 15 C 0.03 0.69 5.42 -17.82 -0.10 0.60 16 16 N -0.91 -26.74 13.61 55.43 0.75 -25.99 16 17 Si 1.06 25.22 29.91 -169.99 -5.08 20.14 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 C -0.20 -4.28 8.19 -26.74 -0.22 -4.50 16 22 C -0.19 -4.22 9.06 -26.74 -0.24 -4.46 16 23 C 0.09 1.50 4.92 -6.74 -0.03 1.47 16 24 C -0.11 -1.81 5.35 -27.11 -0.15 -1.96 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.04 0.47 8.07 -51.93 -0.42 0.05 16 31 H 0.04 0.47 8.06 -51.93 -0.42 0.06 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.64 8.12 -51.93 -0.42 0.22 16 34 H 0.09 1.57 7.26 -51.93 -0.38 1.19 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.02 0.32 6.66 -51.93 -0.35 -0.02 16 37 H 0.09 1.62 4.80 -51.93 -0.25 1.37 16 38 H 0.07 1.65 6.97 -51.93 -0.36 1.29 16 39 H 0.00 0.00 8.05 -51.93 -0.42 -0.42 16 40 H 0.27 7.82 5.96 -40.82 -0.24 7.58 16 41 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 42 H 0.06 1.20 7.56 -51.93 -0.39 0.81 16 43 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 44 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 45 H 0.07 1.34 7.72 -51.93 -0.40 0.94 16 46 H 0.00 0.03 7.54 -51.93 -0.39 -0.36 16 47 H 0.08 1.46 7.11 -51.93 -0.37 1.09 16 48 H 0.07 1.10 7.99 -51.93 -0.41 0.69 16 LS Contribution 362.44 15.07 5.46 5.46 Total: -1.00 -28.60 362.44 -10.16 -38.76 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -8.98 Total: 1.97 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: -1.10 Total: -23.23 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: -0.11 Total: -37.28 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.35 Total: -5.82 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.08 Total: 20.14 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.60 -10.16 -38.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602774809.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.169 kcal (2) G-P(sol) polarization free energy of solvation -28.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds