Wall clock time and date at job start Tue Mar 31 2020 06:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.47101 * 2 1 4 4 C 1.42903 * 114.00196 * 179.97438 * 3 2 1 5 5 H 1.08998 * 112.90633 * 341.25595 * 4 3 2 6 6 C 1.53953 * 113.66766 * 112.43599 * 4 3 2 7 7 C 1.53777 * 87.02076 * 139.93550 * 6 4 3 8 8 H 1.09002 * 113.61148 * 89.23029 * 7 6 4 9 9 N 1.46900 * 113.61497 * 220.04870 * 7 6 4 10 10 C 1.46896 * 111.00135 * 293.78042 * 9 7 6 11 11 C 1.46904 * 110.99852 * 169.82873 * 9 7 6 12 12 C 1.52995 * 109.46886 * 198.72071 * 11 9 7 13 13 C 1.50704 * 115.55359 * 294.84973 * 12 11 9 14 14 H 1.07998 * 120.00118 * 98.83066 * 13 12 11 15 15 C 1.37878 * 120.00238 * 278.84037 * 13 12 11 16 16 N 1.31516 * 119.99709 * 5.35778 * 15 13 12 17 17 Si 1.86799 * 120.00154 * 185.36158 * 15 13 12 18 18 H 1.48499 * 109.47107 * 269.99687 * 17 15 13 19 19 H 1.48503 * 109.47006 * 149.99671 * 17 15 13 20 20 H 1.48495 * 109.46950 * 29.99986 * 17 15 13 21 21 C 1.53003 * 117.52331 * 80.55564 * 12 11 9 22 22 C 1.53003 * 60.00207 * 107.48165 * 21 12 11 23 23 C 1.53778 * 113.61680 * 209.99853 * 4 3 2 24 24 C 1.52998 * 113.61429 * 105.47227 * 23 4 3 25 25 C 1.52999 * 113.61514 * 334.56652 * 23 4 3 26 26 H 1.08996 * 109.47532 * 300.00881 * 1 2 3 27 27 H 1.09004 * 109.46751 * 60.00312 * 1 2 3 28 28 H 1.09007 * 109.47135 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47532 * 239.99119 * 2 1 3 30 30 H 1.09004 * 109.46751 * 119.99688 * 2 1 3 31 31 H 1.08999 * 113.61512 * 25.41258 * 6 4 3 32 32 H 1.09002 * 113.66934 * 254.46637 * 6 4 3 33 33 H 1.08997 * 109.47346 * 287.51548 * 10 9 7 34 34 H 1.09000 * 109.47033 * 47.51708 * 10 9 7 35 35 H 1.08999 * 109.47235 * 167.51415 * 10 9 7 36 36 H 1.08998 * 109.47197 * 78.72187 * 11 9 7 37 37 H 1.09000 * 109.47140 * 318.71582 * 11 9 7 38 38 H 0.97005 * 120.00255 * 354.71563 * 16 15 13 39 39 H 1.08999 * 117.50084 * 214.97219 * 21 12 11 40 40 H 1.08998 * 117.49590 * 359.97438 * 21 12 11 41 41 H 1.09002 * 117.49706 * 252.51455 * 22 21 12 42 42 H 1.08992 * 117.49973 * 107.49360 * 22 21 12 43 43 H 1.08998 * 109.47092 * 157.50123 * 24 23 4 44 44 H 1.09003 * 109.46727 * 277.49240 * 24 23 4 45 45 H 1.08993 * 109.47293 * 37.49305 * 24 23 4 46 46 H 1.08998 * 109.46992 * 316.13925 * 25 23 4 47 47 H 1.09000 * 109.46914 * 76.13664 * 25 23 4 48 48 H 1.09000 * 109.47234 * 196.13798 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9288 0.5459 0.3236 6 6 4.0050 2.0452 -1.3026 7 6 4.9900 2.8313 -0.4213 8 1 5.9147 2.2931 -0.2129 9 7 5.2219 4.2071 -0.8808 10 6 5.9108 4.2198 -2.1782 11 6 5.9714 4.9774 0.1207 12 6 5.7970 6.4729 -0.1510 13 6 6.3846 6.9711 -1.4463 14 1 5.7498 7.1112 -2.3087 15 6 7.7327 7.2478 -1.5304 16 7 8.5239 6.9781 -0.5151 17 14 8.4353 8.0060 -3.0864 18 1 8.8518 6.9274 -4.0182 19 1 9.6119 8.8437 -2.7412 20 1 7.4007 8.8498 -3.7366 21 6 4.5087 7.1355 0.3412 22 6 5.8341 7.4185 1.0513 23 6 3.9483 2.7253 0.7051 24 6 4.5593 2.4540 2.0813 25 6 2.9398 3.8758 0.7174 26 1 -0.3634 0.5139 0.8898 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8898 30 1 1.8933 -0.5138 0.8901 31 1 3.3021 2.6785 -1.8437 32 1 4.4859 1.3037 -1.9406 33 1 6.9500 3.9213 -2.0407 34 1 5.4194 3.5230 -2.8573 35 1 5.8740 5.2244 -2.5993 36 1 7.0284 4.7182 0.0619 37 1 5.5945 4.7427 1.1162 38 1 8.1492 6.6564 0.3198 39 1 4.0862 7.9315 -0.2718 40 1 3.7848 6.5058 0.8584 41 1 5.9823 6.9750 2.0359 42 1 6.2835 8.4007 0.9054 43 1 5.2398 3.2644 2.3428 44 1 3.7652 2.3921 2.8255 45 1 5.1079 1.5126 2.0561 46 1 2.4773 3.9641 -0.2656 47 1 2.1711 3.6771 1.4642 48 1 3.4527 4.8059 0.9625 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602780132.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:13 Heat of formation + Delta-G solvation = -3.505112 kcal Electronic energy + Delta-G solvation = -24088.067386 eV Core-core repulsion = 20951.507189 eV Total energy + Delta-G solvation = -3136.560197 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.20505 -37.52599 -36.43549 -33.83953 -31.85593 -31.13830 -30.21241 -27.10452 -26.40353 -25.56127 -24.23992 -22.95034 -22.37515 -21.38080 -20.89152 -19.11248 -17.99987 -16.80502 -16.46847 -15.69095 -15.17460 -14.96946 -14.37729 -14.15490 -13.73124 -13.49708 -13.20999 -13.00562 -12.93797 -12.61386 -12.47634 -12.33308 -11.97251 -11.74407 -11.59757 -11.56268 -11.21666 -11.19457 -11.11773 -10.82624 -10.71377 -10.50210 -10.47813 -10.22248 -10.12504 -10.07906 -9.68446 -9.34855 -9.16528 -8.41728 -8.31392 -8.14887 -7.41566 -6.27250 -3.96777 3.43415 3.47769 3.62507 3.70016 4.53620 4.63569 4.71061 4.74695 4.91546 4.94356 5.03536 5.14498 5.24881 5.35697 5.41532 5.48865 5.53363 5.58163 5.69112 5.76950 5.86271 5.89779 5.93769 5.97811 6.12794 6.15758 6.23197 6.25828 6.35571 6.38521 6.42415 6.52144 6.58036 6.59424 6.71968 6.76055 6.85065 6.94361 7.09441 7.23534 7.36731 7.39363 7.40479 7.98002 8.10167 8.38504 8.49093 8.95560 9.72796 11.11104 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026961 B = 0.004563 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.279795 B = 6134.424935 C = 6498.317840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.366 6.366 4 C 0.069 3.931 5 H 0.079 0.921 6 C -0.140 4.140 7 C 0.060 3.940 8 H 0.053 0.947 9 N -0.504 5.504 10 C 0.028 3.972 11 C 0.097 3.903 12 C 0.036 3.964 13 C -0.556 4.556 14 H 0.054 0.946 15 C 0.025 3.975 16 N -0.910 5.910 17 Si 1.062 2.938 18 H -0.289 1.289 19 H -0.286 1.286 20 H -0.289 1.289 21 C -0.186 4.186 22 C -0.190 4.190 23 C -0.066 4.066 24 C -0.140 4.140 25 C -0.104 4.104 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.013 0.987 34 H 0.038 0.962 35 H 0.105 0.895 36 H 0.030 0.970 37 H 0.044 0.956 38 H 0.274 0.726 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.041 0.959 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.588 -12.892 2.042 16.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.285 6.285 4 C 0.011 3.989 5 H 0.097 0.903 6 C -0.178 4.178 7 C -0.049 4.049 8 H 0.070 0.930 9 N -0.227 5.227 10 C -0.120 4.120 11 C -0.031 4.031 12 C 0.035 3.965 13 C -0.594 4.594 14 H 0.072 0.928 15 C -0.180 4.180 16 N -0.546 5.546 17 Si 0.891 3.109 18 H -0.216 1.216 19 H -0.212 1.212 20 H -0.215 1.215 21 C -0.223 4.223 22 C -0.228 4.228 23 C -0.066 4.066 24 C -0.197 4.197 25 C -0.161 4.161 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.032 0.968 34 H 0.057 0.943 35 H 0.123 0.877 36 H 0.048 0.952 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.736 -12.033 1.250 15.529 hybrid contribution -0.305 -1.216 0.896 1.541 sum -10.041 -13.250 2.146 16.763 Atomic orbital electron populations 1.21731 0.94070 1.01836 1.03127 1.22452 0.95409 0.84761 0.99543 1.87988 1.20724 1.25181 1.94557 1.23762 0.80708 0.97203 0.97270 0.90285 1.23487 0.98722 0.99004 0.96540 1.22910 0.95027 0.91296 0.95684 0.92961 1.62056 1.48901 1.08302 1.03485 1.22610 0.94537 1.04373 0.90475 1.21755 0.94641 0.94469 0.92207 1.18971 0.95396 0.88358 0.93745 1.21236 0.95433 1.47208 0.95540 0.92836 1.25654 0.93704 0.95243 1.03448 1.70690 1.37841 1.41827 1.04201 0.83642 0.75719 0.76669 0.74857 1.21586 1.21196 1.21474 1.22807 0.91033 1.03750 1.04704 1.22798 1.01764 1.02111 0.96127 1.22139 0.95789 0.95063 0.93643 1.21835 1.00438 1.01189 0.96265 1.21292 0.96520 0.96599 1.01713 0.91944 0.91860 0.91515 0.93776 0.93857 0.88350 0.92169 0.96841 0.94345 0.87664 0.95174 0.93749 0.91449 0.90766 0.91049 0.92040 0.90234 0.92019 0.92652 0.93198 0.92008 0.93976 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 37.16 0.38 -0.93 16 2 C 0.06 0.57 6.50 37.16 0.24 0.81 16 3 O -0.37 -4.95 9.55 -35.23 -0.34 -5.28 16 4 C 0.07 0.92 3.74 -25.83 -0.10 0.83 16 5 H 0.08 0.94 7.69 -51.93 -0.40 0.54 16 6 C -0.14 -2.03 6.30 -25.83 -0.16 -2.19 16 7 C 0.06 0.99 2.60 -66.90 -0.17 0.82 16 8 H 0.05 0.88 8.10 -51.93 -0.42 0.46 16 9 N -0.50 -9.89 3.81 -233.91 -0.89 -10.78 16 10 C 0.03 0.56 8.98 60.06 0.54 1.10 16 11 C 0.10 2.12 4.13 -3.82 -0.02 2.10 16 12 C 0.04 0.86 1.08 -155.66 -0.17 0.69 16 13 C -0.56 -14.68 6.05 -34.44 -0.21 -14.89 16 14 H 0.05 1.45 7.18 -52.49 -0.38 1.07 16 15 C 0.02 0.67 5.42 -17.82 -0.10 0.57 16 16 N -0.91 -26.31 13.61 55.43 0.75 -25.56 16 17 Si 1.06 24.61 29.91 -169.99 -5.08 19.53 16 18 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 21 C -0.19 -4.08 9.90 -26.73 -0.26 -4.34 16 22 C -0.19 -4.38 8.91 -26.73 -0.24 -4.61 16 23 C -0.07 -0.98 0.77 -153.70 -0.12 -1.10 16 24 C -0.14 -1.91 9.11 37.16 0.34 -1.57 16 25 C -0.10 -1.68 7.61 37.16 0.28 -1.40 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.10 1.57 7.62 -51.93 -0.40 1.17 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.01 0.28 7.91 -51.93 -0.41 -0.13 16 34 H 0.04 0.68 7.18 -51.93 -0.37 0.31 16 35 H 0.11 2.41 5.05 -51.93 -0.26 2.15 16 36 H 0.03 0.74 7.41 -51.93 -0.38 0.36 16 37 H 0.04 0.91 5.05 -51.93 -0.26 0.65 16 38 H 0.27 7.91 6.11 -40.82 -0.25 7.66 16 39 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 40 H 0.07 1.44 5.67 -51.93 -0.29 1.15 16 41 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.08 1.96 8.14 -51.93 -0.42 1.54 16 43 H 0.06 0.91 6.61 -51.93 -0.34 0.57 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.61 7.94 -51.93 -0.41 0.19 16 46 H 0.06 1.06 7.32 -51.93 -0.38 0.68 16 47 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.07 1.23 4.18 -51.93 -0.22 1.01 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -28.03 360.16 -8.52 -36.55 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -8.63 Total: 4.22 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: 0.24 Total: -24.11 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: -0.14 Total: -36.33 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.34 Total: -5.28 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.08 Total: 19.53 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.03 -8.52 -36.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602780132.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.045 kcal (2) G-P(sol) polarization free energy of solvation -28.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds