Wall clock time and date at job start Tue Mar 31 2020 05:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47234 * 2 1 4 4 N 1.46500 * 109.47056 * 120.00572 * 2 1 3 5 5 C 1.46504 * 119.99559 * 295.26881 * 4 2 1 6 6 C 1.50699 * 109.47238 * 89.99859 * 5 4 2 7 7 H 1.07992 * 119.99979 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99863 * 179.72289 * 6 5 4 9 9 N 1.31513 * 120.00050 * 0.27716 * 8 6 5 10 10 Si 1.86796 * 119.99827 * 180.27795 * 8 6 5 11 11 H 1.48496 * 109.47053 * 0.02562 * 10 8 6 12 12 H 1.48509 * 109.47086 * 120.00026 * 10 8 6 13 13 H 1.48495 * 109.46918 * 239.99847 * 10 8 6 14 14 C 1.34772 * 120.00192 * 115.26877 * 4 2 1 15 15 O 1.21284 * 119.99668 * 185.07579 * 14 4 2 16 16 C 1.50695 * 120.00043 * 5.07779 * 14 4 2 17 17 C 1.53005 * 109.46960 * 186.15397 * 16 14 4 18 18 H 1.09005 * 109.47220 * 304.99949 * 17 16 14 19 19 C 1.52995 * 109.47323 * 65.00072 * 17 16 14 20 20 C 1.52995 * 109.47312 * 179.97438 * 19 17 16 21 21 C 1.52997 * 109.47151 * 299.99978 * 20 19 17 22 22 C 1.53004 * 109.47032 * 60.00392 * 21 20 19 23 23 H 1.08992 * 109.47628 * 59.99785 * 22 21 20 24 24 C 1.52997 * 109.47032 * 180.02562 * 22 21 20 25 25 C 1.53001 * 109.46960 * 185.00520 * 17 16 14 26 26 H 1.09002 * 109.47229 * 305.12759 * 1 2 3 27 27 H 1.09002 * 109.46995 * 65.13141 * 1 2 3 28 28 H 1.09001 * 109.47392 * 185.12855 * 1 2 3 29 29 H 1.09001 * 109.47092 * 239.99853 * 2 1 3 30 30 H 1.08997 * 109.47526 * 174.66538 * 3 2 1 31 31 H 1.08998 * 109.47627 * 294.67352 * 3 2 1 32 32 H 1.09004 * 109.46865 * 54.67284 * 3 2 1 33 33 H 1.09008 * 109.47232 * 329.99840 * 5 4 2 34 34 H 1.09001 * 109.47095 * 210.00073 * 5 4 2 35 35 H 0.96994 * 120.00257 * 180.02562 * 9 8 6 36 36 H 1.08992 * 109.47262 * 306.15119 * 16 14 4 37 37 H 1.08999 * 109.47043 * 66.15989 * 16 14 4 38 38 H 1.09005 * 109.47145 * 300.00029 * 19 17 16 39 39 H 1.09005 * 109.47073 * 59.99787 * 19 17 16 40 40 H 1.08998 * 109.47173 * 179.97438 * 20 19 17 41 41 H 1.09005 * 109.47117 * 59.99947 * 20 19 17 42 42 H 1.08991 * 109.47588 * 300.00023 * 21 20 19 43 43 H 1.09004 * 109.47298 * 179.97438 * 21 20 19 44 44 H 1.08998 * 109.47100 * 179.97438 * 24 22 21 45 45 H 1.08995 * 109.47458 * 299.99144 * 24 22 21 46 46 H 1.09005 * 109.47582 * 59.99773 * 24 22 21 47 47 H 1.09005 * 109.46687 * 299.99755 * 25 17 16 48 48 H 1.08998 * 109.47574 * 59.99747 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7518 -0.1327 2.5242 6 6 0.4490 -0.6807 3.0472 7 1 -0.1230 -1.3755 2.4502 8 6 -0.0095 -0.2999 4.2905 9 7 0.6873 0.5458 5.0177 10 14 -1.6205 -0.9852 4.9420 11 1 -2.2065 -1.9103 3.9391 12 1 -1.3696 -1.7216 6.2070 13 1 -2.5656 0.1312 5.1983 14 6 2.7126 -1.8394 1.0747 15 8 3.0373 -2.4593 2.0653 16 6 3.0857 -2.3535 -0.2919 17 6 3.7276 -3.7360 -0.1589 18 1 4.5709 -3.6804 0.5297 19 6 2.6948 -4.7284 0.3788 20 6 3.3365 -6.1109 0.5112 21 6 3.8274 -6.5787 -0.8603 22 6 4.8604 -5.5864 -1.3980 23 1 5.7037 -5.5310 -0.7098 24 6 5.3508 -6.0538 -2.7698 25 6 4.2191 -4.2041 -1.5301 26 1 -0.3634 0.5913 0.8405 27 1 -0.3633 0.4322 -0.9324 28 1 -0.3634 -1.0235 0.0919 29 1 1.8933 -0.5139 -0.8900 30 1 3.1258 1.4440 0.0955 31 1 1.7567 1.9281 -0.9338 32 1 1.6008 1.9831 0.8385 33 1 1.6878 0.9533 2.4559 34 1 2.5598 -0.4071 3.2024 35 1 0.3650 0.8135 5.8925 36 1 2.1906 -2.4265 -0.9094 37 1 3.7934 -1.6676 -0.7573 38 1 2.3447 -4.3949 1.3557 39 1 1.8516 -4.7840 -0.3097 40 1 2.6008 -6.8178 0.8947 41 1 4.1799 -6.0556 1.1995 42 1 2.9842 -6.6340 -1.5487 43 1 4.2850 -7.5635 -0.7660 44 1 6.0864 -5.3467 -3.1530 45 1 5.8080 -7.0388 -2.6760 46 1 4.5073 -6.1088 -3.4580 47 1 3.3759 -4.2597 -2.2187 48 1 4.9549 -3.4971 -1.9132 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608814633.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:57 Heat of formation + Delta-G solvation = -79.699728 kcal Electronic energy + Delta-G solvation = -23547.474950 eV Core-core repulsion = 20407.610706 eV Total energy + Delta-G solvation = -3139.864244 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.65824 -38.27860 -35.89217 -33.28082 -32.68623 -31.66849 -30.75356 -28.26112 -26.74525 -26.42004 -26.02732 -22.88660 -21.86589 -21.33240 -20.43972 -19.63368 -17.77425 -16.54241 -16.40532 -15.24613 -15.04270 -14.83163 -14.41825 -14.23425 -14.05265 -13.58570 -13.42374 -13.36459 -12.85123 -12.58932 -12.37185 -12.30147 -11.93310 -11.73976 -11.70111 -11.54098 -11.45198 -11.19690 -11.09127 -10.89526 -10.82475 -10.80897 -10.68667 -10.53549 -10.36191 -10.21433 -10.03336 -9.88076 -9.82282 -9.46707 -8.68165 -8.37617 -7.55519 -5.98791 -4.01372 3.31890 3.39736 3.43062 3.54797 4.00142 4.48774 4.69996 4.73429 4.81827 5.14307 5.16954 5.27070 5.33551 5.36564 5.39194 5.52465 5.57474 5.58034 5.63021 5.65157 5.71103 5.75559 5.80605 5.86653 5.91213 5.95970 6.02056 6.05426 6.08811 6.20810 6.28923 6.30554 6.36967 6.38667 6.41273 6.46937 6.63575 6.72482 6.79233 6.96394 7.19478 7.52363 7.66399 7.98823 8.31951 8.55287 8.98857 9.21956 9.62813 11.09412 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019124 B = 0.004622 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.793108 B = 6056.496296 C = 6899.764250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.134 3.866 3 C -0.161 4.161 4 N -0.596 5.596 5 C 0.246 3.754 6 C -0.514 4.514 7 H 0.058 0.942 8 C 0.059 3.941 9 N -0.897 5.897 10 Si 0.893 3.107 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.504 3.496 15 O -0.538 6.538 16 C -0.138 4.138 17 C -0.069 4.069 18 H 0.077 0.923 19 C -0.118 4.118 20 C -0.117 4.117 21 C -0.113 4.113 22 C -0.092 4.092 23 H 0.069 0.931 24 C -0.146 4.146 25 C -0.108 4.108 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.033 0.967 34 H 0.038 0.962 35 H 0.261 0.739 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.052 0.948 47 H 0.060 0.940 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.764 -7.083 -16.318 18.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.029 3.971 3 C -0.219 4.219 4 N -0.328 5.328 5 C 0.127 3.873 6 C -0.553 4.553 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.537 5.537 10 Si 0.721 3.279 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.211 1.211 14 C 0.291 3.709 15 O -0.416 6.416 16 C -0.178 4.178 17 C -0.088 4.088 18 H 0.095 0.905 19 C -0.156 4.156 20 C -0.155 4.155 21 C -0.150 4.150 22 C -0.111 4.111 23 H 0.087 0.913 24 C -0.203 4.203 25 C -0.145 4.145 26 H 0.096 0.904 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.078 0.922 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.925 -7.298 -15.606 18.218 hybrid contribution -1.018 -0.206 0.419 1.120 sum 4.907 -7.503 -15.187 17.636 Atomic orbital electron populations 1.22143 0.95008 1.02662 1.01596 1.20976 0.94877 0.93140 0.88116 1.22145 1.01099 0.96552 1.02070 1.48352 1.52710 1.23209 1.08532 1.19214 0.96913 0.93784 0.77410 1.21487 1.05604 1.26430 1.01775 0.92379 1.24925 0.97442 0.95261 0.96610 1.69938 1.38435 1.33531 1.11751 0.86517 0.83573 0.78784 0.79000 1.19863 1.21007 1.21105 1.20371 0.78787 0.81071 0.90720 1.90642 1.55091 1.56094 1.39773 1.21787 1.01701 0.97777 0.96538 1.20876 0.98801 0.92809 0.96281 0.90452 1.21658 0.97198 0.93933 1.02772 1.21499 1.00372 0.97046 0.96542 1.21602 0.98367 0.97866 0.97179 1.21112 0.98093 0.95172 0.96681 0.91302 1.21831 1.00828 1.00747 0.96943 1.21650 0.99930 0.95853 0.97109 0.90450 0.93390 0.92746 0.90729 0.92842 0.92456 0.91311 0.94895 0.94367 0.92947 0.89949 0.89849 0.89750 0.92999 0.92417 0.92050 0.92289 0.92598 0.92881 0.92995 0.92873 0.92168 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 8.43 37.16 0.31 -2.27 16 2 C 0.13 2.18 3.14 -67.93 -0.21 1.97 16 3 C -0.16 -2.39 8.94 37.15 0.33 -2.05 16 4 N -0.60 -12.46 2.39 -167.47 -0.40 -12.86 16 5 C 0.25 6.36 4.71 -5.19 -0.02 6.34 16 6 C -0.51 -14.37 8.01 -34.44 -0.28 -14.64 16 7 H 0.06 1.64 7.58 -52.49 -0.40 1.24 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 10 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.50 10.33 7.26 -10.99 -0.08 10.25 16 15 O -0.54 -13.28 13.85 5.55 0.08 -13.20 16 16 C -0.14 -2.04 3.59 -27.88 -0.10 -2.14 16 17 C -0.07 -0.97 1.84 -90.62 -0.17 -1.13 16 18 H 0.08 1.23 7.87 -51.93 -0.41 0.82 16 19 C -0.12 -1.78 4.95 -26.74 -0.13 -1.91 16 20 C -0.12 -1.50 5.92 -26.73 -0.16 -1.66 16 21 C -0.11 -1.20 5.20 -26.73 -0.14 -1.34 16 22 C -0.09 -0.94 2.72 -90.64 -0.25 -1.19 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 24 C -0.15 -1.24 9.19 37.16 0.34 -0.90 16 25 C -0.11 -1.18 4.48 -26.75 -0.12 -1.30 16 26 H 0.08 1.49 7.29 -51.93 -0.38 1.11 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.95 8.13 -51.93 -0.42 0.53 16 29 H 0.07 1.01 5.76 -51.93 -0.30 0.71 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.17 6.79 -51.93 -0.35 0.81 16 33 H 0.03 0.86 6.31 -51.92 -0.33 0.54 16 34 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.08 1.10 7.32 -51.93 -0.38 0.72 16 37 H 0.08 1.07 8.11 -51.93 -0.42 0.65 16 38 H 0.08 1.60 6.18 -51.93 -0.32 1.28 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 365.33 15.07 5.51 5.51 Total: -1.00 -31.26 365.33 -9.02 -40.28 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -9.15 Total: -0.36 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -0.77 Total: -10.40 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.34 Total: -38.82 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.08 Total: -13.20 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.26 -9.02 -40.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814633.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.421 kcal (2) G-P(sol) polarization free energy of solvation -31.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds