Wall clock time and date at job start Tue Mar 31 2020 05:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00172 * 2 1 4 4 C 1.53005 * 109.46955 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47249 * 64.99911 * 4 3 2 6 6 C 1.46906 * 110.99574 * 66.04505 * 5 4 3 7 7 C 1.50703 * 109.46752 * 203.68513 * 6 5 4 8 8 H 1.07997 * 120.00369 * 0.25108 * 7 6 5 9 9 C 1.37881 * 119.99538 * 180.24344 * 7 6 5 10 10 N 1.31513 * 120.00188 * 5.10992 * 9 7 6 11 11 Si 1.86804 * 119.99619 * 185.10458 * 9 7 6 12 12 H 1.48495 * 109.47299 * 60.00234 * 11 9 7 13 13 H 1.48507 * 109.46841 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47403 * 300.00128 * 11 9 7 15 15 C 1.46901 * 111.00228 * 189.99779 * 5 4 3 16 16 C 1.53001 * 109.46950 * 162.35921 * 15 5 4 17 17 H 1.08998 * 109.35604 * 59.25628 * 16 15 5 18 18 C 1.50065 * 109.24234 * 178.90680 * 16 15 5 19 19 C 1.50702 * 117.96613 * 317.24629 * 18 16 15 20 20 C 1.29448 * 124.07806 * 137.27105 * 18 16 15 21 21 C 1.50071 * 124.07269 * 359.52757 * 20 18 16 22 22 C 1.53028 * 110.14351 * 17.13338 * 21 20 18 23 23 C 1.53015 * 109.35877 * 299.52592 * 16 15 5 24 24 H 1.09001 * 109.64566 * 70.81083 * 23 16 15 25 25 C 1.53000 * 109.64454 * 310.18082 * 23 16 15 26 26 H 1.08999 * 109.47750 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47143 * 300.00121 * 1 2 3 28 28 H 1.09000 * 109.47650 * 59.99231 * 1 2 3 29 29 H 1.08996 * 109.46990 * 60.00447 * 3 2 1 30 30 H 1.08997 * 109.46964 * 300.00058 * 3 2 1 31 31 H 1.09000 * 109.47069 * 304.99946 * 4 3 2 32 32 H 1.08996 * 109.47018 * 185.00470 * 4 3 2 33 33 H 1.09000 * 109.47426 * 323.68890 * 6 5 4 34 34 H 1.09005 * 109.46948 * 83.69104 * 6 5 4 35 35 H 0.96997 * 119.99831 * 179.97438 * 10 9 7 36 36 H 1.09001 * 109.46528 * 42.36323 * 15 5 4 37 37 H 1.08999 * 109.47248 * 282.36320 * 15 5 4 38 38 H 1.09004 * 109.47010 * 94.50976 * 19 18 16 39 39 H 1.08998 * 109.47286 * 214.51694 * 19 18 16 40 40 H 1.09001 * 109.46989 * 334.51530 * 19 18 16 41 41 H 1.08000 * 117.96474 * 179.50889 * 20 18 16 42 42 H 1.09001 * 109.36104 * 256.92943 * 21 20 18 43 43 H 1.08996 * 109.35971 * 137.33703 * 21 20 18 44 44 H 1.09006 * 109.63668 * 190.87881 * 22 21 20 45 45 H 1.08993 * 109.64697 * 70.24988 * 22 21 20 46 46 H 1.08996 * 109.47151 * 301.05537 * 25 23 16 47 47 H 1.09003 * 109.47096 * 61.05820 * 25 23 16 48 48 H 1.09006 * 109.46971 * 181.05769 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9769 0.5626 -1.2561 6 6 3.6950 1.4355 -2.4036 7 6 3.6005 0.6033 -3.6565 8 1 3.7323 -0.4673 -3.6049 9 6 3.3457 1.2090 -4.8686 10 7 3.2848 2.5203 -4.9487 11 14 3.0870 0.1669 -6.3972 12 1 1.9220 -0.7310 -6.1929 13 1 2.8322 1.0518 -7.5623 14 1 4.3017 -0.6485 -6.6519 15 6 5.4026 0.2135 -1.1980 16 6 5.7249 -0.7997 -2.2982 17 1 5.4837 -0.3675 -3.2693 18 6 7.1874 -1.1324 -2.2512 19 6 8.1631 -0.0021 -2.0471 20 6 7.6633 -2.3297 -2.3757 21 6 6.8183 -3.5539 -2.5741 22 6 5.4117 -3.1556 -3.0266 23 6 4.8897 -2.0638 -2.0840 24 1 3.8439 -1.8547 -2.3092 25 6 5.0245 -2.5296 -0.6329 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.6887 1.8463 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.8514 0.5681 0.8409 32 1 3.9786 2.1763 0.0890 33 1 2.7511 1.9559 -2.2410 34 1 4.4981 2.1646 -2.5114 35 1 3.1059 2.9463 -5.8015 36 1 5.6306 -0.2218 -0.2250 37 1 6.0028 1.1116 -1.3439 38 1 8.3976 0.0883 -0.9864 39 1 9.0769 -0.2055 -2.6053 40 1 7.7203 0.9286 -2.4018 41 1 8.7352 -2.4555 -2.3344 42 1 6.7535 -4.1043 -1.6355 43 1 7.2753 -4.1895 -3.3325 44 1 4.7533 -4.0233 -2.9826 45 1 5.4496 -2.7721 -4.0461 46 1 6.0730 -2.7282 -0.4109 47 1 4.6529 -1.7519 0.0344 48 1 4.4437 -3.4406 -0.4882 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615504217.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:33 Heat of formation + Delta-G solvation = -36.227689 kcal Electronic energy + Delta-G solvation = -24407.626742 eV Core-core repulsion = 21269.647587 eV Total energy + Delta-G solvation = -3137.979155 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.36850 -37.57396 -35.87443 -32.93408 -32.51119 -31.52853 -29.07968 -27.25601 -26.71594 -26.10455 -25.59964 -23.94648 -22.64701 -20.92566 -20.22224 -19.26737 -16.84590 -16.10085 -15.78615 -15.47105 -15.17707 -14.81236 -14.58623 -14.31495 -14.07395 -13.96541 -13.12403 -13.05116 -12.69741 -12.53163 -12.16768 -12.10052 -11.97692 -11.71046 -11.62211 -11.33528 -11.30818 -11.15295 -11.02602 -10.84453 -10.66572 -10.60360 -10.44980 -10.17593 -9.86407 -9.48239 -9.40788 -9.32138 -9.13830 -8.97041 -8.33438 -8.09696 -7.09131 -5.97042 -3.93907 2.77174 3.36747 3.40613 3.44526 4.33001 4.47265 4.89714 5.24359 5.31122 5.36990 5.50764 5.54075 5.65627 5.67313 5.77131 5.82023 5.83003 5.86063 5.94120 5.96423 5.99553 6.00253 6.05723 6.09089 6.17305 6.21769 6.27890 6.30137 6.39635 6.43134 6.46547 6.51055 6.59678 6.66825 6.88449 6.97873 7.11186 7.23766 7.35754 7.38414 7.44329 7.59759 7.71703 7.94825 8.21035 8.31146 8.63864 9.12848 9.67307 11.13267 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.010498 B = 0.008469 C = 0.006123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.565090 B = 3305.573685 C = 4572.102224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.369 6.369 3 C 0.067 3.933 4 C 0.059 3.941 5 N -0.523 5.523 6 C 0.189 3.811 7 C -0.497 4.497 8 H 0.077 0.923 9 C 0.054 3.946 10 N -0.901 5.901 11 Si 0.887 3.113 12 H -0.276 1.276 13 H -0.290 1.290 14 H -0.276 1.276 15 C 0.080 3.920 16 C -0.055 4.055 17 H 0.123 0.877 18 C -0.097 4.097 19 C -0.122 4.122 20 C -0.185 4.185 21 C -0.080 4.080 22 C -0.120 4.120 23 C -0.069 4.069 24 H 0.093 0.907 25 C -0.139 4.139 26 H 0.078 0.922 27 H 0.028 0.972 28 H 0.039 0.961 29 H 0.036 0.964 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.033 0.967 33 H 0.026 0.974 34 H -0.008 1.008 35 H 0.259 0.741 36 H 0.054 0.946 37 H 0.022 0.978 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.045 0.955 47 H 0.059 0.941 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.092 -6.184 8.887 11.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.287 6.287 3 C -0.010 4.010 4 C -0.070 4.070 5 N -0.247 5.247 6 C 0.064 3.936 7 C -0.535 4.535 8 H 0.095 0.905 9 C -0.146 4.146 10 N -0.541 5.541 11 Si 0.715 3.285 12 H -0.202 1.202 13 H -0.216 1.216 14 H -0.202 1.202 15 C -0.049 4.049 16 C -0.073 4.073 17 H 0.140 0.860 18 C -0.097 4.097 19 C -0.179 4.179 20 C -0.203 4.203 21 C -0.117 4.117 22 C -0.157 4.157 23 C -0.087 4.087 24 H 0.111 0.889 25 C -0.197 4.197 26 H 0.097 0.903 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.010 0.990 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.064 0.936 47 H 0.078 0.922 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.912 -6.625 8.699 11.315 hybrid contribution 0.155 0.645 -0.848 1.077 sum 3.066 -5.980 7.851 10.334 Atomic orbital electron populations 1.22635 0.82647 1.01923 0.99167 1.87986 1.18048 1.27520 1.95132 1.22629 0.94061 0.84905 0.99364 1.21979 0.93292 0.97215 0.94474 1.62044 1.15781 1.44940 1.01972 1.19859 0.95626 0.90868 0.87266 1.21357 1.46584 0.94825 0.90754 0.90529 1.24976 0.96008 0.94760 0.98897 1.69953 1.50242 1.08322 1.25557 0.86726 0.78939 0.80249 0.82581 1.20188 1.21618 1.20178 1.21960 0.88818 0.96616 0.97464 1.20387 0.88754 0.95564 1.02569 0.86003 1.21111 0.96516 0.94361 0.97725 1.20971 0.97664 0.98321 1.00949 1.21668 0.98415 0.94193 1.06000 1.20335 0.95300 0.95759 1.00300 1.21701 0.95302 0.98760 0.99948 1.20966 1.01084 0.92955 0.93709 0.88915 1.21854 1.00091 1.00170 0.97539 0.90341 0.95302 0.94255 0.94633 0.92271 0.91626 0.94873 0.95630 0.99005 0.93123 0.92809 0.95999 0.92230 0.92799 0.91513 0.89174 0.91706 0.92596 0.92679 0.92053 0.93622 0.92172 0.94297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.37 -6.76 10.65 -35.23 -0.38 -7.13 16 3 C 0.07 1.17 6.02 37.16 0.22 1.40 16 4 C 0.06 1.06 5.32 -3.82 -0.02 1.04 16 5 N -0.52 -10.78 3.85 -236.06 -0.91 -11.69 16 6 C 0.19 4.67 4.62 -4.97 -0.02 4.65 16 7 C -0.50 -13.18 7.11 -34.44 -0.24 -13.42 16 8 H 0.08 2.00 4.48 -52.49 -0.24 1.76 16 9 C 0.05 1.50 5.45 -17.82 -0.10 1.40 16 10 N -0.90 -26.16 13.29 55.43 0.74 -25.42 16 11 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 C 0.08 1.50 3.35 -3.82 -0.01 1.49 16 16 C -0.05 -1.04 1.56 -92.07 -0.14 -1.18 16 17 H 0.12 2.79 5.14 -51.93 -0.27 2.52 16 18 C -0.10 -1.61 5.07 -100.94 -0.51 -2.12 16 19 C -0.12 -1.83 8.87 36.01 0.32 -1.51 16 20 C -0.18 -2.82 8.71 -35.90 -0.31 -3.13 16 21 C -0.08 -1.16 5.48 -28.17 -0.15 -1.31 16 22 C -0.12 -1.96 5.65 -26.51 -0.15 -2.11 16 23 C -0.07 -1.24 2.18 -90.41 -0.20 -1.44 16 24 H 0.09 1.95 6.61 -51.93 -0.34 1.61 16 25 C -0.14 -2.24 7.83 37.16 0.29 -1.95 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 1.15 6.08 -51.93 -0.32 0.84 16 31 H 0.07 1.08 7.85 -51.93 -0.41 0.67 16 32 H 0.03 0.57 8.12 -51.93 -0.42 0.15 16 33 H 0.03 0.68 5.78 -51.93 -0.30 0.38 16 34 H -0.01 -0.21 7.68 -51.93 -0.40 -0.61 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.05 0.93 5.94 -51.93 -0.31 0.63 16 37 H 0.02 0.43 6.29 -51.93 -0.33 0.10 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.72 7.98 -51.93 -0.41 0.31 16 40 H 0.07 1.08 7.12 -51.93 -0.37 0.71 16 41 H 0.09 1.24 7.85 -52.49 -0.41 0.83 16 42 H 0.06 0.88 6.93 -51.93 -0.36 0.52 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 46 H 0.04 0.69 5.71 -51.93 -0.30 0.40 16 47 H 0.06 1.02 6.38 -51.93 -0.33 0.69 16 48 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 354.41 15.07 5.34 5.34 Total: -1.00 -28.42 354.41 -8.59 -37.02 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -8.45 Total: 2.04 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 0.08 Total: -16.61 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: -0.17 Total: -37.11 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.38 Total: -7.13 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.42 -8.59 -37.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615504217.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.790 kcal (2) G-P(sol) polarization free energy of solvation -28.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds