Wall clock time and date at job start Tue Mar 31 2020 05:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99828 * 2 1 4 4 C 1.53002 * 109.47105 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.47164 * 60.62624 * 4 3 2 6 6 C 1.46898 * 111.00260 * 187.33967 * 5 4 3 7 7 C 1.52997 * 109.47382 * 166.20474 * 6 5 4 8 8 C 1.50703 * 115.54653 * 305.41645 * 7 6 5 9 9 H 1.08001 * 119.99488 * 144.34096 * 8 7 6 10 10 C 1.37870 * 120.00396 * 324.34091 * 8 7 6 11 11 N 1.31517 * 119.99886 * 3.24350 * 10 8 7 12 12 Si 1.86804 * 120.00323 * 183.24041 * 10 8 7 13 13 H 1.48498 * 109.46810 * 94.99713 * 12 10 8 14 14 H 1.48500 * 109.46977 * 214.99693 * 12 10 8 15 15 H 1.48497 * 109.46881 * 334.99873 * 12 10 8 16 16 C 1.52998 * 117.50199 * 159.74903 * 7 6 5 17 17 C 1.52995 * 117.50258 * 91.08799 * 7 6 5 18 18 C 1.46898 * 111.00188 * 63.37943 * 5 4 3 19 19 H 1.09004 * 110.43845 * 154.38068 * 18 5 4 20 20 C 1.54893 * 110.48459 * 31.84342 * 18 5 4 21 21 C 1.54887 * 102.74956 * 203.24780 * 20 18 5 22 22 C 1.54263 * 104.19815 * 37.93943 * 21 20 18 23 23 H 1.08997 * 110.03345 * 95.67749 * 22 21 20 24 24 C 1.53001 * 110.03202 * 217.05801 * 22 21 20 25 25 C 1.53877 * 106.59670 * 336.39242 * 22 21 20 26 26 H 1.08995 * 109.47442 * 299.99837 * 1 2 3 27 27 H 1.09003 * 109.47057 * 60.00333 * 1 2 3 28 28 H 1.09006 * 109.46977 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47117 * 60.00096 * 3 2 1 30 30 H 1.09001 * 109.47232 * 299.99575 * 3 2 1 31 31 H 1.08998 * 109.47062 * 300.62762 * 4 3 2 32 32 H 1.09000 * 109.47059 * 180.62547 * 4 3 2 33 33 H 1.09002 * 109.46901 * 286.20365 * 6 5 4 34 34 H 1.09002 * 109.47176 * 46.20346 * 6 5 4 35 35 H 0.96999 * 120.00221 * 185.00775 * 11 10 8 36 36 H 1.09011 * 117.49558 * 359.97438 * 16 7 6 37 37 H 1.08998 * 117.50428 * 145.01526 * 16 7 6 38 38 H 1.08998 * 117.50381 * 214.98078 * 17 7 6 39 39 H 1.09007 * 117.49593 * 359.97438 * 17 7 6 40 40 H 1.09004 * 110.75290 * 321.55872 * 20 18 5 41 41 H 1.08998 * 110.75767 * 84.92601 * 20 18 5 42 42 H 1.09002 * 110.48704 * 156.62337 * 21 20 18 43 43 H 1.09003 * 110.48113 * 279.13004 * 21 20 18 44 44 H 1.09009 * 109.46945 * 63.48100 * 24 22 21 45 45 H 1.08998 * 109.46833 * 183.47701 * 24 22 21 46 46 H 1.08997 * 109.47284 * 303.47790 * 24 22 21 47 47 H 1.09000 * 110.03381 * 240.71168 * 25 22 21 48 48 H 1.09002 * 110.03133 * 119.28571 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9704 0.4686 -1.2060 6 6 5.4100 0.1803 -1.1569 7 6 5.7618 -0.8459 -2.2357 8 6 4.9672 -2.1259 -2.1989 9 1 4.6959 -2.6197 -3.1203 10 6 4.5867 -2.6666 -0.9890 11 7 4.8617 -2.0328 0.1300 12 14 3.6807 -4.2995 -0.9392 13 1 4.6545 -5.3994 -0.7221 14 1 2.6948 -4.2848 0.1712 15 1 2.9727 -4.5121 -2.2271 16 6 7.2243 -0.9347 -2.6763 17 6 6.1803 -0.3135 -3.6076 18 6 3.6255 1.2225 -2.4187 19 1 4.3011 0.9623 -3.2336 20 6 3.6718 2.7457 -2.1416 21 6 2.7434 3.3212 -3.2397 22 6 1.6006 2.2907 -3.3473 23 1 0.7552 2.6053 -2.7354 24 6 1.1644 2.1422 -4.8063 25 6 2.1615 0.9563 -2.8253 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6885 1.8463 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8559 0.6343 0.8852 32 1 3.9787 2.1804 0.0119 33 1 5.9706 1.0985 -1.3323 34 1 5.6670 -0.2206 -0.1764 35 1 4.6595 -2.4462 0.9839 36 1 7.9358 -0.2616 -2.1978 37 1 7.6117 -1.9188 -2.9399 38 1 5.8814 -0.8892 -4.4836 39 1 6.2047 0.7680 -3.7417 40 1 3.2810 2.9697 -1.1490 41 1 4.6863 3.1281 -2.2539 42 1 2.3534 4.2935 -2.9384 43 1 3.2773 3.4022 -4.1866 44 1 1.9920 1.7450 -5.3943 45 1 0.3168 1.4594 -4.8644 46 1 0.8739 3.1164 -5.1996 47 1 2.1235 0.2022 -3.6114 48 1 1.5883 0.6233 -1.9600 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602822783.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:20 Heat of formation + Delta-G solvation = 1.600015 kcal Electronic energy + Delta-G solvation = -25033.986060 eV Core-core repulsion = 21897.647238 eV Total energy + Delta-G solvation = -3136.338822 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.53684 -36.94592 -36.52701 -34.28553 -31.85232 -29.96178 -29.25099 -27.92466 -25.91204 -25.32869 -24.59844 -23.29332 -21.64336 -20.97697 -19.57594 -18.84297 -18.59074 -16.57168 -15.94340 -15.55357 -14.95647 -14.58638 -14.46948 -14.24761 -13.91574 -13.56352 -13.33934 -13.02657 -12.76824 -12.44701 -12.16054 -11.89053 -11.78455 -11.42694 -11.18066 -11.02549 -10.86940 -10.73252 -10.61742 -10.44147 -10.41259 -10.35178 -10.25731 -10.22975 -9.88023 -9.73414 -9.50158 -9.19346 -9.00322 -8.64485 -8.45055 -7.90690 -6.81524 -5.66963 -3.74416 3.45845 3.54502 3.56761 4.36093 4.62566 4.78204 5.05073 5.09198 5.18634 5.38954 5.53158 5.58397 5.63283 5.71521 5.74864 5.78607 5.82341 5.83511 5.88341 5.96645 6.01028 6.08164 6.10159 6.14976 6.23776 6.28564 6.30291 6.36378 6.40830 6.47351 6.58651 6.64139 6.72457 6.77056 6.82588 6.89752 7.02303 7.08065 7.10960 7.36517 7.45458 7.76200 7.80803 8.21939 8.45662 8.49703 8.75867 9.18830 9.86301 11.30345 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013766 B = 0.008386 C = 0.006704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.507554 B = 3338.001313 C = 4175.807583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.349 6.349 3 C 0.054 3.946 4 C 0.059 3.941 5 N -0.469 5.469 6 C 0.107 3.893 7 C 0.072 3.928 8 C -0.471 4.471 9 H 0.050 0.950 10 C 0.093 3.907 11 N -0.866 5.866 12 Si 0.889 3.111 13 H -0.289 1.289 14 H -0.287 1.287 15 H -0.278 1.278 16 C -0.213 4.213 17 C -0.220 4.220 18 C 0.082 3.918 19 H 0.089 0.911 20 C -0.171 4.171 21 C -0.114 4.114 22 C -0.100 4.100 23 H 0.059 0.941 24 C -0.141 4.141 25 C -0.125 4.125 26 H 0.029 0.971 27 H 0.033 0.967 28 H 0.079 0.921 29 H 0.031 0.969 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.034 0.966 33 H -0.023 1.023 34 H 0.119 0.881 35 H 0.253 0.747 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.045 0.955 47 H 0.060 0.940 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.617 10.071 -1.801 12.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.267 6.267 3 C -0.023 4.023 4 C -0.069 4.069 5 N -0.189 5.189 6 C -0.020 4.020 7 C 0.071 3.929 8 C -0.508 4.508 9 H 0.068 0.932 10 C -0.110 4.110 11 N -0.503 5.503 12 Si 0.718 3.282 13 H -0.216 1.216 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.252 4.252 17 C -0.258 4.258 18 C -0.028 4.028 19 H 0.107 0.893 20 C -0.210 4.210 21 C -0.152 4.152 22 C -0.118 4.118 23 H 0.077 0.923 24 C -0.198 4.198 25 C -0.162 4.162 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.098 0.902 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.052 0.948 33 H -0.005 1.005 34 H 0.137 0.863 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.078 0.922 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.844 9.433 -1.589 11.762 hybrid contribution -0.223 0.224 -0.095 0.330 sum -7.067 9.657 -1.684 12.085 Atomic orbital electron populations 1.22677 0.83472 1.02094 0.98702 1.88252 1.17113 1.26748 1.94556 1.22877 0.95091 0.85378 0.98910 1.22093 0.92224 0.96219 0.96395 1.61640 1.17485 1.41614 0.98157 1.21838 0.84534 0.92298 1.03297 1.18981 0.90442 0.95224 0.88215 1.20224 1.33238 1.05264 0.92091 0.93206 1.24658 0.94336 0.96394 0.95647 1.69757 1.47984 1.35468 0.97065 0.86645 0.79679 0.84284 0.77561 1.21600 1.21336 1.20311 1.23005 0.95408 0.99945 1.06803 1.22929 1.08679 0.97109 0.97062 1.22662 0.96688 0.88252 0.95197 0.89312 1.23414 0.98940 0.99478 0.99186 1.22320 0.96553 0.97342 0.98968 1.21786 0.97287 0.96664 0.96108 0.92268 1.21860 1.01113 1.00574 0.96293 1.22616 0.96887 0.94836 1.01904 0.95248 0.94851 0.90237 0.95131 0.92241 0.89912 0.94834 1.00540 0.86348 0.93647 0.92155 0.90621 0.91058 0.92018 0.90626 0.92602 0.92850 0.92002 0.92526 0.93075 0.93561 0.92162 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.68 101.05 1.08 1.49 16 2 O -0.35 -6.75 9.35 -35.23 -0.33 -7.08 16 3 C 0.05 0.92 4.67 37.16 0.17 1.09 16 4 C 0.06 1.12 4.83 -3.82 -0.02 1.10 16 5 N -0.47 -9.98 3.81 -224.67 -0.86 -10.83 16 6 C 0.11 2.50 3.89 -3.83 -0.01 2.48 16 7 C 0.07 1.78 1.71 -155.66 -0.27 1.51 16 8 C -0.47 -12.88 8.75 -34.44 -0.30 -13.18 16 9 H 0.05 1.40 7.82 -52.49 -0.41 0.99 16 10 C 0.09 2.53 5.32 -17.82 -0.09 2.44 16 11 N -0.87 -23.51 10.19 55.43 0.57 -22.95 16 12 Si 0.89 21.95 29.54 -169.99 -5.02 16.92 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 C -0.21 -4.89 9.96 -26.70 -0.27 -5.16 16 17 C -0.22 -4.88 8.30 -26.70 -0.22 -5.10 16 18 C 0.08 1.53 2.68 -66.06 -0.18 1.36 16 19 H 0.09 1.84 4.90 -51.93 -0.25 1.58 16 20 C -0.17 -2.68 5.30 -24.74 -0.13 -2.81 16 21 C -0.11 -1.54 6.36 -25.07 -0.16 -1.70 16 22 C -0.10 -1.39 2.95 -89.50 -0.26 -1.65 16 23 H 0.06 0.78 7.84 -51.93 -0.41 0.37 16 24 C -0.14 -1.77 8.84 37.16 0.33 -1.44 16 25 C -0.12 -2.19 5.30 -25.61 -0.14 -2.32 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.03 0.44 7.80 -51.93 -0.40 0.04 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.94 3.60 -51.93 -0.19 0.76 16 31 H 0.08 1.74 7.94 -51.93 -0.41 1.33 16 32 H 0.03 0.58 5.85 -51.93 -0.30 0.28 16 33 H -0.02 -0.52 8.03 -51.93 -0.42 -0.94 16 34 H 0.12 3.05 5.65 -51.93 -0.29 2.75 16 35 H 0.25 6.75 8.32 -40.82 -0.34 6.41 16 36 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 37 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 38 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 39 H 0.06 1.27 7.45 -51.93 -0.39 0.89 16 40 H 0.08 1.15 4.35 -51.93 -0.23 0.92 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.83 7.86 -51.93 -0.41 0.42 16 44 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 1.14 7.67 -51.93 -0.40 0.74 16 48 H 0.09 1.69 3.27 -51.93 -0.17 1.52 16 LS Contribution 351.66 15.07 5.30 5.30 Total: -1.00 -27.83 351.66 -9.28 -37.10 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -8.47 Total: 3.44 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: -0.47 Total: -21.90 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: -0.29 Total: -33.78 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.33 Total: -7.08 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.83 -9.28 -37.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602822783.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.702 kcal (2) G-P(sol) polarization free energy of solvation -27.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds