Wall clock time and date at job start Tue Mar 31 2020 05:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99774 * 2 1 4 4 C 1.53006 * 109.47091 * 174.97002 * 3 2 1 5 5 N 1.46906 * 109.46636 * 77.55798 * 4 3 2 6 6 C 1.46900 * 110.99524 * 160.00439 * 5 4 3 7 7 C 1.53002 * 109.46834 * 207.67021 * 6 5 4 8 8 C 1.50701 * 115.54758 * 68.17142 * 7 6 5 9 9 H 1.07998 * 119.99961 * 156.56318 * 8 7 6 10 10 C 1.37880 * 120.00190 * 336.56386 * 8 7 6 11 11 N 1.31516 * 119.99893 * 24.43046 * 10 8 7 12 12 Si 1.86791 * 119.99954 * 204.43769 * 10 8 7 13 13 H 1.48503 * 109.47687 * 59.99446 * 12 10 8 14 14 H 1.48502 * 109.47190 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47233 * 299.99500 * 12 10 8 16 16 C 1.53001 * 117.50015 * 282.50048 * 7 6 5 17 17 C 1.53001 * 117.49977 * 213.83997 * 7 6 5 18 18 C 1.46899 * 110.99893 * 283.95193 * 5 4 3 19 19 H 1.08999 * 110.54281 * 208.27364 * 18 5 4 20 20 C 1.54893 * 110.49068 * 330.89594 * 18 5 4 21 21 C 1.54884 * 102.74923 * 156.61873 * 20 18 5 22 22 C 1.54265 * 104.19942 * 322.05145 * 21 20 18 23 23 H 1.08992 * 110.07562 * 264.30911 * 22 21 20 24 24 C 1.52999 * 110.03084 * 142.89278 * 22 21 20 25 25 C 1.53884 * 106.59530 * 23.61464 * 22 21 20 26 26 H 1.08997 * 109.47112 * 184.96651 * 1 2 3 27 27 H 1.09002 * 109.46732 * 304.96561 * 1 2 3 28 28 H 1.08998 * 109.47107 * 64.96477 * 1 2 3 29 29 H 1.09004 * 109.47405 * 54.97608 * 3 2 1 30 30 H 1.08999 * 109.47832 * 294.96996 * 3 2 1 31 31 H 1.09001 * 109.47056 * 317.56069 * 4 3 2 32 32 H 1.08998 * 109.47439 * 197.55308 * 4 3 2 33 33 H 1.08995 * 109.47509 * 327.67241 * 6 5 4 34 34 H 1.09006 * 109.47078 * 87.67838 * 6 5 4 35 35 H 0.96994 * 120.00100 * 184.15411 * 11 10 8 36 36 H 1.08993 * 117.49923 * 0.02562 * 16 7 6 37 37 H 1.09001 * 117.49846 * 145.02111 * 16 7 6 38 38 H 1.09003 * 117.49973 * 214.98007 * 17 7 6 39 39 H 1.09001 * 117.50031 * 359.97438 * 17 7 6 40 40 H 1.09001 * 110.75628 * 38.29835 * 20 18 5 41 41 H 1.09009 * 110.90873 * 275.00603 * 20 18 5 42 42 H 1.09002 * 110.48125 * 203.37631 * 21 20 18 43 43 H 1.09002 * 110.60319 * 80.79434 * 21 20 18 44 44 H 1.08998 * 109.47366 * 302.83959 * 24 22 21 45 45 H 1.08996 * 109.46743 * 62.84223 * 24 22 21 46 46 H 1.09003 * 109.46708 * 182.83662 * 24 22 21 47 47 H 1.09000 * 110.02958 * 119.28023 * 25 22 21 48 48 H 1.08992 * 110.02965 * 240.71733 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5304 1.1870 0.1265 5 7 4.1013 0.8035 -1.1717 6 6 5.5317 1.1318 -1.2353 7 6 5.9327 1.3843 -2.6900 8 6 5.3528 2.6255 -3.3180 9 1 5.8467 3.0853 -4.1612 10 6 4.1918 3.1741 -2.8160 11 7 3.8479 2.9549 -1.5657 12 14 3.1071 4.2286 -3.9118 13 1 2.6512 3.4270 -5.0758 14 1 1.9274 4.6945 -3.1396 15 1 3.8802 5.4022 -4.3915 16 6 6.1304 0.1633 -3.5905 17 6 7.3423 0.9693 -3.1165 18 6 3.8757 -0.6220 -1.4455 19 1 4.6630 -1.0175 -2.0873 20 6 3.8015 -1.4233 -0.1219 21 6 2.9903 -2.6788 -0.5275 22 6 1.9294 -2.1426 -1.5107 23 1 0.9964 -1.9448 -0.9832 24 6 1.6928 -3.1574 -2.6310 25 6 2.4924 -0.8348 -2.0945 26 1 -0.3633 -1.0238 0.0890 27 1 -0.3633 0.5890 0.8422 28 1 -0.3633 0.4349 -0.9311 29 1 1.6192 1.8773 0.8416 30 1 1.7617 1.8139 -0.9316 31 1 3.7751 0.4279 0.8695 32 1 3.9451 2.1461 0.4366 33 1 5.7257 2.0269 -0.6443 34 1 6.1134 0.3003 -0.8372 35 1 3.0021 3.2900 -1.2294 36 1 5.9743 -0.8199 -3.1467 37 1 5.8413 0.2578 -4.6373 38 1 7.8500 1.5938 -3.8516 39 1 7.9841 0.5168 -2.3606 40 1 3.2756 -0.8545 0.6449 41 1 4.7982 -1.7014 0.2209 42 1 2.5116 -3.1220 0.3458 43 1 3.6332 -3.4082 -1.0202 44 1 2.6355 -3.3672 -3.1364 45 1 1.2943 -4.0794 -2.2078 46 1 0.9798 -2.7484 -3.3470 47 1 2.5969 -0.9232 -3.1759 48 1 1.8330 -0.0023 -1.8494 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602822780.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:12 Heat of formation + Delta-G solvation = 43.177748 kcal Electronic energy + Delta-G solvation = -25509.071473 eV Core-core repulsion = 22374.535596 eV Total energy + Delta-G solvation = -3134.535876 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.31474 -36.90759 -36.33892 -34.26177 -32.02944 -29.69909 -29.14584 -27.63853 -26.04465 -25.17989 -24.48263 -23.07728 -21.89345 -20.93536 -19.08060 -18.74060 -18.38207 -16.69286 -15.84680 -15.58876 -15.07352 -14.60954 -14.40713 -14.17076 -13.65229 -13.47359 -13.20482 -12.98798 -12.64105 -12.21894 -11.92570 -11.74798 -11.50705 -11.36754 -11.15836 -10.96374 -10.86932 -10.60967 -10.49583 -10.31656 -10.22001 -10.13905 -10.09987 -9.99782 -9.82906 -9.49173 -9.31436 -9.18422 -8.89081 -8.53873 -8.51525 -7.99592 -6.43678 -5.82986 -3.72946 3.40312 3.43479 3.52670 4.39209 4.56311 4.89203 5.26899 5.35049 5.42119 5.55496 5.56203 5.67068 5.73857 5.80621 5.88145 5.93950 6.01239 6.05824 6.10730 6.20550 6.24350 6.28781 6.31879 6.38073 6.45623 6.53683 6.60746 6.63003 6.67065 6.71988 6.75886 6.78746 6.83654 6.87244 7.03465 7.07795 7.16242 7.22961 7.27752 7.41899 7.43508 7.74568 7.76609 8.04141 8.55331 8.66486 8.81834 9.13343 9.75545 11.08513 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015333 B = 0.008446 C = 0.006960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.740197 B = 3314.286826 C = 4021.803540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.372 6.372 3 C 0.066 3.934 4 C 0.080 3.920 5 N -0.448 5.448 6 C 0.136 3.864 7 C 0.068 3.932 8 C -0.506 4.506 9 H 0.050 0.950 10 C 0.099 3.901 11 N -0.808 5.808 12 Si 0.864 3.136 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.283 1.283 16 C -0.217 4.217 17 C -0.221 4.221 18 C 0.073 3.927 19 H 0.069 0.931 20 C -0.163 4.163 21 C -0.106 4.106 22 C -0.087 4.087 23 H 0.069 0.931 24 C -0.144 4.144 25 C -0.097 4.097 26 H 0.074 0.926 27 H 0.030 0.970 28 H 0.034 0.966 29 H 0.030 0.970 30 H 0.065 0.935 31 H 0.025 0.975 32 H 0.093 0.907 33 H 0.075 0.925 34 H -0.016 1.016 35 H 0.252 0.748 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.097 0.903 41 H 0.039 0.961 42 H 0.046 0.954 43 H 0.048 0.952 44 H 0.049 0.951 45 H 0.041 0.959 46 H 0.047 0.953 47 H 0.039 0.961 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.518 -7.180 5.292 10.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.291 6.291 3 C -0.011 4.011 4 C -0.049 4.049 5 N -0.169 5.169 6 C 0.009 3.991 7 C 0.067 3.933 8 C -0.541 4.541 9 H 0.069 0.931 10 C -0.109 4.109 11 N -0.441 5.441 12 Si 0.692 3.308 13 H -0.206 1.206 14 H -0.218 1.218 15 H -0.209 1.209 16 C -0.255 4.255 17 C -0.259 4.259 18 C -0.036 4.036 19 H 0.087 0.913 20 C -0.201 4.201 21 C -0.144 4.144 22 C -0.106 4.106 23 H 0.087 0.913 24 C -0.202 4.202 25 C -0.135 4.135 26 H 0.093 0.907 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.002 0.998 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.115 0.885 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.766 -6.943 5.111 10.372 hybrid contribution -0.482 0.088 -0.302 0.576 sum -6.248 -6.855 4.808 10.448 Atomic orbital electron populations 1.22579 0.83717 1.01274 0.99293 1.88191 1.17396 1.28849 1.94708 1.22804 0.95061 0.83495 0.99711 1.22099 0.91588 1.00210 0.90960 1.62320 1.14883 1.11103 1.28575 1.21129 0.85978 0.96338 0.95671 1.19034 0.90286 0.92503 0.91501 1.20175 1.09592 1.09342 1.15015 0.93135 1.24656 0.97307 0.94900 0.94002 1.70407 1.20924 1.40478 1.12324 0.87162 0.80646 0.80783 0.82221 1.20628 1.21784 1.20907 1.23080 1.04811 0.96875 1.00754 1.22917 0.92786 1.06216 1.03966 1.22832 0.97010 0.89610 0.94178 0.91285 1.23374 0.98275 0.97044 1.01414 1.22189 0.97217 0.97130 0.97838 1.21700 0.98703 0.95135 0.95026 0.91251 1.21937 1.00976 0.98530 0.98743 1.22251 0.97306 0.96638 0.97320 0.90717 0.95127 0.94715 0.95219 0.91737 0.95794 0.88903 0.90683 0.99824 0.93587 0.91872 0.91073 0.90977 0.91980 0.88544 0.94173 0.93475 0.93281 0.93144 0.93970 0.93421 0.94201 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.83 101.05 0.99 1.36 16 2 O -0.37 -5.92 3.78 -35.23 -0.13 -6.05 16 3 C 0.07 1.14 4.74 37.16 0.18 1.31 16 4 C 0.08 1.51 3.95 -3.82 -0.02 1.49 16 5 N -0.45 -9.42 2.17 -224.65 -0.49 -9.91 16 6 C 0.14 3.10 4.03 -3.82 -0.02 3.09 16 7 C 0.07 1.65 2.20 -155.66 -0.34 1.31 16 8 C -0.51 -13.55 9.05 -34.44 -0.31 -13.87 16 9 H 0.05 1.40 7.93 -52.49 -0.42 0.99 16 10 C 0.10 2.53 5.21 -17.82 -0.09 2.44 16 11 N -0.81 -19.54 5.83 55.43 0.32 -19.22 16 12 Si 0.86 20.47 29.61 -169.99 -5.03 15.43 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 C -0.22 -4.95 9.22 -26.69 -0.25 -5.19 16 17 C -0.22 -4.94 9.91 -26.69 -0.26 -5.20 16 18 C 0.07 1.42 2.61 -66.05 -0.17 1.25 16 19 H 0.07 1.47 4.84 -51.93 -0.25 1.22 16 20 C -0.16 -2.81 5.13 -24.74 -0.13 -2.93 16 21 C -0.11 -1.63 6.35 -25.08 -0.16 -1.79 16 22 C -0.09 -1.35 2.73 -89.50 -0.24 -1.59 16 23 H 0.07 1.04 5.13 -51.93 -0.27 0.78 16 24 C -0.14 -2.02 8.85 37.16 0.33 -1.69 16 25 C -0.10 -1.81 5.28 -25.60 -0.14 -1.94 16 26 H 0.07 0.85 7.22 -51.93 -0.37 0.48 16 27 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 30 H 0.06 1.27 6.24 -51.93 -0.32 0.95 16 31 H 0.02 0.45 4.98 -51.93 -0.26 0.19 16 32 H 0.09 1.87 6.39 -51.93 -0.33 1.54 16 33 H 0.07 1.81 6.74 -51.93 -0.35 1.46 16 34 H -0.02 -0.36 7.80 -51.93 -0.41 -0.76 16 35 H 0.25 5.89 6.48 -40.82 -0.26 5.63 16 36 H 0.06 1.37 6.06 -51.93 -0.31 1.06 16 37 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 38 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.10 1.70 3.73 -51.93 -0.19 1.50 16 41 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.74 7.83 -51.93 -0.41 0.34 16 44 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 45 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.04 0.79 7.67 -51.93 -0.40 0.39 16 48 H 0.09 1.68 4.30 -51.93 -0.22 1.46 16 LS Contribution 334.62 15.07 5.04 5.04 Total: -1.00 -25.14 334.62 -9.14 -34.28 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -8.22 Total: 2.38 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -0.63 Total: -21.95 kcal Atomic # 7 Polarization: -28.97 SS G_CDS: -0.17 Total: -29.13 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.13 Total: -6.05 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.43 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -25.14 -9.14 -34.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602822780.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.455 kcal (2) G-P(sol) polarization free energy of solvation -25.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds