Wall clock time and date at job start Tue Mar 31 2020 06:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99511 * 2 1 4 4 C 1.52994 * 109.47388 * 282.60330 * 3 2 1 5 5 C 1.50701 * 115.55014 * 159.85852 * 4 3 2 6 6 H 1.08001 * 119.99945 * 145.19425 * 5 4 3 7 7 C 1.37878 * 120.00506 * 325.19797 * 5 4 3 8 8 N 1.31512 * 120.00228 * 166.45145 * 7 5 4 9 9 Si 1.86803 * 119.99490 * 346.45178 * 7 5 4 10 10 H 1.48495 * 109.47220 * 95.68948 * 9 7 5 11 11 H 1.48505 * 109.46601 * 215.68929 * 9 7 5 12 12 H 1.48504 * 109.47253 * 335.68576 * 9 7 5 13 13 C 1.53002 * 117.49952 * 14.15653 * 4 3 2 14 14 C 1.52993 * 59.99851 * 252.50842 * 13 4 3 15 15 C 1.46901 * 111.00163 * 123.95195 * 2 1 3 16 16 C 1.53004 * 109.46933 * 75.67177 * 15 2 1 17 17 O 1.42900 * 109.62907 * 296.44241 * 16 15 2 18 18 C 1.50473 * 109.78694 * 56.93111 * 16 15 2 19 19 C 1.54065 * 112.49881 * 213.95336 * 18 16 15 20 20 C 1.54068 * 112.81923 * 318.28736 * 19 18 16 21 21 C 1.50478 * 112.49354 * 318.28188 * 20 19 18 22 22 C 1.54245 * 108.52205 * 94.14824 * 21 20 19 23 23 C 1.45538 * 112.40529 * 280.01190 * 22 21 20 24 24 H 1.08997 * 109.47553 * 285.85678 * 1 2 3 25 25 H 1.09002 * 109.47725 * 45.86424 * 1 2 3 26 26 H 1.09008 * 109.46929 * 165.86365 * 1 2 3 27 27 H 1.09003 * 109.47104 * 42.60890 * 3 2 1 28 28 H 1.09003 * 109.46950 * 162.60057 * 3 2 1 29 29 H 0.97008 * 119.99649 * 180.02562 * 8 7 5 30 30 H 1.09000 * 117.49712 * 359.97438 * 13 4 3 31 31 H 1.08993 * 117.50051 * 145.01524 * 13 4 3 32 32 H 1.09005 * 117.49980 * 252.50655 * 14 13 4 33 33 H 1.09007 * 117.51966 * 107.47853 * 14 13 4 34 34 H 1.09005 * 109.46763 * 315.67645 * 15 2 1 35 35 H 1.08997 * 109.47351 * 195.67727 * 15 2 1 36 36 H 0.96700 * 114.00148 * 294.62261 * 17 16 15 37 37 H 1.08999 * 108.87625 * 334.73203 * 18 16 15 38 38 H 1.09002 * 108.87683 * 93.17461 * 18 16 15 39 39 H 1.08997 * 108.81369 * 197.42071 * 19 18 16 40 40 H 1.09008 * 108.72332 * 79.08696 * 19 18 16 41 41 H 1.08991 * 108.88010 * 197.50547 * 20 19 18 42 42 H 1.09001 * 108.87936 * 79.05613 * 20 19 18 43 43 H 1.09000 * 109.62745 * 334.44172 * 21 20 19 44 44 H 1.08997 * 109.62423 * 213.85893 * 21 20 19 45 45 H 1.09005 * 108.88948 * 159.25998 * 22 21 20 46 46 H 1.08995 * 108.89628 * 40.77318 * 22 21 20 47 47 H 1.09001 * 108.89594 * 301.18455 * 23 22 21 48 48 H 1.09002 * 108.81534 * 182.64408 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.8842 1.9604 -1.4077 5 6 1.9283 3.4646 -1.4882 6 1 2.4028 3.9466 -2.3302 7 6 1.3630 4.2256 -0.4871 8 7 1.6254 5.5121 -0.4111 9 14 0.2245 3.4292 0.7615 10 1 0.9972 3.0697 1.9775 11 1 -0.8554 4.3817 1.1248 12 1 -0.3738 2.2032 0.1746 13 6 0.9966 1.2244 -2.4134 14 6 2.5191 1.1726 -2.5552 15 6 1.9955 -0.7659 1.1376 16 6 1.8450 -2.2627 0.8581 17 8 0.4590 -2.5944 0.7531 18 6 2.5476 -2.6144 -0.4252 19 6 1.8323 -3.7374 -1.2004 20 6 1.3308 -4.8700 -0.2842 21 6 2.3303 -5.2351 0.7797 22 6 1.9965 -4.4405 2.0590 23 6 2.4857 -3.0709 2.0048 24 1 -0.3634 0.2808 0.9885 25 1 -0.3634 0.7156 -0.7375 26 1 -0.3633 -0.9966 -0.2510 27 1 1.4193 1.9817 0.6957 28 1 3.0410 1.3593 0.3073 29 1 1.2279 6.0473 0.2936 30 1 0.4922 0.3204 -2.0722 31 1 0.4443 1.8282 -3.1334 32 1 2.9685 1.7422 -3.3688 33 1 3.0164 0.2348 -2.3073 34 1 1.4393 -0.5069 2.0386 35 1 3.0494 -0.5270 1.2799 36 1 -0.0365 -2.4789 1.5754 37 1 2.5960 -1.7264 -1.0555 38 1 3.5630 -2.9365 -0.1945 39 1 2.5244 -4.1563 -1.9307 40 1 0.9804 -3.3098 -1.7292 41 1 1.1257 -5.7509 -0.8924 42 1 0.4053 -4.5519 0.1957 43 1 3.3346 -4.9796 0.4417 44 1 2.2712 -6.3036 0.9864 45 1 2.4480 -4.9431 2.9144 46 1 0.9149 -4.4241 2.1921 47 1 3.5665 -3.0874 1.8641 48 1 2.2609 -2.5796 2.9515 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602813284.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:46 Heat of formation + Delta-G solvation = -0.381690 kcal Electronic energy + Delta-G solvation = -24667.665987 eV Core-core repulsion = 21531.241231 eV Total energy + Delta-G solvation = -3136.424755 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.14776 -38.01118 -35.49380 -34.24892 -32.45837 -32.16597 -31.51882 -27.61811 -27.22063 -25.44736 -24.60067 -23.49787 -21.32936 -21.05449 -20.34092 -19.29582 -18.87557 -16.64495 -16.32728 -15.87209 -15.69424 -15.17131 -14.80384 -14.51983 -14.18027 -14.07340 -13.28286 -13.15971 -12.91457 -12.80012 -12.69971 -12.52810 -12.16222 -11.97782 -11.86767 -11.45088 -11.18579 -11.00366 -10.84399 -10.73498 -10.64393 -10.40502 -10.38867 -10.29718 -10.18518 -10.03901 -9.58355 -9.44088 -9.14893 -9.00196 -8.67509 -8.22362 -7.59292 -6.14150 -4.05591 3.19794 3.36439 3.39213 4.14176 4.37410 4.45321 4.62964 4.77955 4.85772 4.92146 5.11565 5.15326 5.27680 5.37682 5.40147 5.48648 5.50213 5.59192 5.72865 5.76283 5.87645 5.91945 5.98147 6.03585 6.04136 6.08223 6.12423 6.15276 6.20589 6.26234 6.29790 6.33053 6.51623 6.57094 6.62259 6.66103 6.68440 6.79316 6.83482 7.02773 7.21234 7.43138 7.52973 7.59517 7.77399 7.86361 8.55846 8.92387 9.50544 10.97564 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028488 B = 0.005310 C = 0.004921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.640003 B = 5271.989660 C = 5688.594098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.523 5.523 3 C 0.081 3.919 4 C 0.013 3.987 5 C -0.482 4.482 6 H 0.076 0.924 7 C 0.072 3.928 8 N -0.893 5.893 9 Si 0.882 3.118 10 H -0.293 1.293 11 H -0.306 1.306 12 H -0.239 1.239 13 C -0.209 4.209 14 C -0.179 4.179 15 C 0.028 3.972 16 C 0.153 3.847 17 O -0.539 6.539 18 C -0.106 4.106 19 C -0.095 4.095 20 C -0.119 4.119 21 C -0.114 4.114 22 C -0.110 4.110 23 C -0.146 4.146 24 H 0.008 0.992 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.028 0.972 28 H 0.067 0.933 29 H 0.264 0.736 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.030 0.970 35 H 0.076 0.924 36 H 0.362 0.638 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.044 0.956 40 H 0.061 0.939 41 H 0.041 0.959 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.051 0.949 46 H 0.063 0.937 47 H 0.067 0.933 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.450 -20.428 5.350 21.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.246 5.246 3 C -0.046 4.046 4 C 0.012 3.988 5 C -0.519 4.519 6 H 0.094 0.906 7 C -0.131 4.131 8 N -0.530 5.530 9 Si 0.714 3.286 10 H -0.222 1.222 11 H -0.234 1.234 12 H -0.164 1.164 13 C -0.246 4.246 14 C -0.216 4.216 15 C -0.101 4.101 16 C 0.112 3.888 17 O -0.344 6.344 18 C -0.143 4.143 19 C -0.133 4.133 20 C -0.157 4.157 21 C -0.151 4.151 22 C -0.147 4.147 23 C -0.184 4.184 24 H 0.026 0.974 25 H 0.106 0.894 26 H 0.102 0.898 27 H 0.046 0.954 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.095 0.905 36 H 0.208 0.792 37 H 0.110 0.890 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.100 0.900 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.086 0.914 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.138 -20.589 4.379 21.050 hybrid contribution -0.830 0.437 2.212 2.403 sum -0.968 -20.152 6.592 21.225 Atomic orbital electron populations 1.23068 0.87498 1.03481 0.99766 1.61905 1.08171 1.14146 1.40348 1.22053 0.98479 0.86255 0.97766 1.19243 1.00139 0.93121 0.86306 1.20448 1.36671 0.86693 1.08096 0.90624 1.25037 0.96002 0.94748 0.97275 1.69949 1.42758 1.06665 1.33604 0.87078 0.80789 0.79759 0.80944 1.22162 1.23449 1.16385 1.23347 0.92575 1.02956 1.05762 1.22624 0.95612 1.01006 1.02405 1.22850 1.00569 0.94397 0.92272 1.20879 0.81651 0.91164 0.95140 1.86682 1.20442 1.89410 1.37865 1.21331 0.97118 1.00115 0.95754 1.21534 0.99705 0.94849 0.97198 1.21423 1.00167 0.97107 0.96975 1.21307 0.99850 0.98556 0.95436 1.20346 1.01523 0.95168 0.97694 1.21178 1.01539 0.96669 0.99030 0.97391 0.89412 0.89797 0.95443 0.91492 0.92624 0.89117 0.91096 0.91116 0.90725 0.95225 0.90538 0.79218 0.88956 0.92486 0.93682 0.92048 0.93975 0.89962 0.92149 0.92779 0.93001 0.91866 0.91383 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 6.25 60.06 0.38 0.53 16 2 N -0.52 -9.03 2.60 -242.91 -0.63 -9.66 16 3 C 0.08 1.71 4.47 -3.83 -0.02 1.69 16 4 C 0.01 0.31 1.76 -155.66 -0.27 0.04 16 5 C -0.48 -13.58 9.57 -34.44 -0.33 -13.91 16 6 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 7 C 0.07 2.06 5.41 -17.82 -0.10 1.96 16 8 N -0.89 -27.27 13.96 55.43 0.77 -26.49 16 9 Si 0.88 21.59 24.10 -169.99 -4.10 17.49 16 10 H -0.29 -7.14 6.89 56.52 0.39 -6.75 16 11 H -0.31 -7.70 7.11 56.52 0.40 -7.29 16 12 H -0.24 -5.36 3.29 56.52 0.19 -5.17 16 13 C -0.21 -4.45 8.31 -26.73 -0.22 -4.68 16 14 C -0.18 -3.79 9.79 -26.74 -0.26 -4.05 16 15 C 0.03 0.40 4.21 -3.82 -0.02 0.39 16 16 C 0.15 1.77 0.75 -91.23 -0.07 1.70 16 17 O -0.54 -6.05 5.82 -35.23 -0.21 -6.26 16 18 C -0.11 -1.32 4.76 -27.44 -0.13 -1.45 16 19 C -0.10 -1.13 5.37 -25.62 -0.14 -1.27 16 20 C -0.12 -1.25 5.28 -27.43 -0.14 -1.39 16 21 C -0.11 -1.07 5.61 -27.34 -0.15 -1.22 16 22 C -0.11 -0.98 5.17 -29.60 -0.15 -1.13 16 23 C -0.15 -1.42 4.51 -29.60 -0.13 -1.55 16 24 H 0.01 0.13 7.47 -51.93 -0.39 -0.26 16 25 H 0.09 1.70 3.97 -51.93 -0.21 1.49 16 26 H 0.08 1.29 5.93 -51.92 -0.31 0.99 16 27 H 0.03 0.64 1.76 -51.93 -0.09 0.55 16 28 H 0.07 1.40 7.57 -51.93 -0.39 1.00 16 29 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.09 1.80 4.92 -51.93 -0.26 1.54 16 31 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 32 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.07 1.45 8.01 -51.93 -0.42 1.04 16 34 H 0.03 0.42 7.81 -51.93 -0.41 0.02 16 35 H 0.08 1.09 7.58 -51.93 -0.39 0.70 16 36 H 0.36 3.21 8.81 45.56 0.40 3.61 16 37 H 0.09 1.39 6.63 -51.93 -0.34 1.05 16 38 H 0.06 0.67 6.63 -51.93 -0.34 0.32 16 39 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 41 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.91 5.32 -51.93 -0.28 0.63 16 43 H 0.06 0.59 6.98 -51.93 -0.36 0.23 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.56 6.61 -51.93 -0.34 0.21 16 47 H 0.07 0.67 7.47 -51.93 -0.39 0.28 16 48 H 0.06 0.54 7.97 -51.93 -0.41 0.12 16 LS Contribution 329.81 15.07 4.97 4.97 Total: -1.00 -29.46 329.81 -8.62 -38.08 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.67 Total: 6.22 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -1.76 Total: -24.34 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.14 Total: -36.16 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.21 Total: -6.26 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.10 Total: 17.49 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.46 -8.62 -38.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602813284.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.698 kcal (2) G-P(sol) polarization free energy of solvation -29.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds