Wall clock time and date at job start Tue Mar 31 2020 05:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47509 * 2 1 4 4 O 1.42901 * 109.46958 * 180.02562 * 3 2 1 5 5 N 1.46899 * 109.47053 * 120.00266 * 2 1 3 6 6 C 1.46899 * 111.00188 * 299.99567 * 5 2 1 7 7 C 1.53003 * 109.47301 * 181.58899 * 6 5 2 8 8 C 1.50697 * 115.54893 * 65.05975 * 7 6 5 9 9 H 1.08003 * 119.99752 * 265.03057 * 8 7 6 10 10 C 1.37873 * 120.00340 * 85.03419 * 8 7 6 11 11 N 1.31515 * 119.99769 * 352.81139 * 10 8 7 12 12 Si 1.86797 * 120.00242 * 172.80827 * 10 8 7 13 13 H 1.48496 * 109.47154 * 90.00103 * 12 10 8 14 14 H 1.48500 * 109.47314 * 209.99935 * 12 10 8 15 15 H 1.48506 * 109.47080 * 330.00218 * 12 10 8 16 16 C 1.52999 * 117.49819 * 279.38454 * 7 6 5 17 17 C 1.53005 * 117.49719 * 210.72722 * 7 6 5 18 18 C 1.53003 * 109.46705 * 239.99632 * 2 1 3 19 19 C 1.53004 * 109.46751 * 65.00432 * 18 2 1 20 20 C 1.53003 * 109.46751 * 180.02562 * 19 18 2 21 21 C 1.52991 * 109.47372 * 59.99824 * 20 19 18 22 22 C 1.52994 * 109.47408 * 299.99794 * 21 20 19 23 23 C 1.52999 * 109.47202 * 305.00424 * 18 2 1 24 24 H 1.09000 * 109.47516 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46650 * 300.00172 * 1 2 3 26 26 H 1.08997 * 109.46789 * 59.99315 * 1 2 3 27 27 H 1.08995 * 109.46925 * 300.00077 * 3 2 1 28 28 H 1.08998 * 109.47109 * 60.00427 * 3 2 1 29 29 H 0.96701 * 113.99715 * 180.02562 * 4 3 2 30 30 H 1.00904 * 110.99995 * 63.94718 * 5 2 1 31 31 H 1.09000 * 109.46947 * 301.58841 * 6 5 2 32 32 H 1.09001 * 109.47042 * 61.58918 * 6 5 2 33 33 H 0.96999 * 120.00074 * 179.97438 * 11 10 8 34 34 H 1.09007 * 117.49763 * 0.02562 * 16 7 6 35 35 H 1.09000 * 117.49584 * 145.02054 * 16 7 6 36 36 H 1.08993 * 117.49786 * 214.97609 * 17 7 6 37 37 H 1.09001 * 117.49496 * 359.97438 * 17 7 6 38 38 H 1.08998 * 109.47163 * 185.00469 * 18 2 1 39 39 H 1.08998 * 109.47155 * 60.00128 * 19 18 2 40 40 H 1.08998 * 109.47317 * 299.99942 * 19 18 2 41 41 H 1.09004 * 109.46915 * 180.02562 * 20 19 18 42 42 H 1.09002 * 109.46707 * 299.99451 * 20 19 18 43 43 H 1.09006 * 109.47089 * 59.99891 * 21 20 19 44 44 H 1.08998 * 109.47073 * 179.97438 * 21 20 19 45 45 H 1.08994 * 109.47276 * 300.00394 * 22 21 20 46 46 H 1.08998 * 109.47237 * 179.97438 * 22 21 20 47 47 H 1.08994 * 109.47442 * 299.99880 * 23 18 2 48 48 H 1.08998 * 109.47025 * 59.99961 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4691 1.4422 -0.0006 5 7 2.0197 -0.6925 1.1994 6 6 1.5488 -0.0265 2.4211 7 6 2.1102 -0.7513 3.6460 8 6 3.6079 -0.6963 3.8039 9 1 4.2204 -1.5026 3.4282 10 6 4.1962 0.3832 4.4280 11 7 3.4691 1.4280 4.7587 12 14 6.0258 0.3619 4.8038 13 1 6.7737 0.9342 3.6556 14 1 6.2908 1.1715 6.0201 15 1 6.4675 -1.0371 5.0343 16 6 1.3983 -2.0273 4.0996 17 6 1.2646 -0.7426 4.9211 18 6 2.0399 -0.7214 -1.2492 19 6 1.6352 0.0689 -2.4953 20 6 2.1445 -0.6528 -3.7446 21 6 1.5339 -2.0541 -3.8087 22 6 1.9386 -2.8443 -2.5627 23 6 1.4298 -2.1229 -1.3136 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.6768 1.9562 -0.8899 28 1 1.6769 1.9562 0.8900 29 1 3.8625 2.3256 -0.0002 30 1 1.7501 -1.6649 1.1909 31 1 1.8887 1.0092 2.4243 32 1 0.4595 -0.0515 2.4517 33 1 3.8828 2.1874 5.1981 34 1 0.5302 -2.3507 3.5251 35 1 2.0132 -2.8270 4.5126 36 1 1.7915 -0.6977 5.8741 37 1 0.3085 -0.2202 4.8874 38 1 3.1262 -0.7997 -1.2056 39 1 2.0699 1.0674 -2.4494 40 1 0.5489 0.1472 -2.5389 41 1 1.8566 -0.0896 -4.6323 42 1 3.2308 -0.7314 -3.7012 43 1 0.4475 -1.9754 -3.8521 44 1 1.8964 -2.5680 -4.6989 45 1 3.0249 -2.9230 -2.5193 46 1 1.5032 -3.8425 -2.6082 47 1 1.7181 -2.6859 -0.4260 48 1 0.3435 -2.0446 -1.3573 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602777605.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:54 Heat of formation + Delta-G solvation = -42.757133 kcal Electronic energy + Delta-G solvation = -24212.607675 eV Core-core repulsion = 21074.345382 eV Total energy + Delta-G solvation = -3138.262293 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -39.70483 -37.07131 -36.11330 -34.56204 -31.74892 -31.08994 -30.55121 -28.33244 -25.96802 -25.61681 -24.60836 -22.39006 -22.20231 -21.01115 -19.87514 -18.90502 -18.11843 -16.70475 -16.42934 -15.44583 -14.84566 -14.48740 -14.43465 -14.11187 -14.07362 -14.00196 -13.47442 -13.16674 -12.93932 -12.51346 -12.18728 -12.14703 -12.01584 -11.85433 -11.53542 -11.35742 -11.00610 -10.93645 -10.82228 -10.78624 -10.69444 -10.45926 -10.36584 -10.12882 -10.07397 -9.88469 -9.53500 -9.30165 -9.25762 -8.68191 -8.24500 -7.95309 -7.29699 -5.84954 -3.84144 3.42553 3.48012 3.52420 4.56407 4.60509 4.79165 4.84646 4.90039 4.96481 5.23658 5.34646 5.40980 5.46059 5.51259 5.55308 5.60438 5.66518 5.70261 5.73034 5.80334 5.85375 5.88453 5.97428 6.06505 6.12644 6.14895 6.23501 6.24922 6.28141 6.34873 6.40587 6.44748 6.51455 6.58730 6.66442 6.73924 6.81061 6.87881 7.05194 7.19166 7.54469 7.72589 8.08537 8.13385 8.26524 8.35837 8.67773 9.13225 9.78054 11.25354 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019519 B = 0.005293 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.129366 B = 5288.699248 C = 5667.704914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.122 3.878 3 C 0.092 3.908 4 O -0.543 6.543 5 N -0.646 5.646 6 C 0.106 3.894 7 C 0.055 3.945 8 C -0.461 4.461 9 H 0.057 0.943 10 C 0.070 3.930 11 N -0.888 5.888 12 Si 0.887 3.113 13 H -0.282 1.282 14 H -0.291 1.291 15 H -0.276 1.276 16 C -0.218 4.218 17 C -0.160 4.160 18 C -0.065 4.065 19 C -0.115 4.115 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.117 4.117 23 C -0.119 4.119 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.034 0.966 28 H 0.044 0.956 29 H 0.365 0.635 30 H 0.327 0.673 31 H 0.079 0.921 32 H -0.008 1.008 33 H 0.254 0.746 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.066 0.934 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.189 -2.013 -14.710 16.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.030 3.970 3 C 0.013 3.987 4 O -0.345 6.345 5 N -0.275 5.275 6 C -0.023 4.023 7 C 0.054 3.946 8 C -0.499 4.499 9 H 0.076 0.924 10 C -0.132 4.132 11 N -0.526 5.526 12 Si 0.715 3.285 13 H -0.208 1.208 14 H -0.217 1.217 15 H -0.202 1.202 16 C -0.255 4.255 17 C -0.199 4.199 18 C -0.084 4.084 19 C -0.153 4.153 20 C -0.155 4.155 21 C -0.155 4.155 22 C -0.155 4.155 23 C -0.157 4.157 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.209 0.791 30 H 0.146 0.854 31 H 0.097 0.903 32 H 0.010 0.990 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.648 -2.166 -14.607 15.810 hybrid contribution -0.046 0.522 0.373 0.643 sum -5.694 -1.645 -14.234 15.418 Atomic orbital electron populations 1.22650 0.97931 1.02138 1.01827 1.20855 0.90645 0.93373 0.92132 1.22177 0.82329 0.95869 0.98312 1.86664 1.18504 1.31872 1.97451 1.60391 1.62714 1.04617 0.99823 1.21607 0.92198 0.99707 0.88742 1.18850 0.93706 0.92044 0.89972 1.20258 0.89033 1.04802 1.35854 0.92441 1.24869 0.97192 0.95323 0.95773 1.70014 1.35233 1.05560 1.41831 0.86691 0.86534 0.77785 0.77482 1.20775 1.21697 1.20157 1.22990 1.02421 0.93030 1.07058 1.22512 1.00040 0.99249 0.98068 1.21008 1.01723 0.93441 0.92224 1.21685 1.00335 0.98986 0.94262 1.21511 1.00657 0.95736 0.97587 1.21520 1.00323 0.95981 0.97673 1.21500 1.01171 0.98135 0.94696 1.21689 0.99928 0.96306 0.97744 0.92089 0.92310 0.92614 0.94758 0.93809 0.79065 0.85402 0.90314 0.99008 0.93589 0.92341 0.90616 0.90190 0.92333 0.89516 0.91873 0.92434 0.92681 0.91998 0.92443 0.92653 0.91951 0.92560 0.91537 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.63 7.49 37.16 0.28 -2.35 16 2 C 0.12 1.95 0.29 -131.60 -0.04 1.91 16 3 C 0.09 1.50 5.09 37.15 0.19 1.69 16 4 O -0.54 -9.84 12.94 -35.23 -0.46 -10.29 16 5 N -0.65 -12.71 5.85 -99.96 -0.58 -13.30 16 6 C 0.11 2.36 4.72 -3.82 -0.02 2.35 16 7 C 0.05 1.36 1.51 -155.66 -0.23 1.13 16 8 C -0.46 -12.83 8.73 -34.44 -0.30 -13.13 16 9 H 0.06 1.65 7.82 -52.48 -0.41 1.24 16 10 C 0.07 1.95 5.38 -17.82 -0.10 1.85 16 11 N -0.89 -25.49 12.96 55.43 0.72 -24.77 16 12 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 13 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 C -0.22 -4.82 9.96 -26.69 -0.27 -5.08 16 17 C -0.16 -3.84 9.46 -26.69 -0.25 -4.10 16 18 C -0.07 -0.92 1.55 -90.62 -0.14 -1.06 16 19 C -0.11 -1.38 4.47 -26.73 -0.12 -1.50 16 20 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 21 C -0.12 -1.19 5.92 -26.74 -0.16 -1.34 16 22 C -0.12 -1.32 5.92 -26.76 -0.16 -1.48 16 23 C -0.12 -1.52 4.48 -26.75 -0.12 -1.64 16 24 H 0.06 0.82 6.35 -51.93 -0.33 0.49 16 25 H 0.06 0.90 6.44 -51.93 -0.33 0.56 16 26 H 0.05 0.68 6.56 -51.93 -0.34 0.34 16 27 H 0.03 0.47 6.34 -51.93 -0.33 0.14 16 28 H 0.04 0.80 6.37 -51.93 -0.33 0.47 16 29 H 0.36 5.17 9.12 45.56 0.42 5.59 16 30 H 0.33 6.22 6.99 -39.29 -0.27 5.94 16 31 H 0.08 1.99 6.22 -51.93 -0.32 1.66 16 32 H -0.01 -0.17 6.34 -51.93 -0.33 -0.50 16 33 H 0.25 7.05 8.31 -40.82 -0.34 6.72 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 36 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.09 1.48 7.83 -51.93 -0.41 1.07 16 39 H 0.06 0.78 6.35 -51.93 -0.33 0.45 16 40 H 0.06 0.65 6.56 -51.93 -0.34 0.31 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.93 6.68 -51.93 -0.35 0.58 16 48 H 0.06 0.71 6.34 -51.93 -0.33 0.38 16 LS Contribution 355.57 15.07 5.36 5.36 Total: -1.00 -29.67 355.57 -9.28 -38.95 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -7.70 Total: 11.25 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: -1.59 Total: -24.16 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.13 Total: -38.07 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -0.46 Total: -10.29 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.67 -9.28 -38.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602777605.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.804 kcal (2) G-P(sol) polarization free energy of solvation -29.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds