Wall clock time and date at job start Tue Mar 31 2020 06:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.47171 * 2 1 4 4 C 1.42900 * 114.00271 * 180.02562 * 3 2 1 5 5 H 1.09006 * 112.84897 * 341.19468 * 4 3 2 6 6 C 1.53775 * 113.69582 * 112.45866 * 4 3 2 7 7 C 1.53775 * 87.08405 * 139.99292 * 6 4 3 8 8 H 1.09001 * 113.69732 * 220.01406 * 7 6 4 9 9 N 1.46902 * 113.61496 * 89.11885 * 7 6 4 10 10 C 1.46897 * 111.00273 * 185.41143 * 9 7 6 11 11 C 1.46899 * 111.00018 * 61.45461 * 9 7 6 12 12 C 1.53000 * 109.47267 * 199.37814 * 11 9 7 13 13 C 1.50700 * 115.54869 * 54.69239 * 12 11 9 14 14 H 1.08003 * 119.99433 * 264.43818 * 13 12 11 15 15 C 1.37870 * 120.00600 * 84.43619 * 13 12 11 16 16 N 1.31518 * 119.99786 * 357.76463 * 15 13 12 17 17 Si 1.86797 * 120.00357 * 177.75721 * 15 13 12 18 18 H 1.48501 * 109.47175 * 270.00625 * 17 15 13 19 19 H 1.48499 * 109.46871 * 30.00404 * 17 15 13 20 20 H 1.48503 * 109.47136 * 150.00286 * 17 15 13 21 21 C 1.52999 * 117.49673 * 200.35877 * 12 11 9 22 22 C 1.52995 * 117.49839 * 269.01840 * 12 11 9 23 23 C 1.53783 * 87.08361 * 334.57166 * 7 6 4 24 24 C 1.53002 * 113.61753 * 139.97591 * 23 7 6 25 25 C 1.53003 * 113.61231 * 270.80044 * 23 7 6 26 26 H 1.08996 * 109.46849 * 59.99920 * 1 2 3 27 27 H 1.09004 * 109.47004 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46904 * 300.00003 * 1 2 3 29 29 H 1.09000 * 109.47559 * 239.99643 * 2 1 3 30 30 H 1.09005 * 109.47332 * 119.99434 * 2 1 3 31 31 H 1.09008 * 113.60953 * 25.44996 * 6 4 3 32 32 H 1.08999 * 113.62015 * 254.54705 * 6 4 3 33 33 H 1.09002 * 109.47342 * 304.31083 * 10 9 7 34 34 H 1.09009 * 109.47041 * 64.31045 * 10 9 7 35 35 H 1.08995 * 109.47101 * 184.30803 * 10 9 7 36 36 H 1.09001 * 109.46453 * 79.37699 * 11 9 7 37 37 H 1.08999 * 109.47062 * 319.38175 * 11 9 7 38 38 H 0.97001 * 119.99549 * 355.18205 * 16 15 13 39 39 H 1.09006 * 117.49270 * 215.00497 * 21 12 11 40 40 H 1.08995 * 117.50062 * 0.02562 * 21 12 11 41 41 H 1.08999 * 117.50271 * 359.97438 * 22 12 11 42 42 H 1.09004 * 117.49698 * 144.97591 * 22 12 11 43 43 H 1.08998 * 109.46769 * 68.92548 * 24 23 7 44 44 H 1.08996 * 109.46777 * 188.92240 * 24 23 7 45 45 H 1.08994 * 109.47202 * 308.92246 * 24 23 7 46 46 H 1.09004 * 109.47095 * 59.99826 * 25 23 7 47 47 H 1.09001 * 109.46810 * 179.97438 * 25 23 7 48 48 H 1.08990 * 109.47138 * 299.99453 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9281 0.5456 0.3229 6 6 4.0039 2.0454 -1.3021 7 6 4.9911 2.8302 -0.4221 8 1 5.1650 3.8511 -0.7621 9 7 6.2360 2.1025 -0.1414 10 6 7.0791 2.8467 0.8037 11 6 6.9666 1.8112 -1.3820 12 6 7.9618 0.6760 -1.1332 13 6 7.3753 -0.5887 -0.5609 14 1 7.3974 -0.7598 0.5052 15 6 6.8106 -1.5273 -1.3982 16 7 6.7442 -1.2993 -2.6918 17 14 6.1401 -3.1229 -0.6955 18 1 7.2151 -4.1472 -0.6796 19 1 5.6581 -2.8897 0.6897 20 1 5.0139 -3.6001 -1.5377 21 6 9.1299 0.5336 -2.1111 22 6 9.3764 1.0601 -0.6951 23 6 3.9489 2.7252 0.7039 24 6 4.5591 2.4537 2.0805 25 6 2.9424 3.8774 0.7168 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 3.3009 2.6798 -1.8421 32 1 4.4829 1.3034 -1.9408 33 1 7.2672 3.8468 0.4132 34 1 6.5692 2.9216 1.7643 35 1 8.0263 2.3237 0.9351 36 1 7.5051 2.7024 -1.7043 37 1 6.2613 1.5126 -2.1575 38 1 7.0280 -0.4431 -3.0484 39 1 9.4741 -0.4749 -2.3404 40 1 9.1896 1.2489 -2.9314 41 1 9.5984 2.1215 -0.5845 42 1 9.8829 0.3982 0.0075 43 1 5.1134 3.3319 2.4117 44 1 3.7642 2.2355 2.7936 45 1 5.2344 1.6005 2.0168 46 1 2.3995 3.8962 -0.2282 47 1 2.2386 3.7359 1.5370 48 1 3.4718 4.8207 0.8506 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602780139.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:21 Heat of formation + Delta-G solvation = 4.387876 kcal Electronic energy + Delta-G solvation = -24441.593111 eV Core-core repulsion = 21305.375179 eV Total energy + Delta-G solvation = -3136.217932 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.14395 -37.43840 -36.38464 -33.76554 -31.72835 -30.96646 -30.27713 -27.43857 -26.37832 -24.94657 -24.43567 -22.82304 -22.30060 -21.29574 -21.18382 -19.15183 -17.79514 -16.55833 -16.43829 -15.37801 -14.99320 -14.85949 -14.52706 -14.12051 -13.71533 -13.67592 -13.17222 -12.96924 -12.66229 -12.42540 -12.34673 -12.22413 -12.11690 -11.89713 -11.84018 -11.48221 -11.25743 -11.02357 -10.88556 -10.75451 -10.71294 -10.65282 -10.37248 -10.21250 -10.08417 -9.94888 -9.79092 -9.29122 -8.87927 -8.45890 -8.35618 -8.14984 -7.44152 -6.19956 -3.90120 3.46421 3.48685 3.64487 4.03338 4.40212 4.59211 4.85081 4.91476 5.14835 5.23922 5.32740 5.35908 5.44060 5.48140 5.57174 5.63566 5.74175 5.83596 5.87944 5.90137 5.94717 5.99005 6.03691 6.08493 6.11352 6.11469 6.16452 6.19152 6.26345 6.32565 6.35956 6.41466 6.42983 6.53432 6.56442 6.61792 6.73144 6.83275 6.85746 6.92901 7.31130 7.35554 7.68512 7.84911 7.95555 8.43426 8.57754 9.02124 9.80177 11.18583 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013433 B = 0.007737 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.846719 B = 3618.328822 C = 4997.166125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.380 6.380 4 C 0.088 3.912 5 H 0.100 0.900 6 C -0.152 4.152 7 C 0.068 3.932 8 H 0.042 0.958 9 N -0.492 5.492 10 C 0.014 3.986 11 C 0.097 3.903 12 C 0.036 3.964 13 C -0.535 4.535 14 H 0.050 0.950 15 C 0.024 3.976 16 N -0.915 5.915 17 Si 1.060 2.940 18 H -0.291 1.291 19 H -0.289 1.289 20 H -0.287 1.287 21 C -0.182 4.182 22 C -0.201 4.201 23 C -0.073 4.073 24 C -0.136 4.136 25 C -0.115 4.115 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.006 0.994 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.001 0.999 37 H 0.071 0.929 38 H 0.272 0.728 39 H 0.084 0.916 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.044 0.956 45 H 0.080 0.920 46 H 0.058 0.942 47 H 0.056 0.944 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.370 7.389 5.883 11.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.023 4.023 3 O -0.299 6.299 4 C 0.030 3.970 5 H 0.118 0.882 6 C -0.189 4.189 7 C -0.042 4.042 8 H 0.060 0.940 9 N -0.215 5.215 10 C -0.134 4.134 11 C -0.031 4.031 12 C 0.035 3.965 13 C -0.573 4.573 14 H 0.068 0.932 15 C -0.180 4.180 16 N -0.551 5.551 17 Si 0.890 3.110 18 H -0.218 1.218 19 H -0.215 1.215 20 H -0.213 1.213 21 C -0.220 4.220 22 C -0.238 4.238 23 C -0.073 4.073 24 C -0.192 4.192 25 C -0.173 4.173 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.025 0.975 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.019 0.981 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.098 0.902 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.315 5.637 5.679 11.539 hybrid contribution 1.258 2.058 -0.076 2.414 sum -7.056 7.695 5.603 11.849 Atomic orbital electron populations 1.21724 0.94443 1.01797 1.02530 1.22456 0.94804 0.84617 1.00382 1.87839 1.21771 1.25687 1.94647 1.23696 0.79495 0.98011 0.95776 0.88221 1.23537 0.97503 1.00295 0.97614 1.22555 0.90455 0.94878 0.96266 0.94045 1.61600 1.03565 1.43024 1.13296 1.22757 0.98638 0.94740 0.97273 1.21779 0.96028 0.94970 0.90307 1.19083 0.84722 0.95153 0.97507 1.21085 1.40318 1.01552 0.94370 0.93184 1.25557 0.95092 1.02409 0.94910 1.70702 1.45632 1.26477 1.12330 0.83668 0.76724 0.75670 0.74931 1.21794 1.21522 1.21310 1.22770 1.07687 1.00389 0.91200 1.22903 1.04733 0.97902 0.98249 1.22135 0.94816 0.95397 0.94994 1.21902 1.00310 1.02192 0.94839 1.21376 0.97765 0.95883 1.02227 0.92176 0.91516 0.92294 0.93219 0.93575 0.90068 0.89714 0.97544 0.90769 0.90828 0.98065 0.91085 0.91709 0.89790 0.92005 0.92008 0.90406 0.92919 0.93655 0.90154 0.92285 0.92446 0.93383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.28 37.16 0.38 -1.33 16 2 C 0.05 0.80 6.50 37.16 0.24 1.04 16 3 O -0.38 -6.22 9.46 -35.23 -0.33 -6.55 16 4 C 0.09 1.52 3.64 -25.92 -0.09 1.43 16 5 H 0.10 1.97 7.82 -51.93 -0.41 1.57 16 6 C -0.15 -2.70 6.95 -25.92 -0.18 -2.88 16 7 C 0.07 1.16 2.84 -66.90 -0.19 0.97 16 8 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 9 N -0.49 -9.48 3.53 -233.91 -0.83 -10.31 16 10 C 0.01 0.24 8.82 60.06 0.53 0.77 16 11 C 0.10 2.09 4.74 -3.82 -0.02 2.07 16 12 C 0.04 0.86 0.82 -155.66 -0.13 0.73 16 13 C -0.53 -14.23 8.52 -34.44 -0.29 -14.52 16 14 H 0.05 1.38 7.81 -52.48 -0.41 0.97 16 15 C 0.02 0.66 5.41 -17.82 -0.10 0.57 16 16 N -0.92 -26.29 13.48 55.43 0.75 -25.54 16 17 Si 1.06 24.88 29.90 -169.99 -5.08 19.80 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 21 C -0.18 -4.19 8.68 -26.69 -0.23 -4.43 16 22 C -0.20 -4.31 8.46 -26.70 -0.23 -4.53 16 23 C -0.07 -1.12 1.35 -153.69 -0.21 -1.33 16 24 C -0.14 -2.01 7.31 37.16 0.27 -1.73 16 25 C -0.11 -1.55 8.46 37.16 0.31 -1.24 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 1.32 7.66 -51.92 -0.40 0.93 16 32 H 0.08 1.76 6.39 -51.93 -0.33 1.43 16 33 H 0.01 0.10 8.14 -51.93 -0.42 -0.32 16 34 H 0.07 1.15 4.18 -51.92 -0.22 0.93 16 35 H 0.07 1.35 5.90 -51.93 -0.31 1.05 16 36 H 0.00 0.03 7.95 -51.93 -0.41 -0.39 16 37 H 0.07 1.66 5.57 -51.93 -0.29 1.37 16 38 H 0.27 7.77 6.16 -40.82 -0.25 7.51 16 39 H 0.08 2.09 8.14 -51.93 -0.42 1.66 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 41 H 0.06 1.21 7.86 -51.93 -0.41 0.80 16 42 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 43 H 0.05 0.71 6.68 -51.93 -0.35 0.36 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 1.36 6.73 -51.93 -0.35 1.01 16 46 H 0.06 0.81 7.20 -51.93 -0.37 0.44 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 364.18 15.07 5.49 5.49 Total: -1.00 -27.80 364.18 -8.72 -36.52 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -8.79 Total: 5.02 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 0.07 Total: -24.43 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: -0.08 Total: -35.85 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.33 Total: -6.55 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.08 Total: 19.80 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -27.80 -8.72 -36.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602780139.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.911 kcal (2) G-P(sol) polarization free energy of solvation -27.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds