Wall clock time and date at job start Tue Mar 31 2020 05:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00434 * 2 1 4 4 C 1.52999 * 109.47349 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.46858 * 66.99115 * 4 3 2 6 6 C 1.46905 * 110.99801 * 158.50796 * 5 4 3 7 7 C 1.50693 * 109.47436 * 288.39135 * 6 5 4 8 8 H 1.08006 * 120.00000 * 1.45788 * 7 6 5 9 9 C 1.37880 * 120.00132 * 181.45694 * 7 6 5 10 10 N 1.31511 * 120.00028 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 119.99799 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47042 * 90.00187 * 11 9 7 13 13 H 1.48498 * 109.46909 * 209.99644 * 11 9 7 14 14 H 1.48493 * 109.47283 * 329.99872 * 11 9 7 15 15 C 1.46897 * 111.00254 * 282.46052 * 5 4 3 16 16 C 1.52996 * 109.47276 * 168.89727 * 15 5 4 17 17 H 1.08999 * 109.23977 * 54.66037 * 16 15 5 18 18 C 1.50064 * 109.36272 * 295.00370 * 16 15 5 19 19 C 1.50701 * 117.96035 * 42.68322 * 18 16 15 20 20 C 1.29436 * 124.07961 * 222.40093 * 18 16 15 21 21 C 1.50068 * 124.07535 * 0.72941 * 20 18 16 22 22 C 1.53027 * 110.14354 * 342.86712 * 21 20 18 23 23 C 1.53182 * 109.26138 * 174.47854 * 16 15 5 24 24 H 1.09000 * 109.83502 * 50.15546 * 23 16 15 25 25 C 1.52997 * 109.75814 * 289.54473 * 23 16 15 26 26 H 1.08997 * 109.46713 * 60.00056 * 1 2 3 27 27 H 1.09004 * 109.47245 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46877 * 300.00080 * 1 2 3 29 29 H 1.09004 * 109.46654 * 59.99692 * 3 2 1 30 30 H 1.09000 * 109.46991 * 300.00552 * 3 2 1 31 31 H 1.08999 * 109.46993 * 306.99138 * 4 3 2 32 32 H 1.08997 * 109.47131 * 186.99104 * 4 3 2 33 33 H 1.09002 * 109.46810 * 48.39175 * 6 5 4 34 34 H 1.08998 * 109.46962 * 168.38833 * 6 5 4 35 35 H 0.96997 * 120.00147 * 180.02562 * 10 9 7 36 36 H 1.09001 * 109.46772 * 48.90140 * 15 5 4 37 37 H 1.08991 * 109.47328 * 288.90558 * 15 5 4 38 38 H 1.09001 * 109.47424 * 179.73506 * 19 18 16 39 39 H 1.09003 * 109.47448 * 59.73051 * 19 18 16 40 40 H 1.08997 * 109.47319 * 299.73714 * 19 18 16 41 41 H 1.08003 * 117.96793 * 180.75110 * 20 18 16 42 42 H 1.08991 * 109.36218 * 103.07747 * 21 20 18 43 43 H 1.09002 * 109.36251 * 222.66461 * 21 20 18 44 44 H 1.09001 * 109.64028 * 169.12324 * 22 21 20 45 45 H 1.08999 * 109.64568 * 289.75048 * 22 21 20 46 46 H 1.08993 * 109.47343 * 301.15190 * 25 23 16 47 47 H 1.08998 * 109.47412 * 61.15352 * 25 23 16 48 48 H 1.08999 * 109.47302 * 181.15168 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9813 0.6059 -1.2739 6 6 5.3901 0.9304 -1.5351 7 6 5.5133 2.3920 -1.8807 8 1 4.6364 3.0226 -1.8809 9 6 6.7454 2.9243 -2.1965 10 7 6.8528 4.1997 -2.4985 11 14 8.2617 1.8334 -2.1967 12 1 8.4473 1.2440 -3.5470 13 1 9.4545 2.6439 -1.8423 14 1 8.0889 0.7454 -1.2010 15 6 3.7624 -0.8464 -1.2980 16 6 3.9742 -1.3706 -2.7196 17 1 4.9602 -1.0669 -3.0713 18 6 2.9243 -0.7945 -3.6239 19 6 2.5845 0.6658 -3.4716 20 6 2.2962 -1.4724 -4.5301 21 6 2.5187 -2.9331 -4.7926 22 6 3.8404 -3.3854 -4.1679 23 6 3.8810 -2.8996 -2.7136 24 1 2.9736 -3.2127 -2.1972 25 6 5.1037 -3.4896 -2.0081 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8463 -0.8899 31 1 3.8485 0.5396 0.8217 32 1 3.9782 2.1726 0.1257 33 1 5.9832 0.7160 -0.6460 34 1 5.7532 0.3282 -2.3680 35 1 7.7195 4.5741 -2.7211 36 1 2.7438 -1.0656 -0.9779 37 1 4.4675 -1.3314 -0.6230 38 1 1.8150 0.9371 -4.1943 39 1 3.4766 1.2668 -3.6479 40 1 2.2163 0.8498 -2.4624 41 1 1.5666 -0.9547 -5.1352 42 1 1.6994 -3.5070 -4.3598 43 1 2.5497 -3.1064 -5.8683 44 1 3.9041 -4.4733 -4.1927 45 1 4.6742 -2.9539 -4.7217 46 1 6.0097 -3.1687 -2.5221 47 1 5.1298 -3.1426 -0.9751 48 1 5.0428 -4.5777 -2.0244 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615504234.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:44 Heat of formation + Delta-G solvation = -36.635614 kcal Electronic energy + Delta-G solvation = -24388.578675 eV Core-core repulsion = 21250.581831 eV Total energy + Delta-G solvation = -3137.996844 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 4.80 seconds Orbital eigenvalues (eV) -39.40509 -37.77927 -36.00405 -33.23888 -32.54718 -31.67258 -29.59633 -28.16549 -26.60158 -25.77077 -25.75387 -23.76497 -22.19084 -21.21168 -20.30698 -19.69404 -17.34524 -16.86015 -16.18086 -15.85448 -15.18510 -14.84242 -14.41974 -14.31553 -14.02390 -13.67105 -13.55308 -13.25673 -12.88880 -12.62001 -12.34728 -12.14148 -12.05845 -11.91297 -11.64815 -11.59394 -11.39534 -11.16814 -11.09224 -11.03414 -10.77907 -10.75025 -10.49782 -10.39394 -9.98549 -9.86689 -9.70783 -9.63378 -9.27073 -9.19351 -8.54261 -8.11883 -7.14030 -6.04191 -4.00246 2.85230 3.28923 3.36725 3.39101 4.09524 4.43318 4.70581 4.98075 5.00073 5.14534 5.29076 5.37337 5.46412 5.48594 5.59283 5.63939 5.68781 5.73103 5.75692 5.77078 5.78221 5.83583 5.92636 6.04445 6.06957 6.09383 6.16656 6.21740 6.27390 6.35155 6.42351 6.46616 6.52347 6.59431 6.71607 6.84543 6.88959 6.94156 7.04109 7.12438 7.36517 7.44913 7.65152 7.74572 8.00576 8.11854 8.69539 9.05291 9.59076 11.08892 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.012315 B = 0.007399 C = 0.005653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.061193 B = 3783.213829 C = 4951.751551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.065 3.935 4 C 0.061 3.939 5 N -0.515 5.515 6 C 0.157 3.843 7 C -0.504 4.504 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.901 5.901 11 Si 0.869 3.131 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.268 1.268 15 C 0.054 3.946 16 C -0.048 4.048 17 H 0.082 0.918 18 C -0.066 4.066 19 C -0.114 4.114 20 C -0.208 4.208 21 C -0.078 4.078 22 C -0.114 4.114 23 C -0.085 4.085 24 H 0.069 0.931 25 C -0.147 4.147 26 H 0.038 0.962 27 H 0.077 0.923 28 H 0.033 0.967 29 H 0.042 0.958 30 H 0.060 0.940 31 H 0.028 0.972 32 H 0.101 0.899 33 H -0.015 1.015 34 H 0.026 0.974 35 H 0.262 0.738 36 H 0.094 0.906 37 H 0.020 0.980 38 H 0.025 0.975 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.053 0.947 47 H 0.056 0.944 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.023 -12.870 1.581 16.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C -0.011 4.011 4 C -0.067 4.067 5 N -0.239 5.239 6 C 0.031 3.969 7 C -0.542 4.542 8 H 0.099 0.901 9 C -0.132 4.132 10 N -0.540 5.540 11 Si 0.697 3.303 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.193 1.193 15 C -0.074 4.074 16 C -0.066 4.066 17 H 0.100 0.900 18 C -0.066 4.066 19 C -0.170 4.170 20 C -0.227 4.227 21 C -0.115 4.115 22 C -0.151 4.151 23 C -0.104 4.104 24 H 0.088 0.912 25 C -0.205 4.205 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.119 0.881 33 H 0.003 0.997 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.038 0.962 38 H 0.044 0.956 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.051 -12.669 1.158 16.213 hybrid contribution 1.238 -0.528 0.484 1.430 sum -8.813 -13.197 1.642 15.954 Atomic orbital electron populations 1.22651 0.82449 1.01923 0.99495 1.87896 1.18558 1.28790 1.95174 1.22767 0.94613 0.84058 0.99706 1.22084 0.92039 1.01587 0.91012 1.62182 1.22354 1.09157 1.30206 1.20247 0.83993 0.97829 0.94864 1.21030 0.95223 0.92227 1.45705 0.90109 1.24879 0.98572 0.94749 0.95028 1.69886 1.24582 1.12052 1.47494 0.86946 0.83369 0.81111 0.78873 1.20233 1.21342 1.19280 1.22392 1.01908 0.88885 0.94233 1.20180 0.98520 0.92662 0.95232 0.89991 1.20893 0.94841 0.96702 0.94155 1.21170 1.01383 0.92328 1.02129 1.21699 1.03769 0.95587 1.01604 1.20284 0.97051 0.94444 0.99745 1.21655 0.97902 0.99628 0.95932 1.21196 0.98443 0.95123 0.95598 0.91210 1.21861 0.98018 0.99855 1.00736 0.94299 0.90427 0.94792 0.93989 0.92188 0.95389 0.88096 0.99686 0.95578 0.92772 0.88761 0.96192 0.95606 0.89911 0.89168 0.88788 0.92113 0.92219 0.92381 0.91955 0.92805 0.92483 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.48 16 2 O -0.38 -5.77 7.87 -35.23 -0.28 -6.05 16 3 C 0.07 1.00 5.54 37.16 0.21 1.21 16 4 C 0.06 1.11 5.37 -3.83 -0.02 1.09 16 5 N -0.52 -10.13 1.31 -236.08 -0.31 -10.44 16 6 C 0.16 3.65 3.55 -4.98 -0.02 3.63 16 7 C -0.50 -13.64 8.90 -34.44 -0.31 -13.95 16 8 H 0.08 2.37 7.90 -52.48 -0.41 1.95 16 9 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 10 N -0.90 -27.10 13.96 55.43 0.77 -26.32 16 11 Si 0.87 21.38 27.44 -169.99 -4.66 16.72 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.27 -6.39 6.58 56.52 0.37 -6.02 16 15 C 0.05 0.94 3.69 -3.83 -0.01 0.93 16 16 C -0.05 -0.80 1.82 -91.99 -0.17 -0.97 16 17 H 0.08 1.57 6.10 -51.93 -0.32 1.26 16 18 C -0.07 -1.12 5.48 -100.94 -0.55 -1.67 16 19 C -0.11 -2.08 8.36 36.01 0.30 -1.78 16 20 C -0.21 -3.17 9.40 -35.90 -0.34 -3.51 16 21 C -0.08 -1.00 6.12 -28.17 -0.17 -1.18 16 22 C -0.11 -1.46 5.30 -26.52 -0.14 -1.60 16 23 C -0.08 -1.18 2.19 -90.33 -0.20 -1.38 16 24 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 25 C -0.15 -1.92 9.03 37.16 0.34 -1.59 16 26 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.96 6.88 -51.93 -0.36 0.60 16 31 H 0.03 0.50 7.97 -51.93 -0.41 0.08 16 32 H 0.10 2.01 6.99 -51.93 -0.36 1.64 16 33 H -0.01 -0.35 7.22 -51.93 -0.37 -0.73 16 34 H 0.03 0.63 5.28 -51.93 -0.27 0.35 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.09 1.63 5.15 -51.93 -0.27 1.37 16 37 H 0.02 0.36 6.57 -51.93 -0.34 0.02 16 38 H 0.02 0.43 7.56 -51.93 -0.39 0.03 16 39 H 0.08 1.78 7.84 -51.93 -0.41 1.38 16 40 H 0.09 1.66 4.20 -51.93 -0.22 1.44 16 41 H 0.09 1.38 7.56 -52.48 -0.40 0.99 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.77 6.72 -51.93 -0.35 0.42 16 48 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 354.34 15.07 5.34 5.34 Total: -1.00 -28.71 354.34 -7.91 -36.62 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -8.70 Total: 1.57 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -0.07 Total: -17.43 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.46 Total: -36.76 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.28 Total: -6.05 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.66 Total: 16.72 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.71 -7.91 -36.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615504234.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.018 kcal (2) G-P(sol) polarization free energy of solvation -28.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.80 seconds