Wall clock time and date at job start Tue Mar 31 2020 06:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42899 * 109.47830 * 2 1 4 4 C 1.42898 * 114.00090 * 179.97438 * 3 2 1 5 5 H 1.08996 * 112.85307 * 18.80266 * 4 3 2 6 6 C 1.53786 * 113.61161 * 247.49080 * 4 3 2 7 7 C 1.53777 * 87.08263 * 220.02144 * 6 4 3 8 8 H 1.08997 * 113.61794 * 270.88835 * 7 6 4 9 9 N 1.46898 * 113.61388 * 139.98156 * 7 6 4 10 10 C 1.46898 * 111.00231 * 200.03603 * 9 7 6 11 11 C 1.46901 * 110.99721 * 76.08172 * 9 7 6 12 12 C 1.53000 * 109.47065 * 188.91090 * 11 9 7 13 13 C 1.50699 * 115.55335 * 292.28500 * 12 11 9 14 14 H 1.08000 * 120.00162 * 144.65504 * 13 12 11 15 15 C 1.37881 * 119.99993 * 324.65543 * 13 12 11 16 16 N 1.31517 * 119.99826 * 154.31809 * 15 13 12 17 17 Si 1.86798 * 119.99995 * 334.33037 * 15 13 12 18 18 H 1.48492 * 109.47749 * 92.10566 * 17 15 13 19 19 H 1.48499 * 109.46861 * 212.11084 * 17 15 13 20 20 H 1.48502 * 109.47229 * 332.10410 * 17 15 13 21 21 C 1.53003 * 117.49598 * 146.61445 * 12 11 9 22 22 C 1.53000 * 117.49657 * 77.95432 * 12 11 9 23 23 C 1.53780 * 113.60974 * 150.00199 * 4 3 2 24 24 C 1.53007 * 113.60971 * 254.52268 * 23 4 3 25 25 C 1.52995 * 113.61941 * 25.42894 * 23 4 3 26 26 H 1.08998 * 109.47699 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47236 * 300.00739 * 1 2 3 28 28 H 1.09003 * 109.46908 * 59.99931 * 1 2 3 29 29 H 1.08998 * 109.47236 * 239.99261 * 2 1 3 30 30 H 1.09003 * 109.46908 * 120.00068 * 2 1 3 31 31 H 1.09000 * 113.61646 * 334.57539 * 6 4 3 32 32 H 1.09005 * 113.61166 * 105.47158 * 6 4 3 33 33 H 1.09001 * 109.47038 * 45.67578 * 10 9 7 34 34 H 1.08996 * 109.47400 * 165.67320 * 10 9 7 35 35 H 1.09003 * 109.47358 * 285.67318 * 10 9 7 36 36 H 1.08993 * 109.47713 * 308.91501 * 11 9 7 37 37 H 1.09011 * 109.46884 * 68.91638 * 11 9 7 38 38 H 0.96998 * 119.99431 * 179.97438 * 16 15 13 39 39 H 1.09003 * 117.50053 * 0.02562 * 21 12 11 40 40 H 1.09005 * 117.49920 * 145.02636 * 21 12 11 41 41 H 1.09003 * 117.49947 * 214.97522 * 22 12 11 42 42 H 1.09000 * 117.49720 * 359.97438 * 22 12 11 43 43 H 1.09001 * 109.46746 * 79.51331 * 24 23 4 44 44 H 1.09002 * 109.46966 * 199.50556 * 24 23 4 45 45 H 1.08991 * 109.47221 * 319.50895 * 24 23 4 46 46 H 1.08995 * 109.47493 * 48.02369 * 25 23 4 47 47 H 1.09000 * 109.47295 * 168.02660 * 25 23 4 48 48 H 1.09010 * 109.47004 * 288.02105 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.4310 1.4599 0.0006 5 1 3.9281 0.5454 -0.3228 6 6 4.0020 2.0464 1.3025 7 6 4.9898 2.8312 0.4233 8 1 5.9141 2.2917 0.2165 9 7 5.2214 4.2072 0.8825 10 6 5.7624 5.0395 -0.2003 11 6 6.1057 4.2290 2.0553 12 6 6.1461 5.6433 2.6373 13 6 6.8163 6.6820 1.7753 14 1 6.4422 7.6951 1.7611 15 6 7.9070 6.3391 1.0047 16 7 8.1848 7.0236 -0.0833 17 14 8.9899 4.9019 1.5060 18 1 8.5043 3.6627 0.8475 19 1 10.3900 5.1681 1.0889 20 1 8.9365 4.7325 2.9804 21 6 6.2976 5.7791 4.1538 22 6 4.9555 6.0919 3.4871 23 6 3.9490 2.7249 -0.7039 24 6 4.5612 2.4530 -2.0796 25 6 2.9407 3.8754 -0.7175 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.2980 2.6806 1.8413 32 1 4.4807 1.3050 1.9423 33 1 5.1933 4.8633 -1.1131 34 1 5.6873 6.0909 0.0773 35 1 6.8081 4.7821 -0.3687 36 1 5.7281 3.5370 2.8080 37 1 7.1108 3.9295 1.7581 38 1 8.9523 6.7825 -0.6252 39 1 6.3688 4.8608 4.7367 40 1 6.8816 6.6200 4.5280 41 1 4.6572 7.1383 3.4231 42 1 4.1433 5.3794 3.6312 43 1 3.7651 2.3379 -2.8151 44 1 5.2007 3.2885 -2.3642 45 1 5.1537 1.5391 -2.0394 46 1 2.5315 4.0119 0.2835 47 1 3.4390 4.7916 -1.0344 48 1 2.1330 3.6425 -1.4116 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602780136.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:17 Heat of formation + Delta-G solvation = 18.511610 kcal Electronic energy + Delta-G solvation = -24295.575946 eV Core-core repulsion = 21159.970466 eV Total energy + Delta-G solvation = -3135.605481 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.20637 -37.61704 -36.51393 -33.65691 -32.30642 -31.12429 -30.30967 -27.15740 -26.59242 -25.85717 -24.24689 -22.90546 -22.29848 -21.39699 -20.95634 -18.95899 -17.98279 -16.78073 -16.20318 -15.64644 -15.41215 -15.16287 -14.72679 -14.16208 -13.57034 -13.55137 -13.37087 -13.10588 -12.83131 -12.71495 -12.49581 -12.33184 -12.03906 -11.74187 -11.70580 -11.56072 -11.33897 -11.18623 -10.96494 -10.86086 -10.63437 -10.49627 -10.42495 -10.24657 -10.03764 -9.88253 -9.81200 -9.24164 -9.15627 -9.09681 -8.67546 -8.06509 -7.25980 -6.23565 -3.98545 3.17162 3.34538 3.42385 3.72211 4.35748 4.64928 4.70228 4.76154 4.91440 4.95171 5.02193 5.09107 5.17216 5.27017 5.44825 5.51480 5.57056 5.61163 5.73214 5.78979 5.86123 5.93061 5.95326 5.98282 6.09155 6.15822 6.24243 6.26412 6.28570 6.39788 6.46153 6.49256 6.60721 6.67203 6.70726 6.74809 6.88638 6.93748 6.99998 7.12184 7.29579 7.39102 7.65330 7.78366 8.01541 8.16941 8.53923 8.90773 9.48296 10.86952 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022492 B = 0.005407 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.575328 B = 5177.034424 C = 5617.438590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.366 6.366 4 C 0.069 3.931 5 H 0.079 0.921 6 C -0.140 4.140 7 C 0.058 3.942 8 H 0.052 0.948 9 N -0.504 5.504 10 C 0.026 3.974 11 C 0.084 3.916 12 C 0.020 3.980 13 C -0.487 4.487 14 H 0.076 0.924 15 C 0.091 3.909 16 N -0.871 5.871 17 Si 0.864 3.136 18 H -0.282 1.282 19 H -0.298 1.298 20 H -0.262 1.262 21 C -0.216 4.216 22 C -0.174 4.174 23 C -0.065 4.065 24 C -0.141 4.141 25 C -0.104 4.104 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.099 0.901 32 H 0.058 0.942 33 H 0.040 0.960 34 H 0.118 0.882 35 H 0.020 0.980 36 H 0.050 0.950 37 H 0.026 0.974 38 H 0.264 0.736 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.033 -13.231 -1.538 16.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.284 6.284 4 C 0.011 3.989 5 H 0.097 0.903 6 C -0.178 4.178 7 C -0.051 4.051 8 H 0.070 0.930 9 N -0.227 5.227 10 C -0.121 4.121 11 C -0.043 4.043 12 C 0.019 3.981 13 C -0.523 4.523 14 H 0.094 0.906 15 C -0.113 4.113 16 N -0.506 5.506 17 Si 0.694 3.306 18 H -0.210 1.210 19 H -0.226 1.226 20 H -0.187 1.187 21 C -0.254 4.254 22 C -0.211 4.211 23 C -0.066 4.066 24 C -0.198 4.198 25 C -0.161 4.161 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.118 0.882 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.136 0.864 35 H 0.039 0.961 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.067 0.933 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.478 -12.819 -1.582 16.632 hybrid contribution 1.869 -1.579 0.087 2.448 sum -8.609 -14.398 -1.495 16.842 Atomic orbital electron populations 1.21728 0.94068 1.01821 1.03126 1.22450 0.95399 0.84784 0.99534 1.87983 1.20727 1.25163 1.94567 1.23714 0.80686 0.97180 0.97339 0.90298 1.23475 0.98790 0.99006 0.96516 1.22926 0.95065 0.91604 0.95544 0.92997 1.62158 1.47346 1.06516 1.06702 1.22978 0.95883 1.01821 0.91432 1.21857 0.93606 0.96713 0.92103 1.19199 0.97618 0.93012 0.88257 1.20185 1.12915 0.96013 1.23175 0.90555 1.24804 0.97370 0.95764 0.93346 1.70080 1.27420 1.41676 1.11404 0.87362 0.79584 0.83015 0.80598 1.21044 1.22553 1.18699 1.23153 1.01356 1.01062 0.99865 1.22613 0.90842 1.00226 1.07434 1.22132 0.95649 0.95165 0.93626 1.21839 1.00358 1.01406 0.96189 1.21285 0.96458 0.96177 1.02228 0.91541 0.91850 0.91942 0.93875 0.93794 0.88213 0.92313 0.94138 0.86368 0.96146 0.93150 0.95612 0.92600 0.91906 0.90045 0.90460 0.90969 0.92633 0.91782 0.93292 0.91718 0.91620 0.93716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.16 0.38 -0.94 16 2 C 0.06 0.58 6.50 37.16 0.24 0.82 16 3 O -0.37 -5.00 9.55 -35.23 -0.34 -5.34 16 4 C 0.07 0.95 3.75 -25.92 -0.10 0.85 16 5 H 0.08 0.97 7.73 -51.93 -0.40 0.57 16 6 C -0.14 -2.12 6.83 -25.92 -0.18 -2.30 16 7 C 0.06 1.00 2.63 -66.90 -0.18 0.83 16 8 H 0.05 0.95 8.10 -51.93 -0.42 0.52 16 9 N -0.50 -10.22 4.05 -233.91 -0.95 -11.17 16 10 C 0.03 0.57 7.20 60.06 0.43 1.00 16 11 C 0.08 1.85 4.44 -3.82 -0.02 1.83 16 12 C 0.02 0.48 1.29 -155.66 -0.20 0.28 16 13 C -0.49 -12.96 6.95 -34.44 -0.24 -13.20 16 14 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 15 C 0.09 2.46 2.88 -17.82 -0.05 2.41 16 16 N -0.87 -24.43 13.79 55.43 0.76 -23.67 16 17 Si 0.86 21.34 23.84 -169.99 -4.05 17.29 16 18 H -0.28 -6.86 6.44 56.52 0.36 -6.49 16 19 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 20 H -0.26 -6.43 7.11 56.52 0.40 -6.03 16 21 C -0.22 -4.64 9.92 -26.69 -0.26 -4.90 16 22 C -0.17 -3.66 9.96 -26.69 -0.27 -3.93 16 23 C -0.07 -0.99 0.72 -153.69 -0.11 -1.10 16 24 C -0.14 -1.95 9.06 37.16 0.34 -1.62 16 25 C -0.10 -1.65 7.49 37.15 0.28 -1.38 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.10 1.63 7.59 -51.93 -0.39 1.24 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.04 0.80 4.04 -51.93 -0.21 0.59 16 34 H 0.12 3.00 5.37 -51.93 -0.28 2.72 16 35 H 0.02 0.49 5.51 -51.93 -0.29 0.20 16 36 H 0.05 1.02 7.60 -51.93 -0.39 0.63 16 37 H 0.03 0.62 2.68 -51.92 -0.14 0.48 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 41 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 42 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.96 6.89 -51.93 -0.36 0.60 16 45 H 0.05 0.62 8.01 -51.93 -0.42 0.21 16 46 H 0.06 1.10 7.30 -51.93 -0.38 0.72 16 47 H 0.06 1.12 5.84 -51.93 -0.30 0.81 16 48 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 LS Contribution 352.50 15.07 5.31 5.31 Total: -1.00 -27.19 352.50 -7.84 -35.03 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -8.65 Total: 3.90 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: 0.07 Total: -21.36 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: -0.18 Total: -34.84 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.34 Total: -5.34 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.05 Total: 17.29 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.19 -7.84 -35.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602780136.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.543 kcal (2) G-P(sol) polarization free energy of solvation -27.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds