Wall clock time and date at job start Tue Mar 31 2020 05:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 114.00035 * 2 1 4 4 C 1.52998 * 109.47119 * 177.25249 * 3 2 1 5 5 N 1.46898 * 109.47062 * 85.29796 * 4 3 2 6 6 C 1.46904 * 111.00098 * 166.58292 * 5 4 3 7 7 C 1.52998 * 109.47305 * 201.12252 * 6 5 4 8 8 C 1.50692 * 115.55024 * 55.23203 * 7 6 5 9 9 H 1.08002 * 120.00441 * 218.69304 * 8 7 6 10 10 C 1.37885 * 120.00079 * 38.69521 * 8 7 6 11 11 N 1.31517 * 120.00018 * 194.41283 * 10 8 7 12 12 Si 1.86799 * 119.99744 * 14.40756 * 10 8 7 13 13 H 1.48505 * 109.47296 * 268.10927 * 12 10 8 14 14 H 1.48500 * 109.47235 * 28.10987 * 12 10 8 15 15 H 1.48504 * 109.46819 * 148.11112 * 12 10 8 16 16 C 1.52998 * 117.51542 * 200.93594 * 7 6 5 17 17 C 1.52999 * 60.00101 * 107.47947 * 16 7 6 18 18 C 1.46901 * 110.99901 * 290.53283 * 5 4 3 19 19 H 1.09001 * 110.67506 * 206.87440 * 18 5 4 20 20 C 1.54889 * 110.75462 * 83.44215 * 18 5 4 21 21 C 1.54262 * 104.19629 * 203.74344 * 20 18 5 22 22 C 1.53873 * 106.60194 * 23.60787 * 21 20 18 23 23 H 1.08996 * 110.07545 * 240.69569 * 22 21 20 24 24 C 1.53000 * 110.03584 * 119.28411 * 22 21 20 25 25 C 1.54266 * 106.59397 * 0.02562 * 22 21 20 26 26 H 1.09000 * 109.47280 * 59.99817 * 1 2 3 27 27 H 1.09001 * 109.46822 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47202 * 299.99714 * 1 2 3 29 29 H 1.09000 * 109.46767 * 57.25402 * 3 2 1 30 30 H 1.08993 * 109.47058 * 297.25286 * 3 2 1 31 31 H 1.09003 * 109.47179 * 325.29786 * 4 3 2 32 32 H 1.08992 * 109.46814 * 205.29732 * 4 3 2 33 33 H 1.09004 * 109.46952 * 81.11553 * 6 5 4 34 34 H 1.08998 * 109.46792 * 321.12280 * 6 5 4 35 35 H 0.96995 * 119.99870 * 174.99180 * 11 10 8 36 36 H 1.09000 * 117.49275 * 214.96875 * 16 7 6 37 37 H 1.09002 * 117.50279 * 359.97438 * 16 7 6 38 38 H 1.09000 * 117.50197 * 252.50901 * 17 16 7 39 39 H 1.09006 * 117.50072 * 107.48412 * 17 16 7 40 40 H 1.09002 * 110.48874 * 322.41978 * 20 18 5 41 41 H 1.09004 * 110.48992 * 85.06457 * 20 18 5 42 42 H 1.09006 * 110.03387 * 264.32226 * 21 20 18 43 43 H 1.09000 * 110.03901 * 142.89424 * 21 20 18 44 44 H 1.09003 * 109.47250 * 302.83812 * 24 22 21 45 45 H 1.09001 * 109.46947 * 62.83494 * 24 22 21 46 46 H 1.08994 * 109.47597 * 182.83613 * 24 22 21 47 47 H 1.08999 * 110.48425 * 217.71113 * 25 22 21 48 48 H 1.09004 * 110.60090 * 95.12569 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5340 1.1853 0.0691 5 7 4.0730 1.0068 -1.2856 6 6 5.5286 1.2047 -1.3034 7 6 5.9811 1.5350 -2.7271 8 6 5.2942 2.7117 -3.3709 9 1 5.0353 2.6788 -4.4189 10 6 4.9964 3.8304 -2.6220 11 7 4.1590 4.7306 -3.0891 12 14 5.7821 4.0673 -0.9439 13 1 4.9012 3.4873 0.1015 14 1 7.1009 3.3854 -0.9141 15 1 5.9687 5.5177 -0.6851 16 6 7.4526 1.2995 -3.0736 17 6 6.3764 0.3661 -3.6318 18 6 3.7144 -0.3115 -1.8254 19 1 4.4499 -0.6397 -2.5599 20 6 2.2930 -0.2847 -2.4403 21 6 1.8310 -1.7556 -2.3895 22 6 2.6456 -2.4340 -1.2742 23 1 3.2383 -3.2501 -1.6874 24 6 1.7073 -2.9654 -0.1888 25 6 3.5739 -1.3514 -0.6859 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6502 1.8635 0.8644 30 1 1.7282 1.8288 -0.9135 31 1 3.8032 0.3261 0.6835 32 1 3.9502 2.0914 0.5093 33 1 6.0232 0.2934 -0.9670 34 1 5.7915 2.0274 -0.6385 35 1 3.8932 5.4801 -2.5337 36 1 7.9238 1.9958 -3.7673 37 1 8.0988 0.9096 -2.2872 38 1 6.3145 -0.6382 -3.2125 39 1 6.1397 0.4483 -4.6926 40 1 1.6313 0.3439 -1.8444 41 1 2.3298 0.0682 -3.4710 42 1 2.0282 -2.2422 -3.3447 43 1 0.7671 -1.8051 -2.1575 44 1 1.1019 -2.1469 0.2007 45 1 1.0558 -3.7289 -0.6138 46 1 2.2957 -3.3989 0.6198 47 1 4.5459 -1.7769 -0.4363 48 1 3.1210 -0.8949 0.1943 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602822782.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:17 Heat of formation + Delta-G solvation = 16.661934 kcal Electronic energy + Delta-G solvation = -25229.473998 eV Core-core repulsion = 22093.788310 eV Total energy + Delta-G solvation = -3135.685688 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.79171 -37.30351 -36.55315 -34.66352 -31.99379 -30.25457 -29.54022 -27.90497 -26.41182 -25.53907 -24.78201 -23.52263 -22.00437 -21.23032 -19.37528 -18.94423 -18.83034 -16.68584 -16.32086 -15.86347 -15.47166 -15.38595 -14.60496 -14.39022 -14.25093 -13.69403 -13.08639 -13.03678 -12.86044 -12.56540 -12.47041 -12.14288 -11.93651 -11.86796 -11.69319 -11.25495 -11.05706 -10.71915 -10.68582 -10.57251 -10.49761 -10.35673 -10.18157 -10.15224 -9.72542 -9.63284 -9.51408 -9.31414 -9.27177 -8.99864 -8.53565 -8.18284 -7.30446 -5.95620 -3.85034 3.24905 3.44300 3.46021 4.00448 4.47931 4.52170 4.98355 5.08615 5.18946 5.26836 5.35756 5.46121 5.51323 5.58316 5.60706 5.67706 5.73876 5.78791 5.80505 5.87717 5.95485 5.98232 6.01164 6.09277 6.11797 6.16298 6.23125 6.28964 6.31812 6.38465 6.42517 6.51493 6.55009 6.58794 6.61888 6.67730 6.81466 6.97023 6.98635 7.03974 7.15799 7.23398 7.43055 7.86669 7.93860 8.06574 8.67489 9.07395 9.71413 11.16216 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019112 B = 0.007480 C = 0.006381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.662305 B = 3742.472235 C = 4386.972183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.370 6.370 3 C 0.060 3.940 4 C 0.036 3.964 5 N -0.494 5.494 6 C 0.087 3.913 7 C 0.024 3.976 8 C -0.459 4.459 9 H 0.071 0.929 10 C 0.094 3.906 11 N -0.895 5.895 12 Si 0.880 3.120 13 H -0.272 1.272 14 H -0.270 1.270 15 H -0.305 1.305 16 C -0.214 4.214 17 C -0.190 4.190 18 C 0.090 3.910 19 H 0.082 0.918 20 C -0.115 4.115 21 C -0.109 4.109 22 C -0.080 4.080 23 H 0.053 0.947 24 C -0.144 4.144 25 C -0.160 4.160 26 H 0.041 0.959 27 H 0.080 0.920 28 H 0.033 0.967 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.017 0.983 34 H 0.059 0.941 35 H 0.261 0.739 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.054 0.946 44 H 0.071 0.929 45 H 0.040 0.960 46 H 0.041 0.959 47 H 0.040 0.960 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.740 -11.502 7.674 14.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.290 6.290 3 C -0.017 4.017 4 C -0.092 4.092 5 N -0.216 5.216 6 C -0.040 4.040 7 C 0.023 3.977 8 C -0.496 4.496 9 H 0.089 0.911 10 C -0.109 4.109 11 N -0.532 5.532 12 Si 0.713 3.287 13 H -0.200 1.200 14 H -0.196 1.196 15 H -0.234 1.234 16 C -0.253 4.253 17 C -0.228 4.228 18 C -0.018 4.018 19 H 0.100 0.900 20 C -0.152 4.152 21 C -0.148 4.148 22 C -0.099 4.099 23 H 0.071 0.929 24 C -0.201 4.201 25 C -0.198 4.198 26 H 0.059 0.941 27 H 0.099 0.901 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.035 0.965 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.884 -11.071 7.369 14.543 hybrid contribution 0.663 -0.275 1.390 1.564 sum -5.221 -11.346 8.758 15.254 Atomic orbital electron populations 1.22693 0.82904 1.01938 0.99724 1.88131 1.18180 1.27820 1.94837 1.22624 0.93698 0.84553 1.00800 1.22548 0.93382 1.01454 0.91794 1.61907 1.11571 1.29026 1.19066 1.21851 0.87054 0.97473 0.97647 1.19295 0.91646 0.95687 0.91070 1.20068 1.36442 0.95955 0.97137 0.91096 1.24748 0.93809 0.95408 0.96903 1.69901 1.31926 1.14138 1.37276 0.87112 0.80573 0.75225 0.85752 1.20023 1.19582 1.23389 1.23153 0.94436 1.04106 1.03596 1.22765 1.06445 0.93957 0.99605 1.22660 0.97424 0.86358 0.95405 0.89952 1.22605 0.96683 0.95236 1.00700 1.22080 0.98850 0.96746 0.97075 1.21435 0.96162 0.96758 0.95511 0.92884 1.21980 0.99300 1.00624 0.98209 1.23385 0.97819 0.97007 1.01612 0.94081 0.90115 0.94814 0.93904 0.90904 0.93345 0.89701 0.96480 0.92338 0.92913 0.89753 0.91863 0.91426 0.90130 0.89248 0.92604 0.93340 0.92719 0.91043 0.94089 0.93962 0.94081 0.87791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.05 101.05 1.02 1.28 16 2 O -0.37 -5.05 3.22 -35.23 -0.11 -5.17 16 3 C 0.06 0.93 5.19 37.16 0.19 1.12 16 4 C 0.04 0.63 5.17 -3.83 -0.02 0.61 16 5 N -0.49 -9.92 4.04 -224.26 -0.91 -10.83 16 6 C 0.09 1.86 3.78 -3.82 -0.01 1.85 16 7 C 0.02 0.57 1.20 -155.67 -0.19 0.39 16 8 C -0.46 -12.75 9.23 -34.44 -0.32 -13.06 16 9 H 0.07 2.18 8.06 -52.49 -0.42 1.75 16 10 C 0.09 2.64 5.40 -17.82 -0.10 2.54 16 11 N -0.89 -26.81 13.95 55.43 0.77 -26.04 16 12 Si 0.88 21.56 24.12 -169.99 -4.10 17.46 16 13 H -0.27 -6.14 4.53 56.52 0.26 -5.89 16 14 H -0.27 -6.51 6.98 56.52 0.39 -6.11 16 15 H -0.31 -7.68 7.11 56.52 0.40 -7.28 16 16 C -0.21 -4.62 9.96 -26.73 -0.27 -4.89 16 17 C -0.19 -3.98 8.69 -26.73 -0.23 -4.21 16 18 C 0.09 1.62 2.72 -65.71 -0.18 1.44 16 19 H 0.08 1.60 5.31 -51.93 -0.28 1.32 16 20 C -0.11 -1.95 5.76 -25.07 -0.14 -2.09 16 21 C -0.11 -1.54 6.07 -25.62 -0.16 -1.70 16 22 C -0.08 -1.09 3.28 -89.50 -0.29 -1.38 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 24 C -0.14 -1.70 8.76 37.16 0.33 -1.38 16 25 C -0.16 -2.47 4.54 -25.06 -0.11 -2.58 16 26 H 0.04 0.46 7.89 -51.93 -0.41 0.05 16 27 H 0.08 0.77 6.75 -51.93 -0.35 0.42 16 28 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.30 6.98 -51.93 -0.36 0.93 16 31 H 0.05 0.80 5.45 -51.93 -0.28 0.51 16 32 H 0.08 1.59 5.38 -51.93 -0.28 1.31 16 33 H 0.02 0.34 7.93 -51.93 -0.41 -0.07 16 34 H 0.06 1.31 2.65 -51.93 -0.14 1.17 16 35 H 0.26 7.40 8.32 -40.82 -0.34 7.06 16 36 H 0.08 1.85 8.14 -51.93 -0.42 1.42 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.07 1.29 7.22 -51.93 -0.37 0.91 16 39 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 40 H 0.09 1.51 2.85 -51.93 -0.15 1.36 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.71 7.67 -51.93 -0.40 0.31 16 44 H 0.07 0.84 4.14 -51.93 -0.21 0.63 16 45 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.10 1.61 2.97 -51.93 -0.15 1.46 16 LS Contribution 332.86 15.07 5.02 5.02 Total: -1.00 -28.72 332.86 -7.98 -36.70 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -8.16 Total: 4.93 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -0.49 Total: -22.07 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: -0.13 Total: -36.87 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.11 Total: -5.17 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.10 Total: 17.46 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.72 -7.98 -36.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602822782.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.359 kcal (2) G-P(sol) polarization free energy of solvation -28.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds