Wall clock time and date at job start Tue Mar 31 2020 05:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42906 * 113.99871 * 2 1 4 4 C 1.52995 * 109.47199 * 175.03800 * 3 2 1 5 5 N 1.46905 * 109.46857 * 67.29518 * 4 3 2 6 6 C 1.46900 * 111.00234 * 291.26985 * 5 4 3 7 7 C 1.53002 * 109.46726 * 300.10585 * 6 5 4 8 8 C 1.50703 * 115.55097 * 281.69884 * 7 6 5 9 9 H 1.07992 * 120.00105 * 144.67903 * 8 7 6 10 10 C 1.37883 * 119.99783 * 324.68386 * 8 7 6 11 11 N 1.31509 * 119.99832 * 348.88554 * 10 8 7 12 12 Si 1.86793 * 119.99866 * 168.88886 * 10 8 7 13 13 H 1.48507 * 109.47410 * 59.99652 * 12 10 8 14 14 H 1.48500 * 109.47209 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47499 * 299.99797 * 12 10 8 16 16 C 1.52994 * 117.49650 * 135.99644 * 7 6 5 17 17 C 1.52996 * 117.50242 * 67.37131 * 7 6 5 18 18 C 1.46898 * 110.99896 * 167.31125 * 5 4 3 19 19 H 1.09000 * 110.01516 * 64.01916 * 18 5 4 20 20 C 1.53874 * 110.03268 * 185.40603 * 18 5 4 21 21 C 1.54273 * 106.59579 * 119.28678 * 20 18 5 22 22 C 1.54887 * 104.19495 * 23.61731 * 21 20 18 23 23 H 1.09000 * 110.76116 * 80.55118 * 22 21 20 24 24 C 1.52998 * 110.75606 * 203.74130 * 22 21 20 25 25 C 1.54268 * 110.03600 * 302.57943 * 18 5 4 26 26 H 1.09001 * 109.46983 * 304.94992 * 1 2 3 27 27 H 1.08997 * 109.47100 * 64.94980 * 1 2 3 28 28 H 1.08998 * 109.46678 * 184.95146 * 1 2 3 29 29 H 1.09000 * 109.47121 * 295.04051 * 3 2 1 30 30 H 1.09002 * 109.47415 * 55.04115 * 3 2 1 31 31 H 1.09003 * 109.47335 * 187.29486 * 4 3 2 32 32 H 1.08999 * 109.47441 * 307.29775 * 4 3 2 33 33 H 1.08992 * 109.46834 * 60.10393 * 6 5 4 34 34 H 1.08997 * 109.47265 * 180.10604 * 6 5 4 35 35 H 0.97005 * 120.00124 * 185.11712 * 11 10 8 36 36 H 1.09004 * 117.50280 * 359.97438 * 16 7 6 37 37 H 1.09002 * 117.50081 * 145.02126 * 16 7 6 38 38 H 1.08996 * 117.50379 * 214.97797 * 17 7 6 39 39 H 1.09006 * 117.49846 * 359.97438 * 17 7 6 40 40 H 1.08998 * 110.03609 * 238.57321 * 20 18 5 41 41 H 1.08993 * 110.03175 * 0.02562 * 20 18 5 42 42 H 1.09000 * 110.48235 * 142.28948 * 21 20 18 43 43 H 1.08995 * 110.48792 * 264.79949 * 21 20 18 44 44 H 1.09011 * 109.47278 * 58.54023 * 24 22 21 45 45 H 1.08998 * 109.47599 * 178.53844 * 24 22 21 46 46 H 1.08999 * 109.46937 * 298.54419 * 24 22 21 47 47 H 1.08998 * 110.48665 * 335.78090 * 25 18 5 48 48 H 1.08993 * 110.48919 * 98.42896 * 25 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5305 1.1870 0.1248 5 7 4.0752 0.5714 -1.0928 6 6 3.6779 -0.8393 -1.1926 7 6 4.2035 -1.6043 0.0238 8 6 5.6654 -1.9679 -0.0189 9 1 6.2493 -1.9650 0.8895 10 6 6.2574 -2.3041 -1.2179 11 7 5.5135 -2.5212 -2.2805 12 14 8.1159 -2.4513 -1.3330 13 1 8.5887 -3.4993 -0.3930 14 1 8.4983 -2.8214 -2.7193 15 1 8.7385 -1.1507 -0.9778 16 6 3.2502 -2.5876 0.7058 17 6 3.5999 -1.2633 1.3877 18 6 5.5365 0.7119 -1.1453 19 1 5.9936 0.1653 -0.3204 20 6 6.0691 0.1818 -2.4881 21 6 6.7648 1.3690 -3.1857 22 6 7.1433 2.3226 -2.0253 23 1 8.0568 1.9888 -1.5332 24 6 7.2961 3.7584 -2.5313 25 6 5.9271 2.2025 -1.0736 26 1 -0.3633 0.5887 0.8423 27 1 -0.3633 0.4351 -0.9310 28 1 -0.3632 -1.0238 0.0887 29 1 1.7607 1.8144 -0.9311 30 1 1.6201 1.8770 0.8422 31 1 3.9629 2.1791 0.2550 32 1 3.7771 0.5671 0.9868 33 1 2.5907 -0.9092 -1.2238 34 1 4.0960 -1.2711 -2.1018 35 1 5.9226 -2.8297 -3.1042 36 1 2.2485 -2.6892 0.2883 37 1 3.6803 -3.4978 1.1238 38 1 4.2600 -1.3023 2.2542 39 1 2.8287 -0.4937 1.4186 40 1 6.7854 -0.6213 -2.3149 41 1 5.2433 -0.1792 -3.1010 42 1 7.6591 1.0325 -3.7100 43 1 6.0800 1.8595 -3.8774 44 1 6.3624 4.0829 -2.9910 45 1 7.5366 4.4148 -1.6950 46 1 8.0979 3.8004 -3.2685 47 1 5.1063 2.8292 -1.4225 48 1 6.2102 2.4743 -0.0568 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602822781.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:15 Heat of formation + Delta-G solvation = 7.338990 kcal Electronic energy + Delta-G solvation = -25247.423469 eV Core-core repulsion = 22111.333507 eV Total energy + Delta-G solvation = -3136.089962 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.19568 -37.40400 -36.27121 -33.67286 -32.59056 -30.19510 -28.65720 -27.77156 -26.04697 -25.53568 -24.21646 -23.45600 -21.50012 -20.53119 -19.53283 -19.11368 -17.95794 -16.23111 -16.01263 -15.78029 -15.36349 -14.74196 -14.39499 -14.20506 -13.79450 -13.56506 -13.17510 -12.80263 -12.77585 -12.48828 -11.90078 -11.84712 -11.62637 -11.29500 -11.20602 -11.14511 -10.93765 -10.76154 -10.46610 -10.27349 -10.20953 -10.10437 -10.06868 -9.97404 -9.76890 -9.54938 -9.33450 -9.15288 -8.98670 -8.65375 -8.48226 -7.81682 -6.82710 -5.93007 -3.96871 3.26767 3.31910 3.36505 4.27650 4.36095 4.99245 5.08920 5.20585 5.38094 5.42937 5.49683 5.61790 5.68753 5.77871 5.88187 5.93185 5.94472 5.95543 6.01986 6.08543 6.19259 6.25408 6.29396 6.40588 6.42875 6.45201 6.60889 6.67975 6.72551 6.74352 6.78228 6.93377 6.97102 7.00761 7.13826 7.20038 7.29126 7.44656 7.52062 7.56592 7.65212 7.70398 7.78609 8.24115 8.41056 8.54488 8.73028 8.95334 9.55268 11.00012 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013847 B = 0.009300 C = 0.006302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.602453 B = 3010.096881 C = 4442.016864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.069 3.931 4 C 0.016 3.984 5 N -0.518 5.518 6 C 0.058 3.942 7 C 0.032 3.968 8 C -0.482 4.482 9 H 0.052 0.948 10 C 0.081 3.919 11 N -0.871 5.871 12 Si 0.873 3.127 13 H -0.282 1.282 14 H -0.283 1.283 15 H -0.271 1.271 16 C -0.197 4.197 17 C -0.223 4.223 18 C 0.083 3.917 19 H 0.078 0.922 20 C -0.102 4.102 21 C -0.123 4.123 22 C -0.099 4.099 23 H 0.067 0.933 24 C -0.139 4.139 25 C -0.116 4.116 26 H 0.031 0.969 27 H 0.034 0.966 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.037 0.963 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.137 0.863 35 H 0.262 0.738 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.047 0.953 43 H 0.057 0.943 44 H 0.052 0.948 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.065 0.935 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.364 9.198 0.552 9.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.280 6.280 3 C -0.008 4.008 4 C -0.113 4.113 5 N -0.241 5.241 6 C -0.068 4.068 7 C 0.031 3.969 8 C -0.519 4.519 9 H 0.070 0.930 10 C -0.120 4.120 11 N -0.509 5.509 12 Si 0.701 3.299 13 H -0.208 1.208 14 H -0.209 1.209 15 H -0.197 1.197 16 C -0.236 4.236 17 C -0.260 4.260 18 C -0.025 4.025 19 H 0.096 0.904 20 C -0.139 4.139 21 C -0.161 4.161 22 C -0.118 4.118 23 H 0.085 0.915 24 C -0.196 4.196 25 C -0.154 4.154 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.154 0.846 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.115 0.885 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.084 0.916 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.422 9.291 -0.099 9.902 hybrid contribution 1.072 -0.384 0.849 1.421 sum -2.350 8.908 0.750 9.243 Atomic orbital electron populations 1.22678 0.83352 1.01995 0.98988 1.88243 1.17704 1.27401 1.94644 1.22556 0.94714 0.84645 0.98878 1.22769 0.91766 0.99937 0.96781 1.62717 1.09865 1.17746 1.33752 1.22577 0.98524 0.84000 1.01689 1.19599 0.92434 0.95750 0.89151 1.20514 0.92724 1.45517 0.93147 0.92960 1.24766 0.97119 0.94539 0.95583 1.69624 1.34245 1.44593 1.02438 0.87040 0.86855 0.78682 0.77351 1.20780 1.20884 1.19651 1.22765 1.00072 0.92480 1.08243 1.23256 1.04634 0.99664 0.98447 1.22315 0.88395 0.92671 0.99152 0.90404 1.22411 1.00220 0.95599 0.95688 1.22516 0.99250 0.97320 0.96999 1.22055 0.98342 0.94469 0.96897 0.91456 1.21742 1.01104 0.96521 1.00221 1.22593 0.96785 0.98393 0.97623 0.95033 0.94760 0.90301 0.93435 0.94529 0.91653 0.90207 0.91919 0.84609 0.92662 0.91807 0.91778 0.92308 0.88459 0.91227 0.90326 0.93382 0.92446 0.92882 0.93407 0.93392 0.91615 0.93296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.48 16 2 O -0.36 -6.35 5.37 -35.23 -0.19 -6.53 16 3 C 0.07 1.12 5.89 37.16 0.22 1.34 16 4 C 0.02 0.28 4.91 -3.82 -0.02 0.27 16 5 N -0.52 -10.69 4.46 -225.31 -1.00 -11.69 16 6 C 0.06 1.36 4.61 -3.82 -0.02 1.34 16 7 C 0.03 0.78 1.49 -155.66 -0.23 0.55 16 8 C -0.48 -12.64 6.50 -34.44 -0.22 -12.87 16 9 H 0.05 1.42 7.84 -52.49 -0.41 1.01 16 10 C 0.08 2.08 2.91 -17.82 -0.05 2.03 16 11 N -0.87 -22.65 8.93 55.43 0.49 -22.15 16 12 Si 0.87 20.44 27.30 -169.99 -4.64 15.80 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 16 C -0.20 -4.65 9.88 -26.73 -0.26 -4.91 16 17 C -0.22 -4.96 7.29 -26.73 -0.19 -5.15 16 18 C 0.08 1.72 1.99 -66.60 -0.13 1.59 16 19 H 0.08 1.87 5.34 -51.93 -0.28 1.59 16 20 C -0.10 -2.16 4.22 -25.61 -0.11 -2.26 16 21 C -0.12 -2.19 6.27 -25.07 -0.16 -2.35 16 22 C -0.10 -1.62 3.50 -88.62 -0.31 -1.93 16 23 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 24 C -0.14 -1.85 9.27 37.16 0.34 -1.50 16 25 C -0.12 -2.02 4.42 -25.07 -0.11 -2.13 16 26 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 27 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.04 0.51 8.12 -51.93 -0.42 0.09 16 31 H 0.07 1.09 6.41 -51.93 -0.33 0.76 16 32 H 0.08 1.61 3.65 -51.93 -0.19 1.42 16 33 H 0.06 1.48 5.12 -51.93 -0.27 1.21 16 34 H 0.14 3.52 3.42 -51.93 -0.18 3.34 16 35 H 0.26 6.64 8.32 -40.82 -0.34 6.30 16 36 H 0.06 1.46 8.10 -51.93 -0.42 1.04 16 37 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.10 2.02 3.76 -51.93 -0.20 1.83 16 40 H 0.07 1.60 2.88 -51.93 -0.15 1.45 16 41 H 0.08 1.81 6.21 -51.93 -0.32 1.49 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.97 8.05 -51.93 -0.42 0.55 16 44 H 0.05 0.69 8.12 -51.92 -0.42 0.27 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 1.11 7.56 -51.93 -0.39 0.72 16 48 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 LS Contribution 333.97 15.07 5.03 5.03 Total: -1.00 -25.97 333.97 -8.63 -34.60 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -8.18 Total: 9.45 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: -0.15 Total: -24.51 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: -0.51 Total: -33.84 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.19 Total: -6.53 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.64 Total: 15.80 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -25.97 -8.63 -34.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602822781.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.940 kcal (2) G-P(sol) polarization free energy of solvation -25.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds