Wall clock time and date at job start Tue Mar 31 2020 06:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46906 * 109.47122 * 2 1 4 4 C 1.46895 * 110.99756 * 73.25494 * 3 2 1 5 5 C 1.52996 * 109.47255 * 62.78491 * 4 3 2 6 6 C 1.50706 * 115.54955 * 278.15907 * 5 4 3 7 7 H 1.07994 * 119.99905 * 125.10260 * 6 5 4 8 8 C 1.37878 * 119.99564 * 305.10703 * 6 5 4 9 9 N 1.31512 * 119.99309 * 180.25681 * 8 6 5 10 10 Si 1.86795 * 120.00571 * 0.25853 * 8 6 5 11 11 H 1.48498 * 109.47258 * 91.81835 * 10 8 6 12 12 H 1.48504 * 109.47167 * 211.82170 * 10 8 6 13 13 H 1.48503 * 109.46988 * 331.82122 * 10 8 6 14 14 C 1.52999 * 117.50148 * 132.45377 * 5 4 3 15 15 C 1.52989 * 60.00123 * 252.50894 * 14 5 4 16 16 C 1.46903 * 110.99812 * 197.20803 * 3 2 1 17 17 H 1.08992 * 109.54631 * 296.52000 * 16 3 2 18 18 C 1.53184 * 109.61196 * 176.29894 * 16 3 2 19 19 C 1.53091 * 109.16135 * 183.11124 * 18 16 3 20 20 O 1.42896 * 109.41826 * 57.60631 * 19 18 16 21 21 C 1.42900 * 114.10023 * 298.84510 * 20 19 18 22 22 C 1.53001 * 109.48266 * 301.17049 * 21 20 19 23 23 C 1.53003 * 109.49201 * 181.14570 * 21 20 19 24 24 C 1.53092 * 109.41492 * 61.15349 * 21 20 19 25 25 H 1.09000 * 109.47773 * 55.98776 * 1 2 3 26 26 H 1.09001 * 109.47398 * 175.99228 * 1 2 3 27 27 H 1.08999 * 109.47211 * 295.98195 * 1 2 3 28 28 H 1.09004 * 109.47183 * 239.99988 * 2 1 3 29 29 H 1.09005 * 109.47527 * 119.99857 * 2 1 3 30 30 H 1.09007 * 109.46882 * 182.78540 * 4 3 2 31 31 H 1.09001 * 109.47207 * 302.77626 * 4 3 2 32 32 H 0.97006 * 119.99938 * 179.97438 * 9 8 6 33 33 H 1.09007 * 117.49779 * 0.02562 * 14 5 4 34 34 H 1.08997 * 117.50399 * 145.01595 * 14 5 4 35 35 H 1.09004 * 117.49925 * 252.51355 * 15 14 5 36 36 H 1.09002 * 117.52606 * 107.47705 * 15 14 5 37 37 H 1.09000 * 109.51991 * 303.01592 * 18 16 3 38 38 H 1.08997 * 109.51884 * 63.14378 * 18 16 3 39 39 H 1.08998 * 109.48038 * 177.59667 * 19 18 16 40 40 H 1.09011 * 109.47748 * 297.61530 * 19 18 16 41 41 H 1.08998 * 109.47749 * 179.97438 * 22 21 20 42 42 H 1.09004 * 109.46403 * 59.94107 * 22 21 20 43 43 H 1.08997 * 109.47131 * 299.94839 * 22 21 20 44 44 H 1.08999 * 109.46887 * 180.02562 * 23 21 20 45 45 H 1.09002 * 109.47106 * 300.02733 * 23 21 20 46 46 H 1.08996 * 109.47258 * 60.03051 * 23 21 20 47 47 H 1.09003 * 109.52223 * 62.30138 * 24 21 20 48 48 H 1.09007 * 109.52211 * 182.42001 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8225 2.0130 1.3133 5 6 2.6427 1.2636 2.3652 6 6 2.0105 0.0085 2.9093 7 1 2.5470 -0.9278 2.8684 8 6 0.7470 0.0557 3.4593 9 7 0.1974 -1.0386 3.9388 10 14 -0.1840 1.6738 3.5235 11 1 -1.0214 1.8118 2.3050 12 1 -1.0536 1.6972 4.7271 13 1 0.7830 2.7990 3.5895 14 6 3.4947 2.0986 3.3232 15 6 4.1655 1.2809 2.2177 16 6 3.4302 1.4446 -0.4057 17 1 4.0420 0.9128 0.3228 18 6 3.8814 2.9065 -0.4841 19 6 5.3280 2.9599 -0.9822 20 8 5.4170 2.3130 -2.2533 21 6 5.0526 0.9314 -2.2317 22 6 5.9584 0.1800 -1.2540 23 6 5.2126 0.3393 -3.6334 24 6 3.5949 0.7965 -1.7838 25 1 -0.3634 0.5748 -0.8518 26 1 -0.3634 -1.0251 -0.0718 27 1 -0.3633 0.4502 0.9238 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.1481 3.0525 1.2714 31 1 0.7664 1.9736 1.5800 32 1 -0.6913 -1.0055 4.3261 33 1 3.4705 3.1819 3.2044 34 1 3.5980 1.7403 4.3474 35 1 4.7100 0.3845 2.5146 36 1 4.5830 1.8257 1.3710 37 1 3.2376 3.4497 -1.1758 38 1 3.8186 3.3604 0.5049 39 1 5.6404 3.9995 -1.0806 40 1 5.9770 2.4513 -0.2691 41 1 5.6801 -0.8737 -1.2372 42 1 5.8445 0.6023 -0.2555 43 1 6.9962 0.2763 -1.5730 44 1 4.9342 -0.7144 -3.6166 45 1 4.5673 0.8746 -4.3298 46 1 6.2504 0.4357 -3.9522 47 1 2.9454 1.2972 -2.5018 48 1 3.3280 -0.2588 -1.7253 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602832642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:01 Heat of formation + Delta-G solvation = 1.181252 kcal Electronic energy + Delta-G solvation = -25234.841371 eV Core-core repulsion = 22098.484390 eV Total energy + Delta-G solvation = -3136.356981 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.39375 -38.22135 -34.99558 -33.47932 -32.75729 -31.90785 -29.16047 -28.17817 -27.30962 -26.29217 -24.68749 -23.70546 -21.86573 -21.15196 -20.25516 -18.95371 -18.73482 -16.53578 -16.14251 -16.05836 -15.27262 -15.21091 -14.40451 -14.22782 -13.90975 -13.65981 -13.41601 -13.10520 -12.97633 -12.74499 -12.49221 -12.20397 -12.06295 -11.86651 -11.67685 -11.41792 -11.29435 -11.11179 -11.10265 -10.93841 -10.82040 -10.48774 -10.33814 -10.20313 -10.08148 -9.85913 -9.66929 -9.48112 -9.28593 -8.93652 -8.79481 -8.50598 -7.33883 -6.18473 -4.12600 3.21224 3.34037 3.38146 3.85267 4.34197 4.48303 4.82429 4.86262 4.94157 5.07036 5.20556 5.22850 5.39082 5.45416 5.55998 5.62122 5.65060 5.71762 5.75563 5.80478 5.84252 5.91700 5.99842 6.05601 6.11545 6.16030 6.16888 6.20985 6.26940 6.30165 6.34814 6.36807 6.41567 6.47472 6.64900 6.72945 6.73516 6.81131 6.99747 7.05130 7.11582 7.30450 7.40551 7.66231 7.88086 7.92033 8.41967 8.81016 9.44213 10.92831 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023732 B = 0.006490 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.568075 B = 4313.190244 C = 4642.727452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.027 3.973 3 N -0.523 5.523 4 C 0.079 3.921 5 C -0.024 4.024 6 C -0.478 4.478 7 H 0.075 0.925 8 C 0.083 3.917 9 N -0.892 5.892 10 Si 0.874 3.126 11 H -0.273 1.273 12 H -0.298 1.298 13 H -0.258 1.258 14 C -0.201 4.201 15 C -0.202 4.202 16 C 0.059 3.941 17 H 0.082 0.918 18 C -0.151 4.151 19 C 0.061 3.939 20 O -0.377 6.377 21 C 0.113 3.887 22 C -0.181 4.181 23 C -0.135 4.135 24 C -0.135 4.135 25 H 0.041 0.959 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.265 0.735 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.051 0.949 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.072 0.928 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.014 4.729 -10.835 14.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.100 4.100 3 N -0.246 5.246 4 C -0.049 4.049 5 C -0.026 4.026 6 C -0.515 4.515 7 H 0.093 0.907 8 C -0.120 4.120 9 N -0.528 5.528 10 Si 0.703 3.297 11 H -0.200 1.200 12 H -0.226 1.226 13 H -0.183 1.183 14 C -0.239 4.239 15 C -0.239 4.239 16 C -0.049 4.049 17 H 0.100 0.900 18 C -0.189 4.189 19 C -0.016 4.016 20 O -0.296 6.296 21 C 0.074 3.926 22 C -0.238 4.238 23 C -0.192 4.192 24 C -0.173 4.173 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.091 0.909 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.604 4.982 -11.270 14.480 hybrid contribution -0.320 0.300 1.120 1.203 sum 7.284 5.282 -10.151 13.564 Atomic orbital electron populations 1.21685 0.96207 1.00383 1.01342 1.22473 0.95474 0.89305 1.02725 1.62475 1.16362 1.18842 1.26886 1.22018 0.99732 0.95881 0.87245 1.20095 0.89052 0.97369 0.96062 1.20193 1.00646 0.92376 1.38293 0.90661 1.24853 0.97118 0.95810 0.94247 1.69874 1.16037 1.27423 1.39501 0.87094 0.80238 0.85639 0.76693 1.19984 1.22567 1.18251 1.23068 1.09226 0.95714 0.95929 1.23207 0.97888 1.02234 1.00571 1.22166 0.91461 0.95260 0.96013 0.90048 1.22301 0.96658 0.97855 1.02095 1.22566 0.95909 0.97369 0.85741 1.87900 1.88326 1.22770 1.30652 1.21475 0.93525 0.81852 0.95786 1.22476 0.99814 1.01164 1.00376 1.21732 1.02338 1.00382 0.94785 1.22326 0.95606 1.01652 0.97733 0.94024 0.93293 0.92356 0.92903 0.88675 0.92814 0.91344 0.92490 0.91557 0.89867 0.90247 0.89231 0.90750 0.90766 0.89272 0.93045 0.91475 0.91517 0.92246 0.91230 0.91965 0.92150 0.90927 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.91 37.15 0.37 -2.40 16 2 C 0.03 0.53 5.23 -3.83 -0.02 0.51 16 3 N -0.52 -9.90 4.53 -226.43 -1.03 -10.93 16 4 C 0.08 1.64 4.10 -3.83 -0.02 1.63 16 5 C -0.02 -0.52 0.52 -155.66 -0.08 -0.60 16 6 C -0.48 -12.42 6.67 -34.44 -0.23 -12.65 16 7 H 0.08 2.16 8.01 -52.49 -0.42 1.74 16 8 C 0.08 2.24 5.21 -17.82 -0.09 2.14 16 9 N -0.89 -25.76 13.96 55.43 0.77 -24.98 16 10 Si 0.87 21.15 23.33 -169.99 -3.97 17.18 16 11 H -0.27 -6.45 6.13 56.52 0.35 -6.10 16 12 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 13 H -0.26 -6.02 6.39 56.52 0.36 -5.66 16 14 C -0.20 -4.13 9.50 -26.74 -0.25 -4.38 16 15 C -0.20 -3.89 7.58 -26.74 -0.20 -4.09 16 16 C 0.06 0.96 1.04 -67.53 -0.07 0.89 16 17 H 0.08 1.41 2.68 -51.93 -0.14 1.27 16 18 C -0.15 -2.24 4.16 -26.59 -0.11 -2.35 16 19 C 0.06 0.80 6.45 37.20 0.24 1.04 16 20 O -0.38 -5.32 10.24 -35.23 -0.36 -5.68 16 21 C 0.11 1.47 1.11 -90.57 -0.10 1.37 16 22 C -0.18 -2.23 7.93 37.16 0.29 -1.94 16 23 C -0.14 -1.47 8.85 37.16 0.33 -1.14 16 24 C -0.14 -1.97 3.83 -26.59 -0.10 -2.07 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 1.31 4.51 -51.93 -0.23 1.08 16 28 H 0.05 0.94 5.51 -51.93 -0.29 0.65 16 29 H 0.10 2.18 4.63 -51.93 -0.24 1.94 16 30 H 0.05 1.06 6.11 -51.92 -0.32 0.74 16 31 H 0.07 1.56 2.39 -51.93 -0.12 1.43 16 32 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.07 1.25 8.07 -51.92 -0.42 0.83 16 34 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 35 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 36 H 0.09 1.52 3.41 -51.93 -0.18 1.35 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.07 1.14 5.67 -51.93 -0.29 0.84 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.65 5.91 -51.92 -0.31 0.35 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.89 4.96 -51.93 -0.26 0.63 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.07 1.07 6.20 -51.93 -0.32 0.75 16 LS Contribution 327.84 15.07 4.94 4.94 Total: -1.00 -27.52 327.84 -7.53 -35.05 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -7.84 Total: 8.45 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -0.05 Total: -24.04 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: -0.25 Total: -35.91 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.36 Total: -5.68 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -3.97 Total: 17.18 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.52 -7.53 -35.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602832642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.233 kcal (2) G-P(sol) polarization free energy of solvation -27.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds