Wall clock time and date at job start Tue Mar 31 2020 05:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00008 * 2 1 4 4 C 1.52996 * 109.47498 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.47340 * 67.53450 * 4 3 2 6 6 C 1.46889 * 111.00350 * 196.19956 * 5 4 3 7 7 C 1.50709 * 109.47238 * 66.04990 * 6 5 4 8 8 H 1.08004 * 119.99591 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00108 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99788 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00041 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47015 * 269.99979 * 11 9 7 13 13 H 1.48502 * 109.47128 * 30.00348 * 11 9 7 14 14 H 1.48507 * 109.46787 * 150.00185 * 11 9 7 15 15 C 1.46902 * 110.99468 * 72.24653 * 5 4 3 16 16 C 1.53001 * 109.46947 * 190.34154 * 15 5 4 17 17 H 1.09003 * 109.35421 * 305.42028 * 16 15 5 18 18 C 1.50065 * 109.36091 * 65.00575 * 16 15 5 19 19 C 1.50701 * 117.96271 * 317.31959 * 18 16 15 20 20 C 1.29439 * 124.07478 * 137.33828 * 18 16 15 21 21 C 1.50073 * 124.07763 * 359.53678 * 20 18 16 22 22 C 1.53019 * 110.14458 * 17.12493 * 21 20 18 23 23 C 1.53023 * 109.36085 * 185.69891 * 16 15 5 24 24 H 1.08999 * 109.63994 * 310.25335 * 23 16 15 25 25 C 1.53007 * 109.64207 * 70.66780 * 23 16 15 26 26 H 1.09003 * 109.47006 * 59.99641 * 1 2 3 27 27 H 1.08998 * 109.46863 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47096 * 300.00086 * 1 2 3 29 29 H 1.09002 * 109.47257 * 59.99782 * 3 2 1 30 30 H 1.09005 * 109.47119 * 300.00674 * 3 2 1 31 31 H 1.09005 * 109.46860 * 307.53783 * 4 3 2 32 32 H 1.09001 * 109.47448 * 187.53992 * 4 3 2 33 33 H 1.08998 * 109.47777 * 306.05058 * 6 5 4 34 34 H 1.09002 * 109.47267 * 186.04579 * 6 5 4 35 35 H 0.96999 * 119.99886 * 179.97438 * 10 9 7 36 36 H 1.09003 * 109.47273 * 310.33544 * 15 5 4 37 37 H 1.08993 * 109.47114 * 70.34326 * 15 5 4 38 38 H 1.08996 * 109.47009 * 84.71975 * 19 18 16 39 39 H 1.09005 * 109.46662 * 204.71805 * 19 18 16 40 40 H 1.09000 * 109.46657 * 324.71410 * 19 18 16 41 41 H 1.08003 * 117.96166 * 179.55535 * 20 18 16 42 42 H 1.09000 * 109.35336 * 256.92297 * 21 20 18 43 43 H 1.08996 * 109.24825 * 137.26614 * 21 20 18 44 44 H 1.09004 * 109.64222 * 190.87840 * 22 21 20 45 45 H 1.08998 * 109.64089 * 70.25394 * 22 21 20 46 46 H 1.08992 * 109.46943 * 60.00259 * 25 23 16 47 47 H 1.08998 * 109.46925 * 180.02562 * 25 23 16 48 48 H 1.09000 * 109.47000 * 300.00428 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 3.9814 0.6188 -1.2808 6 6 5.3644 0.1327 -1.1883 7 6 5.4235 -1.0367 -0.2394 8 1 4.5236 -1.3837 0.2466 9 6 6.6265 -1.6628 0.0090 10 7 6.6779 -2.6836 0.8366 11 14 8.1831 -1.0622 -0.8311 12 1 8.3590 -1.7801 -2.1190 13 1 8.0756 0.3965 -1.0880 14 1 9.3521 -1.3255 0.0461 15 6 3.8389 1.5974 -2.3671 16 6 4.0636 0.9030 -3.7118 17 1 5.0277 0.3946 -3.6992 18 6 2.9756 -0.1053 -3.9390 19 6 2.5608 -0.9711 -2.7773 20 6 2.3716 -0.2779 -5.0707 21 6 2.6679 0.5130 -6.3112 22 6 4.0204 1.2160 -6.1774 23 6 4.0557 1.9478 -4.8298 24 1 3.1757 2.5833 -4.7312 25 6 5.3208 2.8040 -4.7425 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6885 1.8465 -0.8900 31 1 3.8486 0.5317 0.8140 32 1 3.9782 2.1717 0.1342 33 1 6.0068 0.9324 -0.8197 34 1 5.7057 -0.1822 -2.1745 35 1 7.5242 -3.1243 1.0111 36 1 2.8364 2.0247 -2.3420 37 1 4.5754 2.3907 -2.2403 38 1 1.8238 -0.4410 -2.1741 39 1 2.1252 -1.8974 -3.1520 40 1 3.4334 -1.2011 -2.1659 41 1 1.6065 -1.0382 -5.1256 42 1 1.8864 1.2583 -6.4597 43 1 2.6934 -0.1595 -7.1686 44 1 4.1415 1.9347 -6.9880 45 1 4.8220 0.4784 -6.2150 46 1 6.1987 2.1669 -4.8489 47 1 5.3121 3.5473 -5.5397 48 1 5.3524 3.3079 -3.7765 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615504233.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:37 Heat of formation + Delta-G solvation = -34.750727 kcal Electronic energy + Delta-G solvation = -24306.891523 eV Core-core repulsion = 21168.976414 eV Total energy + Delta-G solvation = -3137.915109 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -39.46143 -37.63687 -36.08190 -33.26693 -32.53457 -31.70161 -29.53977 -28.21079 -26.58930 -25.75869 -25.59271 -23.91943 -22.05714 -21.44731 -20.36521 -19.59060 -17.39014 -16.84261 -15.99512 -15.83522 -15.15490 -14.78694 -14.44628 -14.21069 -14.15423 -13.72802 -13.54631 -13.25734 -12.88330 -12.65071 -12.34868 -12.16505 -12.06293 -12.00665 -11.76679 -11.57788 -11.32468 -11.25686 -11.13641 -11.05697 -10.70882 -10.65802 -10.50187 -10.36582 -9.97087 -9.88487 -9.70454 -9.64697 -9.27672 -9.08782 -8.50974 -8.12277 -7.15259 -5.99249 -3.95495 2.80533 3.30741 3.38324 3.39699 4.25228 4.46024 4.64387 4.91644 4.92957 5.08811 5.31985 5.37441 5.44576 5.50899 5.54527 5.57476 5.65252 5.68484 5.72689 5.73269 5.77510 5.86071 5.91817 5.94263 5.98984 6.00757 6.06826 6.11389 6.17890 6.22628 6.33343 6.34005 6.50995 6.62970 6.68202 6.77147 6.93272 6.95240 7.00839 7.16049 7.42350 7.60472 7.69500 7.84560 7.96582 8.12855 8.72128 9.14562 9.63137 11.13782 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.011365 B = 0.007757 C = 0.005573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.084790 B = 3608.837113 C = 5023.401475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.359 6.359 3 C 0.070 3.930 4 C 0.058 3.942 5 N -0.509 5.509 6 C 0.158 3.842 7 C -0.504 4.504 8 H 0.087 0.913 9 C 0.069 3.931 10 N -0.900 5.900 11 Si 0.868 3.132 12 H -0.277 1.277 13 H -0.268 1.268 14 H -0.288 1.288 15 C 0.059 3.941 16 C -0.048 4.048 17 H 0.086 0.914 18 C -0.072 4.072 19 C -0.119 4.119 20 C -0.208 4.208 21 C -0.079 4.079 22 C -0.113 4.113 23 C -0.086 4.086 24 H 0.068 0.932 25 C -0.148 4.148 26 H 0.032 0.968 27 H 0.081 0.919 28 H 0.031 0.969 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.101 0.899 32 H 0.033 0.967 33 H -0.015 1.015 34 H 0.027 0.973 35 H 0.262 0.738 36 H 0.062 0.938 37 H 0.025 0.975 38 H 0.074 0.926 39 H 0.026 0.974 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.050 0.950 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.088 10.597 -9.501 16.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C -0.008 4.008 4 C -0.071 4.071 5 N -0.232 5.232 6 C 0.032 3.968 7 C -0.542 4.542 8 H 0.105 0.895 9 C -0.132 4.132 10 N -0.539 5.539 11 Si 0.696 3.304 12 H -0.202 1.202 13 H -0.193 1.193 14 H -0.214 1.214 15 C -0.069 4.069 16 C -0.066 4.066 17 H 0.104 0.896 18 C -0.072 4.072 19 C -0.175 4.175 20 C -0.226 4.226 21 C -0.116 4.116 22 C -0.151 4.151 23 C -0.105 4.105 24 H 0.086 0.914 25 C -0.205 4.205 26 H 0.051 0.949 27 H 0.099 0.901 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.120 0.880 32 H 0.051 0.949 33 H 0.003 0.997 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.043 0.957 38 H 0.093 0.907 39 H 0.045 0.955 40 H 0.128 0.872 41 H 0.113 0.887 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.143 9.886 -9.510 16.485 hybrid contribution 1.178 1.127 -0.284 1.655 sum -7.965 11.013 -9.794 16.753 Atomic orbital electron populations 1.22666 0.82991 1.02176 0.98844 1.88144 1.17634 1.27119 1.94818 1.22598 0.94927 0.84874 0.98365 1.22058 0.91741 0.98238 0.95025 1.62197 1.25039 1.33713 1.02296 1.20234 0.83930 0.95336 0.97272 1.21083 0.96002 1.12494 1.24641 0.89541 1.24881 0.98474 0.94816 0.95031 1.69895 1.26034 1.21926 1.36035 0.86974 0.83869 0.79688 0.79900 1.20245 1.19338 1.21373 1.22151 0.99666 0.93477 0.91622 1.20156 0.98638 0.94302 0.93539 0.89636 1.21023 0.94701 0.95954 0.95483 1.21238 1.04576 0.95676 0.96051 1.21723 1.03238 1.03077 0.94544 1.20299 0.96719 0.98051 0.96547 1.21641 0.97734 0.99086 0.96592 1.21188 0.98154 0.96279 0.94847 0.91377 1.21873 0.97750 0.99487 1.01419 0.94913 0.90092 0.95049 0.94290 0.94232 0.88038 0.94874 0.99737 0.95498 0.92819 0.91984 0.95697 0.90744 0.95481 0.87179 0.88694 0.92123 0.92132 0.92315 0.91858 0.92672 0.93075 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.36 -6.23 8.82 -35.23 -0.31 -6.54 16 3 C 0.07 1.08 5.97 37.16 0.22 1.31 16 4 C 0.06 1.05 5.19 -3.82 -0.02 1.04 16 5 N -0.51 -9.95 1.40 -236.07 -0.33 -10.29 16 6 C 0.16 3.68 3.03 -4.98 -0.02 3.67 16 7 C -0.50 -13.90 8.52 -34.44 -0.29 -14.19 16 8 H 0.09 2.63 7.50 -52.48 -0.39 2.24 16 9 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 10 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 11 Si 0.87 21.42 27.47 -169.99 -4.67 16.75 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 13 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 C 0.06 0.98 3.92 -3.82 -0.01 0.97 16 16 C -0.05 -0.78 1.78 -92.07 -0.16 -0.94 16 17 H 0.09 1.58 6.12 -51.93 -0.32 1.26 16 18 C -0.07 -1.20 5.48 -100.94 -0.55 -1.75 16 19 C -0.12 -2.22 8.20 36.01 0.30 -1.93 16 20 C -0.21 -3.11 9.37 -35.90 -0.34 -3.44 16 21 C -0.08 -0.99 6.12 -28.18 -0.17 -1.16 16 22 C -0.11 -1.40 5.31 -26.52 -0.14 -1.54 16 23 C -0.09 -1.13 2.20 -90.40 -0.20 -1.33 16 24 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 25 C -0.15 -1.82 9.04 37.16 0.34 -1.48 16 26 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.58 6.40 -51.93 -0.33 0.24 16 31 H 0.10 2.18 6.59 -51.93 -0.34 1.83 16 32 H 0.03 0.56 8.05 -51.93 -0.42 0.14 16 33 H -0.02 -0.36 7.18 -51.93 -0.37 -0.73 16 34 H 0.03 0.64 5.44 -51.93 -0.28 0.36 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.06 0.96 6.31 -51.93 -0.33 0.63 16 37 H 0.02 0.41 6.56 -51.93 -0.34 0.07 16 38 H 0.07 1.37 5.92 -51.93 -0.31 1.07 16 39 H 0.03 0.48 7.79 -51.93 -0.40 0.08 16 40 H 0.11 2.46 5.52 -51.93 -0.29 2.17 16 41 H 0.09 1.39 7.74 -52.48 -0.41 0.98 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.71 6.68 -51.93 -0.35 0.36 16 LS Contribution 354.59 15.07 5.34 5.34 Total: -1.00 -29.44 354.59 -7.93 -37.37 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -8.69 Total: 1.43 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -0.04 Total: -17.39 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.44 Total: -36.96 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.31 Total: -6.54 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.44 -7.93 -37.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615504233.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.616 kcal (2) G-P(sol) polarization free energy of solvation -29.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds