Wall clock time and date at job start Tue Mar 31 2020 05:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46898 * 2 1 4 4 N 1.46493 * 109.47166 * 120.00189 * 2 1 3 5 5 C 1.46499 * 120.00169 * 118.03993 * 4 2 1 6 6 C 1.50696 * 109.47258 * 270.00012 * 5 4 2 7 7 H 1.07997 * 119.99956 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99847 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00360 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99721 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47221 * 90.00307 * 10 8 6 12 12 H 1.48502 * 109.46641 * 210.00173 * 10 8 6 13 13 H 1.48493 * 109.47283 * 329.99939 * 10 8 6 14 14 C 1.34779 * 119.99837 * 298.04466 * 4 2 1 15 15 O 1.21276 * 120.00031 * 5.18463 * 14 4 2 16 16 C 1.50706 * 120.00087 * 185.19283 * 14 4 2 17 17 C 1.52991 * 109.47319 * 174.10133 * 16 14 4 18 18 H 1.08996 * 109.47463 * 54.99607 * 17 16 14 19 19 C 1.53005 * 109.46972 * 294.99633 * 17 16 14 20 20 C 1.53000 * 109.47249 * 180.02562 * 19 17 16 21 21 C 1.53001 * 109.47112 * 59.99850 * 20 19 17 22 22 C 1.53005 * 109.47186 * 300.00188 * 21 20 19 23 23 H 1.08997 * 109.46922 * 180.02562 * 22 21 20 24 24 C 1.53006 * 109.47029 * 299.99828 * 22 21 20 25 25 C 1.52997 * 109.46903 * 59.99880 * 22 21 20 26 26 H 1.08995 * 109.47502 * 297.13485 * 1 2 3 27 27 H 1.09004 * 109.47212 * 57.13931 * 1 2 3 28 28 H 1.09006 * 109.47016 * 177.13213 * 1 2 3 29 29 H 1.09000 * 109.47161 * 240.00476 * 2 1 3 30 30 H 1.08997 * 109.47535 * 184.37821 * 3 2 1 31 31 H 1.08999 * 109.47351 * 304.38349 * 3 2 1 32 32 H 1.09005 * 109.47137 * 64.38160 * 3 2 1 33 33 H 1.09003 * 109.46778 * 30.00562 * 5 4 2 34 34 H 1.08998 * 109.47044 * 149.99968 * 5 4 2 35 35 H 0.96998 * 120.00301 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.46891 * 54.09399 * 16 14 4 37 37 H 1.09001 * 109.46331 * 294.10166 * 16 14 4 38 38 H 1.09000 * 109.46932 * 299.99750 * 19 17 16 39 39 H 1.09000 * 109.47415 * 59.99813 * 19 17 16 40 40 H 1.09001 * 109.47341 * 179.97438 * 20 19 17 41 41 H 1.08996 * 109.47071 * 299.99903 * 20 19 17 42 42 H 1.09006 * 109.47070 * 180.02562 * 21 20 19 43 43 H 1.08996 * 109.47109 * 60.00077 * 21 20 19 44 44 H 1.08991 * 109.47026 * 179.97438 * 24 22 21 45 45 H 1.09009 * 109.46613 * 60.00226 * 24 22 21 46 46 H 1.08997 * 109.47228 * 300.00760 * 24 22 21 47 47 H 1.09000 * 109.46856 * 60.00530 * 25 22 21 48 48 H 1.09001 * 109.46995 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.8248 -1.9063 1.0621 6 6 1.9191 -3.1105 1.0442 7 1 0.8497 -2.9832 1.1250 8 6 2.4557 -4.3750 0.9246 9 7 3.7579 -4.5302 0.8268 10 14 1.3328 -5.8677 0.9017 11 1 0.9415 -6.1714 -0.4982 12 1 2.0479 -7.0338 1.4799 13 1 0.1167 -5.5847 1.7054 14 6 1.7256 -0.2076 2.4198 15 8 0.9811 0.7429 2.5344 16 6 2.3234 -0.8485 3.6458 17 6 1.9532 -0.0275 4.8825 18 1 0.8702 0.0832 4.9343 19 6 2.6033 1.3545 4.7905 20 6 2.2337 2.1754 6.0276 21 6 2.7342 1.4589 7.2834 22 6 2.0842 0.0768 7.3754 23 1 2.4404 -0.4334 8.2702 24 6 0.5638 0.2323 7.4487 25 6 2.4539 -0.7440 6.1383 26 1 -0.3634 0.4687 0.9145 27 1 -0.3634 0.5576 -0.8633 28 1 -0.3633 -1.0264 -0.0514 29 1 1.8933 -0.5138 -0.8900 30 1 3.1271 1.4437 -0.0784 31 1 1.6139 1.9786 -0.8481 32 1 1.7421 1.9332 0.9267 33 1 3.3928 -1.8648 0.1327 34 1 3.5121 -1.9811 1.9048 35 1 4.1354 -5.4197 0.7430 36 1 3.4082 -0.8844 3.5446 37 1 1.9349 -1.8614 3.7523 38 1 3.6865 1.2438 4.7388 39 1 2.2471 1.8648 3.8956 40 1 2.6971 3.1598 5.9623 41 1 1.1506 2.2861 6.0798 42 1 2.4705 2.0435 8.1648 43 1 3.8173 1.3481 7.2312 44 1 0.1007 -0.7522 7.5138 45 1 0.2072 0.7427 6.5540 46 1 0.3004 0.8172 8.3300 47 1 3.5370 -0.8547 6.0862 48 1 1.9904 -1.7284 6.2036 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608814635.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:02 Heat of formation + Delta-G solvation = -78.919898 kcal Electronic energy + Delta-G solvation = -23898.964291 eV Core-core repulsion = 20759.133864 eV Total energy + Delta-G solvation = -3139.830428 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.78811 -38.50679 -35.33941 -33.42582 -32.54822 -31.49155 -31.06868 -27.18224 -26.67690 -26.58453 -26.40229 -22.90648 -22.09331 -21.99986 -20.45752 -18.46576 -17.79089 -16.59286 -15.94049 -15.63111 -14.98969 -14.73454 -14.43156 -14.22896 -14.13724 -13.69857 -13.28810 -12.97123 -12.73201 -12.50661 -12.43360 -12.25813 -11.88771 -11.67871 -11.60064 -11.44690 -11.33404 -11.23509 -11.07287 -10.90919 -10.87741 -10.82295 -10.66662 -10.51318 -10.34915 -10.06477 -9.93563 -9.76362 -9.71127 -9.62879 -8.64141 -8.48773 -7.61527 -6.16833 -4.23863 3.22817 3.30085 3.33282 3.54293 4.00931 4.34957 4.86965 4.87639 4.91987 5.15872 5.31021 5.35782 5.47062 5.53163 5.56242 5.64075 5.67964 5.74724 5.82442 5.83917 5.89481 5.97361 6.01286 6.05993 6.10941 6.14504 6.16455 6.24254 6.27202 6.37175 6.38705 6.41480 6.46494 6.49168 6.52792 6.62647 6.77514 6.81472 6.84777 6.90710 6.93143 7.22730 7.66815 7.79977 8.09048 8.45979 8.83613 9.15300 9.44369 10.89696 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014429 B = 0.005660 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.016651 B = 4945.391364 C = 6156.747862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.149 3.851 3 C -0.166 4.166 4 N -0.594 5.594 5 C 0.237 3.763 6 C -0.534 4.534 7 H 0.060 0.940 8 C 0.064 3.936 9 N -0.892 5.892 10 Si 0.895 3.105 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.521 3.479 15 O -0.569 6.569 16 C -0.133 4.133 17 C -0.069 4.069 18 H 0.078 0.922 19 C -0.115 4.115 20 C -0.117 4.117 21 C -0.113 4.113 22 C -0.089 4.089 23 H 0.063 0.937 24 C -0.152 4.152 25 C -0.111 4.111 26 H 0.075 0.925 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.032 0.968 34 H 0.039 0.961 35 H 0.265 0.735 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.051 0.949 39 H 0.078 0.922 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.065 0.935 46 H 0.047 0.953 47 H 0.060 0.940 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.460 9.530 8.158 12.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.045 3.955 3 C -0.224 4.224 4 N -0.325 5.325 5 C 0.117 3.883 6 C -0.573 4.573 7 H 0.079 0.921 8 C -0.138 4.138 9 N -0.531 5.531 10 Si 0.722 3.278 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.198 1.198 14 C 0.310 3.690 15 O -0.451 6.451 16 C -0.172 4.172 17 C -0.088 4.088 18 H 0.096 0.904 19 C -0.153 4.153 20 C -0.155 4.155 21 C -0.151 4.151 22 C -0.108 4.108 23 H 0.082 0.918 24 C -0.209 4.209 25 C -0.149 4.149 26 H 0.094 0.906 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.066 0.934 47 H 0.079 0.921 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.673 9.854 8.167 12.908 hybrid contribution -0.379 -1.239 -0.215 1.313 sum -2.052 8.616 7.952 11.903 Atomic orbital electron populations 1.22164 0.95853 1.01861 1.02313 1.20784 0.94166 0.92173 0.88420 1.22187 1.00313 0.97030 1.02851 1.48322 1.52239 1.27548 1.04371 1.19438 0.90476 0.80098 0.98300 1.21513 0.93833 0.90777 1.51150 0.92144 1.24936 0.95054 0.98979 0.94852 1.69919 1.10374 1.23283 1.49523 0.86546 0.80730 0.82137 0.78377 1.20554 1.21072 1.19799 1.20431 0.80712 0.83013 0.84822 1.90486 1.38047 1.29754 1.86859 1.21700 1.01987 1.01093 0.92456 1.20917 1.01094 0.94243 0.92539 0.90363 1.21644 0.99484 0.95750 0.98397 1.21534 1.01132 0.98045 0.94768 1.21570 0.99923 0.95852 0.97743 1.21065 0.95807 0.95963 0.97944 0.91831 1.21950 0.95635 1.01511 1.01772 1.21633 1.00919 0.98415 0.93892 0.90645 0.93331 0.92683 0.90246 0.93387 0.92794 0.90656 0.94979 0.94307 0.92579 0.89768 0.88355 0.93061 0.90369 0.92824 0.91855 0.92723 0.92308 0.92951 0.91617 0.93390 0.92076 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.19 37.16 0.34 -2.62 16 2 C 0.15 2.79 3.28 -67.93 -0.22 2.57 16 3 C -0.17 -2.74 9.16 37.16 0.34 -2.40 16 4 N -0.59 -12.39 2.41 -167.47 -0.40 -12.79 16 5 C 0.24 5.60 5.03 -5.20 -0.03 5.58 16 6 C -0.53 -13.86 9.39 -34.44 -0.32 -14.18 16 7 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -24.56 13.29 55.43 0.74 -23.82 16 10 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 14 C 0.52 10.44 6.67 -10.98 -0.07 10.37 16 15 O -0.57 -11.76 10.40 5.56 0.06 -11.70 16 16 C -0.13 -2.38 3.76 -27.88 -0.10 -2.48 16 17 C -0.07 -1.06 1.56 -90.62 -0.14 -1.20 16 18 H 0.08 1.29 6.16 -51.93 -0.32 0.97 16 19 C -0.12 -1.68 4.95 -26.73 -0.13 -1.81 16 20 C -0.12 -1.45 5.65 -26.73 -0.15 -1.60 16 21 C -0.11 -1.26 5.45 -26.73 -0.15 -1.41 16 22 C -0.09 -1.03 3.20 -90.62 -0.29 -1.32 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 C -0.15 -1.73 8.50 37.16 0.32 -1.41 16 25 C -0.11 -1.48 4.73 -26.73 -0.13 -1.60 16 26 H 0.07 1.47 6.07 -51.93 -0.32 1.15 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.08 1.50 7.78 -51.93 -0.40 1.09 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.35 6.09 -51.93 -0.32 1.04 16 33 H 0.03 0.80 7.90 -51.93 -0.41 0.39 16 34 H 0.04 0.94 6.28 -51.93 -0.33 0.61 16 35 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.08 1.49 7.27 -51.93 -0.38 1.11 16 37 H 0.10 1.90 8.14 -51.93 -0.42 1.47 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.31 6.17 -51.93 -0.32 0.99 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.80 6.43 -51.93 -0.33 0.47 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.82 4.81 -51.92 -0.25 0.57 16 46 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 357.97 15.07 5.39 5.39 Total: -1.00 -26.89 357.97 -8.91 -35.80 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -8.84 Total: 3.43 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -0.84 Total: -11.91 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.33 Total: -36.62 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.06 Total: -11.70 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -26.89 -8.91 -35.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814635.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.120 kcal (2) G-P(sol) polarization free energy of solvation -26.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds