Wall clock time and date at job start Tue Mar 31 2020 05:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47488 * 2 1 4 4 N 1.46500 * 109.47031 * 120.00230 * 2 1 3 5 5 C 1.46504 * 120.00268 * 118.41560 * 4 2 1 6 6 C 1.50698 * 109.47061 * 270.00079 * 5 4 2 7 7 H 1.08000 * 119.99926 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99663 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00189 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99734 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46882 * 90.00233 * 10 8 6 12 12 H 1.48497 * 109.47065 * 209.99616 * 10 8 6 13 13 H 1.48499 * 109.47225 * 330.00439 * 10 8 6 14 14 C 1.34779 * 120.00029 * 298.41479 * 4 2 1 15 15 O 1.21277 * 119.99794 * 5.34821 * 14 4 2 16 16 C 1.50700 * 120.00057 * 185.35183 * 14 4 2 17 17 C 1.53000 * 109.47054 * 186.32735 * 16 14 4 18 18 H 1.09001 * 109.47216 * 304.99780 * 17 16 14 19 19 C 1.52996 * 109.47261 * 64.99583 * 17 16 14 20 20 C 1.53000 * 109.47261 * 180.02562 * 19 17 16 21 21 C 1.53001 * 109.47314 * 300.00553 * 20 19 17 22 22 C 1.52996 * 109.47408 * 59.99537 * 21 20 19 23 23 H 1.09000 * 109.47316 * 180.02562 * 22 21 20 24 24 C 1.53001 * 109.47247 * 60.00130 * 22 21 20 25 25 C 1.53000 * 109.47261 * 300.00495 * 22 21 20 26 26 H 1.09002 * 109.47095 * 306.59173 * 1 2 3 27 27 H 1.08997 * 109.47139 * 66.59806 * 1 2 3 28 28 H 1.09003 * 109.47055 * 186.59669 * 1 2 3 29 29 H 1.09001 * 109.47357 * 239.99569 * 2 1 3 30 30 H 1.08996 * 109.47404 * 173.86682 * 3 2 1 31 31 H 1.09004 * 109.47155 * 293.87391 * 3 2 1 32 32 H 1.09007 * 109.47037 * 53.86689 * 3 2 1 33 33 H 1.09002 * 109.46806 * 30.00032 * 5 4 2 34 34 H 1.08997 * 109.46984 * 149.99436 * 5 4 2 35 35 H 0.97004 * 119.99901 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.47271 * 66.32872 * 16 14 4 37 37 H 1.08998 * 109.47049 * 306.32436 * 16 14 4 38 38 H 1.09000 * 109.47316 * 299.99929 * 19 17 16 39 39 H 1.08998 * 109.46924 * 60.00495 * 19 17 16 40 40 H 1.09001 * 109.47216 * 60.00196 * 20 19 17 41 41 H 1.08992 * 109.47548 * 180.02562 * 20 19 17 42 42 H 1.08997 * 109.47298 * 180.02562 * 21 20 19 43 43 H 1.09010 * 109.46752 * 299.99786 * 21 20 19 44 44 H 1.09000 * 109.47318 * 300.00434 * 24 22 21 45 45 H 1.09006 * 109.46944 * 60.00055 * 24 22 21 46 46 H 1.09000 * 109.47210 * 179.97438 * 24 22 21 47 47 H 1.09001 * 109.47216 * 299.99803 * 25 22 21 48 48 H 1.09000 * 109.47579 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.8317 -1.9018 1.0620 6 6 1.9324 -3.1108 1.0387 7 1 0.8621 -2.9892 1.1164 8 6 2.4762 -4.3721 0.9181 9 7 3.7795 -4.5200 0.8229 10 14 1.3615 -5.8708 0.8898 11 1 0.9751 -6.1739 -0.5117 12 1 2.0815 -7.0341 1.4673 13 1 0.1419 -5.5958 1.6911 14 6 1.7193 -0.2119 2.4200 15 8 0.9671 0.7325 2.5345 16 6 2.3196 -0.8501 3.6462 17 6 1.7020 -0.2270 4.8997 18 1 1.8279 0.8553 4.8672 19 6 0.2111 -0.5655 4.9559 20 6 -0.4066 0.0582 6.2091 21 6 0.2901 -0.4986 7.4523 22 6 1.7811 -0.1601 7.3960 23 1 2.2775 -0.5571 8.2815 24 6 1.9578 1.3590 7.3497 25 6 2.3988 -0.7837 6.1429 26 1 -0.3633 0.6126 0.8251 27 1 -0.3633 0.4082 -0.9431 28 1 -0.3633 -1.0209 0.1181 29 1 1.8934 -0.5139 -0.8899 30 1 3.1245 1.4443 0.1098 31 1 1.7691 1.9236 -0.9398 32 1 1.5899 1.9870 0.8300 33 1 3.4023 -1.8553 0.1344 34 1 3.5168 -1.9746 1.9067 35 1 4.1620 -5.4074 0.7384 36 1 3.3970 -0.6847 3.6513 37 1 2.1163 -1.9209 3.6349 38 1 -0.2854 -0.1684 4.0705 39 1 0.0852 -1.6477 4.9885 40 1 -0.2808 1.1404 6.1761 41 1 -1.4687 -0.1833 6.2494 42 1 -0.1503 -0.0546 8.3450 43 1 0.1642 -1.5809 7.4852 44 1 1.4615 1.7557 6.4641 45 1 1.5177 1.8034 8.2425 46 1 3.0200 1.6002 7.3101 47 1 2.2729 -1.8659 6.1758 48 1 3.4611 -0.5430 6.1030 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608814632.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:54 Heat of formation + Delta-G solvation = -79.660365 kcal Electronic energy + Delta-G solvation = -23967.350352 eV Core-core repulsion = 20827.487815 eV Total energy + Delta-G solvation = -3139.862537 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.75578 -38.48038 -35.34202 -33.42257 -32.52612 -31.46563 -31.05232 -27.18351 -26.68529 -26.56221 -26.39258 -22.89888 -22.06866 -21.96600 -20.44252 -18.42649 -17.78684 -16.59868 -15.89563 -15.62245 -14.95886 -14.80822 -14.44270 -14.20475 -14.02558 -13.69027 -13.25350 -13.07834 -12.66218 -12.46205 -12.38650 -12.24624 -11.89699 -11.62326 -11.59279 -11.46167 -11.34993 -11.16458 -11.09783 -10.92463 -10.87692 -10.79281 -10.64916 -10.48698 -10.35988 -10.05809 -9.90256 -9.74688 -9.65361 -9.64175 -8.65067 -8.49690 -7.60889 -6.16735 -4.23769 3.22820 3.30149 3.33365 3.54900 4.01927 4.35028 4.89225 4.89887 4.94214 5.15981 5.32132 5.38029 5.49327 5.55911 5.57059 5.66417 5.71718 5.74794 5.83769 5.83933 5.91507 5.99353 6.01588 6.04836 6.11452 6.18443 6.20352 6.26011 6.30233 6.33788 6.39473 6.47154 6.49676 6.50330 6.58074 6.61847 6.77924 6.84127 6.88539 6.91304 6.94819 7.22547 7.66623 7.80210 8.09183 8.46871 8.83909 9.16507 9.44567 10.89735 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013436 B = 0.006006 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.528081 B = 4660.790616 C = 5829.605338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.148 3.852 3 C -0.163 4.163 4 N -0.595 5.595 5 C 0.237 3.763 6 C -0.533 4.533 7 H 0.060 0.940 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.894 3.106 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.521 3.479 15 O -0.569 6.569 16 C -0.135 4.135 17 C -0.067 4.067 18 H 0.076 0.924 19 C -0.116 4.116 20 C -0.117 4.117 21 C -0.114 4.114 22 C -0.089 4.089 23 H 0.063 0.937 24 C -0.151 4.151 25 C -0.111 4.111 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.032 0.968 34 H 0.038 0.962 35 H 0.264 0.736 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.047 0.953 46 H 0.050 0.950 47 H 0.063 0.937 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.925 8.369 8.205 12.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.044 3.956 3 C -0.222 4.222 4 N -0.326 5.326 5 C 0.117 3.883 6 C -0.572 4.572 7 H 0.079 0.921 8 C -0.138 4.138 9 N -0.531 5.531 10 Si 0.721 3.279 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.198 1.198 14 C 0.310 3.690 15 O -0.451 6.451 16 C -0.175 4.175 17 C -0.086 4.086 18 H 0.094 0.906 19 C -0.153 4.153 20 C -0.154 4.154 21 C -0.151 4.151 22 C -0.107 4.107 23 H 0.081 0.919 24 C -0.208 4.208 25 C -0.149 4.149 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.081 0.919 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.143 8.693 8.216 12.367 hybrid contribution -0.362 -1.233 -0.211 1.302 sum -3.505 7.460 8.005 11.490 Atomic orbital electron populations 1.22155 0.95774 1.02484 1.01530 1.20788 0.94186 0.92161 0.88449 1.22177 1.00756 0.97134 1.02086 1.48355 1.52049 1.27861 1.04347 1.19429 0.90332 0.80235 0.98271 1.21512 0.93814 0.90769 1.51114 0.92137 1.24935 0.95032 0.98985 0.94860 1.69923 1.10159 1.23476 1.49541 0.86555 0.80716 0.82202 0.78382 1.20555 1.21076 1.19780 1.20433 0.80794 0.82914 0.84823 1.90494 1.37621 1.30144 1.86853 1.21727 1.00615 1.02793 0.92382 1.20890 0.94875 1.00454 0.92367 0.90615 1.21630 0.95451 1.00121 0.98141 1.21534 0.98651 1.00465 0.94799 1.21570 0.95130 1.00680 0.97750 1.21058 0.95907 0.95889 0.97896 0.91855 1.21947 1.01315 0.95716 1.01823 1.21636 0.99053 1.00255 0.93929 0.90898 0.93391 0.92518 0.90224 0.93259 0.92857 0.90904 0.94983 0.94375 0.92586 0.89899 0.88083 0.90353 0.92693 0.91963 0.92795 0.92753 0.92221 0.91609 0.93393 0.93074 0.91870 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.03 37.16 0.34 -2.57 16 2 C 0.15 2.78 3.28 -67.93 -0.22 2.56 16 3 C -0.16 -2.70 9.00 37.15 0.33 -2.37 16 4 N -0.60 -12.41 2.41 -167.47 -0.40 -12.81 16 5 C 0.24 5.61 4.86 -5.19 -0.03 5.58 16 6 C -0.53 -13.81 9.25 -34.44 -0.32 -14.12 16 7 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -24.54 13.29 55.43 0.74 -23.80 16 10 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 13 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 14 C 0.52 10.47 6.68 -10.98 -0.07 10.39 16 15 O -0.57 -11.79 10.61 5.56 0.06 -11.73 16 16 C -0.14 -2.43 3.61 -27.88 -0.10 -2.53 16 17 C -0.07 -1.04 1.56 -90.62 -0.14 -1.18 16 18 H 0.08 1.22 6.15 -51.93 -0.32 0.90 16 19 C -0.12 -1.83 4.95 -26.73 -0.13 -1.96 16 20 C -0.12 -1.54 5.65 -26.73 -0.15 -1.69 16 21 C -0.11 -1.33 5.45 -26.73 -0.15 -1.48 16 22 C -0.09 -1.04 3.19 -90.62 -0.29 -1.33 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 C -0.15 -1.68 8.50 37.16 0.32 -1.36 16 25 C -0.11 -1.49 4.73 -26.73 -0.13 -1.61 16 26 H 0.07 1.39 6.32 -51.93 -0.33 1.06 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.08 1.50 7.78 -51.93 -0.40 1.10 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.30 6.42 -51.93 -0.33 0.97 16 33 H 0.03 0.80 7.91 -51.93 -0.41 0.39 16 34 H 0.04 0.92 6.56 -51.93 -0.34 0.58 16 35 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.08 1.42 7.89 -51.93 -0.41 1.01 16 37 H 0.10 2.00 7.63 -51.93 -0.40 1.60 16 38 H 0.08 1.42 6.18 -51.93 -0.32 1.10 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.81 6.43 -51.93 -0.33 0.48 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 44 H 0.07 0.81 4.81 -51.93 -0.25 0.56 16 45 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 358.40 15.07 5.40 5.40 Total: -1.00 -26.87 358.40 -8.95 -35.83 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -8.89 Total: 3.57 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -0.84 Total: -12.06 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.33 Total: -36.61 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.06 Total: -11.73 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -26.87 -8.95 -35.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814632.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.832 kcal (2) G-P(sol) polarization free energy of solvation -26.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds