Wall clock time and date at job start Tue Mar 31 2020 05:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46756 * 2 1 4 4 O 1.42901 * 109.47155 * 185.00157 * 3 2 1 5 5 N 1.46897 * 109.47074 * 240.00013 * 2 1 3 6 6 C 1.46900 * 110.99991 * 64.86000 * 5 2 1 7 7 C 1.52996 * 109.47287 * 185.14434 * 6 5 2 8 8 C 1.50707 * 115.54725 * 29.87699 * 7 6 5 9 9 H 1.07997 * 120.00309 * 274.03534 * 8 7 6 10 10 C 1.37871 * 119.99720 * 94.03983 * 8 7 6 11 11 N 1.31518 * 120.00280 * 354.54076 * 10 8 7 12 12 Si 1.86804 * 119.99927 * 174.53780 * 10 8 7 13 13 H 1.48501 * 109.46878 * 60.00050 * 12 10 8 14 14 H 1.48499 * 109.47483 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47221 * 300.00068 * 12 10 8 16 16 C 1.53002 * 117.50112 * 244.17332 * 7 6 5 17 17 C 1.53002 * 117.50187 * 175.54885 * 7 6 5 18 18 C 1.52998 * 109.46812 * 119.99692 * 2 1 3 19 19 C 1.52994 * 109.47293 * 58.05280 * 18 2 1 20 20 C 1.53003 * 109.47459 * 179.97438 * 19 18 2 21 21 C 1.52998 * 109.46824 * 59.99634 * 20 19 18 22 22 C 1.53003 * 109.47257 * 300.00317 * 21 20 19 23 23 C 1.52991 * 109.47179 * 60.00067 * 22 21 20 24 24 H 1.09002 * 109.47012 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47193 * 299.99819 * 1 2 3 26 26 H 1.08997 * 109.47186 * 60.00458 * 1 2 3 27 27 H 1.09000 * 109.47386 * 304.99883 * 3 2 1 28 28 H 1.09007 * 109.47649 * 65.00137 * 3 2 1 29 29 H 0.96702 * 114.00011 * 180.02562 * 4 3 2 30 30 H 1.00894 * 111.00099 * 188.81359 * 5 2 1 31 31 H 1.09001 * 109.47421 * 65.14626 * 6 5 2 32 32 H 1.09001 * 109.47289 * 305.14218 * 6 5 2 33 33 H 0.97005 * 119.99855 * 185.00727 * 11 10 8 34 34 H 1.08993 * 117.49671 * 359.97438 * 16 7 6 35 35 H 1.08994 * 117.49727 * 145.01991 * 16 7 6 36 36 H 1.09002 * 117.49831 * 214.97801 * 17 7 6 37 37 H 1.08996 * 117.49548 * 359.97438 * 17 7 6 38 38 H 1.09001 * 109.46463 * 178.04495 * 18 2 1 39 39 H 1.08998 * 109.46988 * 299.99514 * 19 18 2 40 40 H 1.09007 * 109.47604 * 59.99139 * 19 18 2 41 41 H 1.08998 * 109.47022 * 299.99981 * 20 19 18 42 42 H 1.08996 * 109.46977 * 180.02562 * 20 19 18 43 43 H 1.09003 * 109.46578 * 180.02562 * 21 20 19 44 44 H 1.08998 * 109.47038 * 60.00356 * 21 20 19 45 45 H 1.09005 * 109.46878 * 299.99694 * 22 21 20 46 46 H 1.08998 * 109.46918 * 180.02562 * 22 21 20 47 47 H 1.09003 * 109.47417 * 180.02562 * 23 22 21 48 48 H 1.08998 * 109.47159 * 59.99934 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4641 1.4443 -0.1175 5 7 2.0197 -0.6925 -1.1994 6 6 1.6458 0.0374 -2.4182 7 6 2.0589 -0.7757 -3.6466 8 6 2.0618 -2.2717 -3.4648 9 1 2.9337 -2.7650 -3.0612 10 6 0.9514 -3.0107 -3.8139 11 7 -0.1474 -2.4022 -4.2039 12 14 1.0077 -4.8761 -3.7331 13 1 1.2993 -5.3026 -2.3408 14 1 -0.3040 -5.4297 -4.1553 15 1 2.0722 -5.3789 -4.6381 16 6 3.1219 -0.1735 -4.5677 17 6 1.6615 -0.2317 -5.0203 18 6 2.0399 -0.7212 1.2493 19 6 1.4903 -2.1488 1.2741 20 6 2.0007 -2.8702 2.5231 21 6 1.5317 -2.1213 3.7721 22 6 2.0814 -0.6936 3.7472 23 6 1.5710 0.0277 2.4983 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.6053 1.9815 -0.8418 28 1 1.7516 1.9299 0.9314 29 1 3.8571 2.3278 -0.1237 30 1 3.0178 -0.8328 -1.1538 31 1 2.1528 1.0022 -2.4339 32 1 0.5671 0.1935 -2.4318 33 1 -0.9506 -2.9170 -4.3796 34 1 3.5265 0.8022 -4.2988 35 1 3.8235 -0.8593 -5.0423 36 1 1.4025 -0.9559 -5.7927 37 1 1.1053 0.7053 -5.0488 38 1 3.1294 -0.7516 1.2319 39 1 0.4009 -2.1184 1.2915 40 1 1.8247 -2.6825 0.3844 41 1 3.0902 -2.9006 2.5054 42 1 1.6095 -3.8874 2.5405 43 1 1.8957 -2.6350 4.6618 44 1 0.4423 -2.0909 3.7898 45 1 3.1709 -0.7241 3.7296 46 1 1.7476 -0.1603 4.6372 47 1 1.9629 1.0447 2.4803 48 1 0.4815 0.0581 2.5160 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602777606.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:58 Heat of formation + Delta-G solvation = -43.501757 kcal Electronic energy + Delta-G solvation = -24344.239439 eV Core-core repulsion = 21205.944857 eV Total energy + Delta-G solvation = -3138.294582 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.61317 -37.09864 -36.23907 -34.56126 -31.66684 -31.07139 -30.43135 -28.30133 -26.03888 -25.37081 -24.62836 -22.26365 -22.09215 -20.93063 -19.71112 -18.91454 -18.12493 -17.08819 -16.09082 -15.43203 -14.90196 -14.58944 -14.48352 -14.25806 -13.97005 -13.86118 -13.68480 -12.98440 -12.66211 -12.22961 -12.14794 -11.94420 -11.80218 -11.72035 -11.60760 -11.43996 -11.07930 -10.94623 -10.78411 -10.66370 -10.58721 -10.41842 -10.35099 -10.01494 -9.97920 -9.77256 -9.58444 -9.50719 -9.24617 -8.71466 -8.16750 -7.85320 -7.19498 -5.78660 -3.79352 3.44323 3.47848 3.51656 4.41189 4.59711 4.84650 4.90528 4.96343 5.16245 5.31353 5.37692 5.43495 5.49835 5.56445 5.61478 5.66382 5.74366 5.77970 5.82386 5.87040 5.90140 6.00997 6.04519 6.18150 6.23589 6.30460 6.35401 6.37260 6.44959 6.45251 6.51173 6.62579 6.69792 6.73141 6.75499 6.87971 6.94628 7.00295 7.12518 7.25497 7.57500 7.68464 7.79115 8.10943 8.25666 8.49624 8.72101 9.15992 9.81524 11.30360 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.006560 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.937917 B = 4267.191958 C = 5446.025509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.121 3.879 3 C 0.042 3.958 4 O -0.565 6.565 5 N -0.633 5.633 6 C 0.108 3.892 7 C 0.045 3.955 8 C -0.455 4.455 9 H 0.055 0.945 10 C 0.073 3.927 11 N -0.887 5.887 12 Si 0.883 3.117 13 H -0.277 1.277 14 H -0.292 1.292 15 H -0.282 1.282 16 C -0.221 4.221 17 C -0.149 4.149 18 C -0.064 4.064 19 C -0.110 4.110 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.116 4.116 23 C -0.117 4.117 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.042 0.958 28 H 0.040 0.960 29 H 0.370 0.630 30 H 0.339 0.661 31 H -0.004 1.004 32 H 0.061 0.939 33 H 0.255 0.745 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.084 0.916 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.053 0.947 47 H 0.057 0.943 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.480 6.626 13.378 15.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.029 3.971 3 C -0.037 4.037 4 O -0.369 6.369 5 N -0.262 5.262 6 C -0.021 4.021 7 C 0.045 3.955 8 C -0.493 4.493 9 H 0.073 0.927 10 C -0.128 4.128 11 N -0.525 5.525 12 Si 0.712 3.288 13 H -0.203 1.203 14 H -0.218 1.218 15 H -0.208 1.208 16 C -0.259 4.259 17 C -0.187 4.187 18 C -0.083 4.083 19 C -0.147 4.147 20 C -0.158 4.158 21 C -0.155 4.155 22 C -0.153 4.153 23 C -0.154 4.154 24 H 0.093 0.907 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.215 0.785 30 H 0.158 0.842 31 H 0.014 0.986 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.661 5.479 13.196 14.385 hybrid contribution 0.530 0.526 0.027 0.747 sum 2.191 6.006 13.223 14.687 Atomic orbital electron populations 1.21874 0.93873 1.03302 1.00430 1.20970 0.94947 0.88668 0.92522 1.23171 0.81149 1.00531 0.98890 1.86485 1.20380 1.32871 1.97126 1.60456 1.19190 1.47666 0.98934 1.21495 0.98877 0.91676 0.90030 1.18919 0.95354 0.94512 0.86747 1.20076 1.00119 0.88596 1.40549 0.92691 1.24826 0.95738 0.97308 0.94932 1.69986 1.00739 1.34852 1.46967 0.86818 0.76661 0.87004 0.78332 1.20272 1.21806 1.20776 1.23147 0.92876 0.99951 1.09908 1.22407 0.94328 1.00005 1.01996 1.20991 1.00195 0.94903 0.92184 1.21564 1.00380 0.95019 0.97769 1.21574 1.00595 0.98632 0.95029 1.21534 1.00510 0.95694 0.97808 1.21496 1.00481 0.95872 0.97480 1.21715 1.00728 0.98517 0.94467 0.90654 0.93413 0.92596 0.93960 0.94170 0.78471 0.84249 0.98593 0.92041 0.93561 0.92405 0.90811 0.89778 0.92595 0.91176 0.92185 0.89774 0.92452 0.92523 0.92871 0.92310 0.92328 0.92801 0.92484 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 7.67 37.16 0.29 -1.93 16 2 C 0.12 1.96 0.25 -131.61 -0.03 1.93 16 3 C 0.04 0.61 4.97 37.15 0.18 0.79 16 4 O -0.56 -8.08 12.65 -35.23 -0.45 -8.53 16 5 N -0.63 -12.64 4.41 -99.97 -0.44 -13.08 16 6 C 0.11 2.37 4.97 -3.83 -0.02 2.35 16 7 C 0.05 1.12 1.98 -155.66 -0.31 0.81 16 8 C -0.46 -12.31 7.99 -34.44 -0.28 -12.59 16 9 H 0.05 1.51 7.82 -52.49 -0.41 1.10 16 10 C 0.07 2.02 5.35 -17.82 -0.10 1.92 16 11 N -0.89 -25.35 12.34 55.43 0.68 -24.67 16 12 Si 0.88 21.70 29.54 -169.99 -5.02 16.67 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 C -0.22 -5.01 9.88 -26.73 -0.26 -5.28 16 17 C -0.15 -3.63 8.96 -26.73 -0.24 -3.87 16 18 C -0.06 -0.93 1.50 -90.63 -0.14 -1.07 16 19 C -0.11 -1.70 4.66 -26.73 -0.12 -1.82 16 20 C -0.12 -1.59 5.92 -26.73 -0.16 -1.74 16 21 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 22 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 23 C -0.12 -1.42 4.50 -26.74 -0.12 -1.54 16 24 H 0.07 1.34 6.39 -51.93 -0.33 1.00 16 25 H 0.05 0.64 6.48 -51.93 -0.34 0.30 16 26 H 0.06 0.97 6.41 -51.93 -0.33 0.64 16 27 H 0.04 0.65 6.76 -51.93 -0.35 0.30 16 28 H 0.04 0.51 6.12 -51.93 -0.32 0.19 16 29 H 0.37 3.66 9.12 45.56 0.42 4.07 16 30 H 0.34 7.05 8.27 -39.29 -0.32 6.72 16 31 H 0.00 -0.08 6.38 -51.93 -0.33 -0.41 16 32 H 0.06 1.45 6.20 -51.93 -0.32 1.12 16 33 H 0.25 7.09 8.32 -40.82 -0.34 6.75 16 34 H 0.06 1.20 8.03 -51.93 -0.42 0.78 16 35 H 0.07 1.68 8.14 -51.93 -0.42 1.25 16 36 H 0.08 2.21 7.94 -51.93 -0.41 1.80 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.07 1.12 7.87 -51.93 -0.41 0.71 16 39 H 0.06 0.94 6.39 -51.93 -0.33 0.61 16 40 H 0.08 1.56 7.66 -51.92 -0.40 1.16 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.67 6.28 -51.93 -0.33 0.35 16 48 H 0.06 0.76 6.48 -51.93 -0.34 0.42 16 LS Contribution 354.79 15.07 5.35 5.35 Total: -1.00 -28.55 354.79 -9.29 -37.84 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -7.79 Total: 11.39 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -1.62 Total: -24.98 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.24 Total: -37.75 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -0.45 Total: -8.53 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.55 -9.29 -37.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602777606.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.660 kcal (2) G-P(sol) polarization free energy of solvation -28.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds