Wall clock time and date at job start Tue Mar 31 2020 05:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47311 * 2 1 4 4 N 1.46501 * 109.47077 * 120.00307 * 2 1 3 5 5 C 1.46493 * 120.00000 * 299.99570 * 4 2 1 6 6 C 1.50700 * 109.47166 * 270.00036 * 5 4 2 7 7 H 1.07999 * 120.00119 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99787 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99490 * 179.97438 * 8 6 5 10 10 Si 1.86794 * 120.00318 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47198 * 89.99517 * 10 8 6 12 12 H 1.48501 * 109.47126 * 209.99840 * 10 8 6 13 13 H 1.48500 * 109.47132 * 329.99774 * 10 8 6 14 14 C 1.34775 * 119.99764 * 119.99618 * 4 2 1 15 15 O 1.21286 * 119.99631 * 179.97438 * 14 4 2 16 16 C 1.50702 * 120.00459 * 359.97438 * 14 4 2 17 17 C 1.52996 * 109.47417 * 179.97438 * 16 14 4 18 18 H 1.09001 * 109.46993 * 54.99907 * 17 16 14 19 19 C 1.53005 * 109.47056 * 295.00407 * 17 16 14 20 20 C 1.53006 * 109.46542 * 179.97438 * 19 17 16 21 21 C 1.52997 * 109.47269 * 59.99862 * 20 19 17 22 22 C 1.52992 * 109.47482 * 299.99806 * 21 20 19 23 23 H 1.08998 * 109.46862 * 300.00565 * 22 21 20 24 24 C 1.52997 * 109.47482 * 179.97438 * 22 21 20 25 25 C 1.52997 * 109.47131 * 175.00038 * 17 16 14 26 26 H 1.09005 * 109.46635 * 299.99683 * 1 2 3 27 27 H 1.09000 * 109.47440 * 59.99477 * 1 2 3 28 28 H 1.09000 * 109.47859 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46635 * 240.00317 * 2 1 3 30 30 H 1.09003 * 109.47168 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47370 * 299.99838 * 3 2 1 32 32 H 1.09000 * 109.47459 * 60.00647 * 3 2 1 33 33 H 1.09004 * 109.47211 * 30.00321 * 5 4 2 34 34 H 1.09003 * 109.47415 * 149.99698 * 5 4 2 35 35 H 0.97001 * 119.99638 * 180.02562 * 9 8 6 36 36 H 1.09008 * 109.46649 * 59.99960 * 16 14 4 37 37 H 1.08997 * 109.47338 * 300.00418 * 16 14 4 38 38 H 1.09000 * 109.47360 * 59.99978 * 19 17 16 39 39 H 1.08998 * 109.47061 * 299.99160 * 19 17 16 40 40 H 1.09001 * 109.47369 * 299.99416 * 20 19 17 41 41 H 1.09004 * 109.46785 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.47153 * 179.97438 * 21 20 19 43 43 H 1.09001 * 109.46832 * 59.99780 * 21 20 19 44 44 H 1.09002 * 109.47153 * 59.99783 * 24 22 21 45 45 H 1.09001 * 109.46832 * 299.99974 * 24 22 21 46 46 H 1.09004 * 109.47261 * 179.97438 * 24 22 21 47 47 H 1.09001 * 109.46832 * 60.00325 * 25 17 16 48 48 H 1.08993 * 109.47194 * 299.99846 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.6645 -0.1902 2.5267 6 6 2.7033 0.8017 2.9829 7 1 3.5429 1.0361 2.3453 8 6 2.5813 1.4106 4.2140 9 7 3.4881 2.2758 4.6123 10 14 1.1288 1.0056 5.3165 11 1 1.4782 -0.1397 6.1948 12 1 0.7972 2.1874 6.1524 13 1 -0.0438 0.6472 4.4787 14 6 2.7931 -1.7865 1.0724 15 8 3.1977 -2.3580 2.0627 16 6 3.1567 -2.3017 -0.2964 17 6 4.0368 -3.5453 -0.1561 18 1 3.5278 -4.2825 0.4648 19 6 5.3654 -3.1587 0.4970 20 6 6.2452 -4.4026 0.6379 21 6 6.5114 -4.9983 -0.7460 22 6 5.1830 -5.3848 -1.3991 23 1 4.6737 -6.1217 -0.7780 24 6 5.4491 -5.9800 -2.7832 25 6 4.3030 -4.1405 -1.5402 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3635 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 0.6905 0.2973 2.4844 34 1 1.6238 -1.0227 3.2291 35 1 3.4025 2.7039 5.4785 36 1 3.7015 -1.5310 -0.8417 37 1 2.2482 -2.5587 -0.8410 38 1 5.1758 -2.7347 1.4831 39 1 5.8745 -2.4216 -0.1238 40 1 5.7360 -5.1395 1.2589 41 1 7.1919 -4.1271 1.1027 42 1 7.1386 -5.8842 -0.6457 43 1 7.0208 -4.2614 -1.3669 44 1 6.0762 -6.8660 -2.6832 45 1 5.9582 -5.2427 -3.4039 46 1 4.5027 -6.2558 -3.2482 47 1 4.8121 -3.4032 -2.1609 48 1 3.3566 -4.4159 -2.0053 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608814634.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:00 Heat of formation + Delta-G solvation = -75.248354 kcal Electronic energy + Delta-G solvation = -23561.768937 eV Core-core repulsion = 20422.097719 eV Total energy + Delta-G solvation = -3139.671218 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.73737 -38.33597 -36.00437 -33.29481 -32.63198 -31.67556 -30.94727 -28.67835 -26.79281 -26.57446 -26.13723 -22.59544 -21.82076 -21.39302 -20.41967 -19.63834 -17.83388 -16.84410 -16.64169 -15.28717 -15.10698 -14.93168 -14.44008 -14.14546 -14.00302 -13.63729 -13.53176 -13.34172 -12.91421 -12.63646 -12.49449 -12.36160 -11.97850 -11.81837 -11.77291 -11.72359 -11.55037 -11.34021 -11.15052 -10.91734 -10.85107 -10.82825 -10.69152 -10.50291 -10.32344 -10.23905 -10.07271 -9.95243 -9.82289 -9.42214 -8.76741 -8.54270 -7.63071 -6.04631 -4.01481 3.30720 3.36699 3.39089 3.44297 3.87314 4.42823 4.68152 4.72762 4.80804 5.08820 5.15681 5.20706 5.28307 5.33469 5.37008 5.50649 5.52518 5.58062 5.58665 5.63405 5.66936 5.73417 5.79393 5.84862 5.90863 5.94178 5.97980 6.03855 6.09548 6.12041 6.25989 6.30816 6.32670 6.35859 6.38165 6.47540 6.55090 6.71698 6.81532 6.85347 7.00887 7.03398 7.45504 7.67111 8.36672 8.53062 8.99356 9.09366 9.56689 11.08685 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020905 B = 0.004557 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.052707 B = 6143.065140 C = 6853.516284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.133 3.867 3 C -0.156 4.156 4 N -0.590 5.590 5 C 0.215 3.785 6 C -0.519 4.519 7 H 0.076 0.924 8 C 0.071 3.929 9 N -0.899 5.899 10 Si 0.873 3.127 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.507 3.493 15 O -0.538 6.538 16 C -0.137 4.137 17 C -0.068 4.068 18 H 0.075 0.925 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.113 4.113 22 C -0.092 4.092 23 H 0.068 0.932 24 C -0.146 4.146 25 C -0.108 4.108 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.029 0.971 34 H 0.033 0.967 35 H 0.263 0.737 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.060 0.940 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.678 -11.274 -15.448 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.029 3.971 3 C -0.214 4.214 4 N -0.322 5.322 5 C 0.094 3.906 6 C -0.557 4.557 7 H 0.094 0.906 8 C -0.131 4.131 9 N -0.538 5.538 10 Si 0.700 3.300 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.192 1.192 14 C 0.294 3.706 15 O -0.416 6.416 16 C -0.177 4.177 17 C -0.087 4.087 18 H 0.093 0.907 19 C -0.158 4.158 20 C -0.154 4.154 21 C -0.151 4.151 22 C -0.110 4.110 23 H 0.086 0.914 24 C -0.204 4.204 25 C -0.146 4.146 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.079 0.921 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.430 -11.439 -14.758 18.677 hybrid contribution -0.709 0.078 0.641 0.960 sum -1.139 -11.361 -14.117 18.156 Atomic orbital electron populations 1.22172 0.95834 1.01686 1.02374 1.21017 0.93822 0.94348 0.87930 1.22130 1.01712 0.95386 1.02200 1.48042 1.49733 1.26737 1.07710 1.19589 0.96197 0.95062 0.79718 1.21348 1.09183 1.22308 1.02904 0.90588 1.24850 0.96027 0.94824 0.97385 1.69898 1.34621 1.28535 1.20743 0.86905 0.83532 0.78175 0.81401 1.20029 1.21208 1.19173 1.20406 0.78642 0.80582 0.90947 1.90625 1.52827 1.58251 1.39913 1.21772 1.00775 0.98978 0.96148 1.20872 0.96035 0.95920 0.95858 0.90677 1.21715 0.94257 0.96926 1.02926 1.21501 0.99652 0.97974 0.96299 1.21608 0.96524 1.00109 0.96830 1.21124 0.96391 0.97247 0.96253 0.91359 1.21834 1.01229 1.00459 0.96839 1.21669 0.99131 0.96828 0.96939 0.91668 0.92092 0.92931 0.90393 0.92487 0.93326 0.90135 0.95333 0.94872 0.92706 0.89592 0.89890 0.89259 0.92940 0.92154 0.92355 0.92611 0.92247 0.92995 0.92832 0.92908 0.92076 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.17 37.16 0.34 -1.91 16 2 C 0.13 2.11 3.17 -67.93 -0.22 1.90 16 3 C -0.16 -2.62 8.47 37.15 0.31 -2.30 16 4 N -0.59 -11.96 2.39 -167.47 -0.40 -12.36 16 5 C 0.22 5.21 3.66 -5.20 -0.02 5.19 16 6 C -0.52 -14.61 8.38 -34.44 -0.29 -14.90 16 7 H 0.08 2.34 7.87 -52.49 -0.41 1.93 16 8 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 9 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 10 Si 0.87 21.67 27.47 -169.99 -4.67 17.00 16 11 H -0.27 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 14 C 0.51 10.12 7.39 -10.99 -0.08 10.04 16 15 O -0.54 -12.86 13.55 5.55 0.08 -12.79 16 16 C -0.14 -1.98 3.49 -27.88 -0.10 -2.07 16 17 C -0.07 -0.94 1.84 -90.62 -0.17 -1.11 16 18 H 0.07 1.15 7.95 -51.93 -0.41 0.74 16 19 C -0.12 -1.84 4.95 -26.73 -0.13 -1.97 16 20 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 21 C -0.11 -1.21 5.20 -26.74 -0.14 -1.35 16 22 C -0.09 -0.93 2.72 -90.60 -0.25 -1.18 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 C -0.15 -1.23 9.19 37.16 0.34 -0.89 16 25 C -0.11 -1.17 4.49 -26.70 -0.12 -1.29 16 26 H 0.06 1.02 6.66 -51.93 -0.35 0.67 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 1.02 5.77 -51.93 -0.30 0.72 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.59 6.92 -51.93 -0.36 1.24 16 33 H 0.03 0.67 5.48 -51.93 -0.28 0.38 16 34 H 0.03 0.87 6.85 -51.93 -0.36 0.52 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.09 1.16 7.79 -51.92 -0.40 0.75 16 37 H 0.08 1.01 7.79 -51.93 -0.40 0.60 16 38 H 0.09 1.72 5.95 -51.93 -0.31 1.41 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 361.10 15.07 5.44 5.44 Total: -1.00 -31.83 361.10 -8.64 -40.47 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -9.10 Total: 0.63 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -0.76 Total: -11.55 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.37 Total: -39.21 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.08 Total: -12.79 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.83 -8.64 -40.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814634.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.775 kcal (2) G-P(sol) polarization free energy of solvation -31.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds