Wall clock time and date at job start Tue Mar 31 2020 05:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 113.99998 * 2 1 4 4 C 1.53004 * 109.47440 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.46964 * 67.53403 * 4 3 2 6 6 C 1.46909 * 110.99697 * 290.44250 * 5 4 3 7 7 C 1.50698 * 109.47068 * 299.80651 * 6 5 4 8 8 H 1.08005 * 119.99803 * 4.69483 * 7 6 5 9 9 C 1.37870 * 120.00027 * 184.68779 * 7 6 5 10 10 N 1.31512 * 120.00162 * 0.02562 * 9 7 6 11 11 Si 1.86808 * 119.99901 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46978 * 90.00342 * 11 9 7 13 13 H 1.48496 * 109.46827 * 209.99782 * 11 9 7 14 14 H 1.48492 * 109.47143 * 330.00193 * 11 9 7 15 15 C 1.46901 * 110.99873 * 54.39276 * 5 4 3 16 16 C 1.52999 * 109.46989 * 69.69910 * 15 5 4 17 17 H 1.08997 * 109.24107 * 302.48988 * 16 15 5 18 18 C 1.50164 * 109.55769 * 182.89618 * 16 15 5 19 19 C 1.50703 * 117.89166 * 42.73128 * 18 16 15 20 20 C 1.29437 * 124.14919 * 222.97510 * 18 16 15 21 21 C 1.50069 * 124.07287 * 0.24593 * 20 18 16 22 22 C 1.53009 * 110.14907 * 342.86526 * 21 20 18 23 23 C 1.53024 * 109.36026 * 62.14647 * 16 15 5 24 24 H 1.08992 * 109.64202 * 289.32929 * 23 16 15 25 25 C 1.52999 * 109.63881 * 49.74679 * 23 16 15 26 26 H 1.09002 * 109.47021 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47718 * 300.00271 * 1 2 3 28 28 H 1.08995 * 109.47124 * 60.00620 * 1 2 3 29 29 H 1.08998 * 109.47509 * 59.99327 * 3 2 1 30 30 H 1.09000 * 109.47015 * 299.99394 * 3 2 1 31 31 H 1.08996 * 109.47233 * 307.53701 * 4 3 2 32 32 H 1.08999 * 109.47052 * 187.52786 * 4 3 2 33 33 H 1.08994 * 109.47178 * 59.80695 * 6 5 4 34 34 H 1.09004 * 109.46985 * 179.80991 * 6 5 4 35 35 H 0.96997 * 120.00225 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.47449 * 309.69115 * 15 5 4 37 37 H 1.09005 * 109.46763 * 189.69404 * 15 5 4 38 38 H 1.08997 * 109.47337 * 175.06413 * 19 18 16 39 39 H 1.09003 * 109.46921 * 295.06432 * 19 18 16 40 40 H 1.09003 * 109.47028 * 55.06419 * 19 18 16 41 41 H 1.08000 * 117.96440 * 180.22153 * 20 18 16 42 42 H 1.09003 * 109.35602 * 222.65576 * 21 20 18 43 43 H 1.09004 * 109.35956 * 103.07417 * 21 20 18 44 44 H 1.08999 * 109.64692 * 289.75156 * 22 21 20 45 45 H 1.09000 * 109.64811 * 169.12369 * 22 21 20 46 46 H 1.09007 * 109.46589 * 179.57703 * 25 23 16 47 47 H 1.08993 * 109.47705 * 299.57466 * 25 23 16 48 48 H 1.09000 * 109.47197 * 59.58234 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9823 0.6182 -1.2790 6 6 3.5935 -0.7938 -1.3940 7 6 4.2245 -1.5813 -0.2747 8 1 4.7890 -1.0720 0.4924 9 6 4.0811 -2.9518 -0.2299 10 7 3.3941 -3.5720 -1.1642 11 14 4.8627 -3.9279 1.1579 12 1 3.9033 -4.0396 2.2858 13 1 5.2144 -5.2859 0.6710 14 1 6.0915 -3.2340 1.6202 15 6 3.4655 1.4003 -2.4100 16 6 4.1577 2.7643 -2.4455 17 1 3.9944 3.2748 -1.4965 18 6 3.5807 3.5921 -3.5576 19 6 2.0855 3.5766 -3.7452 20 6 4.2865 4.3140 -4.3675 21 6 5.7823 4.4211 -4.3122 22 6 6.2962 3.9296 -2.9573 23 6 5.6594 2.5655 -2.6627 24 1 6.1061 2.1388 -1.7648 25 6 5.8875 1.6248 -3.8475 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.6885 1.8464 0.8899 30 1 1.6886 1.8463 -0.8900 31 1 3.8479 0.5320 0.8158 32 1 3.9780 2.1717 0.1353 33 1 2.5087 -0.8783 -1.3310 34 1 3.9337 -1.1875 -2.3518 35 1 3.2929 -4.5361 -1.1325 36 1 2.3909 1.5410 -2.2937 37 1 3.6636 0.8680 -3.3404 38 1 1.8098 4.2857 -4.5257 39 1 1.7660 2.5754 -4.0346 40 1 1.5991 3.8574 -2.8110 41 1 3.7666 4.8739 -5.1309 42 1 6.0756 5.4614 -4.4541 43 1 6.2177 3.8137 -5.1057 44 1 6.0164 4.6402 -2.1796 45 1 7.3809 3.8278 -2.9917 46 1 6.9580 1.4912 -4.0044 47 1 5.4277 0.6590 -3.6385 48 1 5.4398 2.0540 -4.7438 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615504238.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:49 Heat of formation + Delta-G solvation = -32.339781 kcal Electronic energy + Delta-G solvation = -24217.309365 eV Core-core repulsion = 21079.498802 eV Total energy + Delta-G solvation = -3137.810562 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -39.73234 -37.81373 -35.61587 -33.25989 -32.57347 -31.38473 -28.91024 -27.70061 -26.44909 -26.16563 -25.72950 -24.32437 -22.60610 -21.40226 -20.36786 -19.06893 -16.68596 -16.31362 -16.03871 -15.85287 -15.46473 -14.64728 -14.61481 -14.39435 -14.23061 -13.88063 -13.38165 -13.01489 -12.89864 -12.71614 -12.37281 -12.24077 -11.88006 -11.74472 -11.69891 -11.54506 -11.27801 -11.09092 -11.03987 -10.95870 -10.67929 -10.61722 -10.56220 -10.18893 -9.96348 -9.90141 -9.72758 -9.57447 -8.96094 -8.92435 -8.50135 -8.22977 -6.93820 -5.83294 -3.79823 2.42672 3.41783 3.47433 3.51100 4.42376 4.57595 4.78944 4.93467 5.12608 5.16801 5.34137 5.47451 5.53904 5.55014 5.58695 5.59899 5.66428 5.71015 5.74065 5.75899 5.81031 5.85458 5.93181 5.98541 6.01333 6.04102 6.10041 6.13633 6.14601 6.24132 6.29300 6.34277 6.44001 6.54015 6.61178 6.75821 6.84599 6.93657 6.98833 7.19970 7.48462 7.79379 7.90284 7.95644 8.26288 8.44030 8.77123 9.24449 9.80386 11.28504 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017779 B = 0.005582 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.543491 B = 5014.482677 C = 5941.410965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.344 6.344 3 C 0.022 3.978 4 C 0.060 3.940 5 N -0.526 5.526 6 C 0.184 3.816 7 C -0.487 4.487 8 H 0.057 0.943 9 C 0.056 3.944 10 N -0.901 5.901 11 Si 0.889 3.111 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.276 1.276 15 C 0.054 3.946 16 C -0.041 4.041 17 H 0.072 0.928 18 C -0.106 4.106 19 C -0.122 4.122 20 C -0.169 4.169 21 C -0.085 4.085 22 C -0.117 4.117 23 C -0.072 4.072 24 H 0.084 0.916 25 C -0.146 4.146 26 H 0.081 0.919 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.033 0.967 30 H 0.043 0.957 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.028 0.972 34 H 0.021 0.979 35 H 0.256 0.744 36 H 0.030 0.970 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.043 0.957 47 H 0.070 0.930 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.229 15.652 -3.906 16.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.262 6.262 3 C -0.057 4.057 4 C -0.069 4.069 5 N -0.249 5.249 6 C 0.060 3.940 7 C -0.526 4.526 8 H 0.075 0.925 9 C -0.144 4.144 10 N -0.542 5.542 11 Si 0.718 3.282 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.201 1.201 15 C -0.074 4.074 16 C -0.060 4.060 17 H 0.090 0.910 18 C -0.107 4.107 19 C -0.179 4.179 20 C -0.188 4.188 21 C -0.122 4.122 22 C -0.155 4.155 23 C -0.090 4.090 24 H 0.102 0.898 25 C -0.203 4.203 26 H 0.099 0.901 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.039 0.961 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.113 0.887 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.062 0.938 47 H 0.088 0.912 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.647 15.303 -3.986 15.826 hybrid contribution -0.907 -0.378 0.722 1.219 sum -1.554 14.925 -3.264 15.356 Atomic orbital electron populations 1.22670 0.83790 1.02185 0.98299 1.88464 1.17273 1.25903 1.94590 1.23380 0.97783 0.85915 0.98603 1.22229 0.89211 0.99581 0.95854 1.62288 1.58155 1.05211 0.99259 1.19977 0.96451 0.80564 0.96998 1.21071 1.31316 0.91231 1.08963 0.92501 1.24867 0.95815 0.97754 0.95964 1.69955 1.41788 1.08659 1.33749 0.86645 0.79558 0.79400 0.82607 1.21045 1.21589 1.20066 1.22238 0.95876 0.93071 0.96219 1.20016 0.95208 0.94953 0.95780 0.91032 1.20946 0.95233 0.97315 0.97204 1.20996 0.93478 1.02081 1.01336 1.21809 0.95650 1.01367 0.99932 1.20391 0.93187 1.00304 0.98316 1.21690 0.99620 0.97561 0.96612 1.20968 0.94210 0.94076 0.99744 0.89750 1.21895 1.00521 1.00477 0.97402 0.90051 0.95350 0.95313 0.94856 0.93911 0.88865 0.91638 0.95474 0.96050 0.93407 0.95246 0.91134 0.92694 0.91424 0.92180 0.88664 0.92191 0.91099 0.92412 0.92184 0.93757 0.91156 0.93306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.34 -7.19 7.59 -35.23 -0.27 -7.46 16 3 C 0.02 0.38 5.72 37.16 0.21 0.59 16 4 C 0.06 1.13 5.44 -3.82 -0.02 1.11 16 5 N -0.53 -10.83 4.25 -236.06 -1.00 -11.84 16 6 C 0.18 4.75 4.26 -4.97 -0.02 4.73 16 7 C -0.49 -13.66 8.46 -34.44 -0.29 -13.95 16 8 H 0.06 1.58 6.56 -52.48 -0.34 1.24 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 11 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 15 C 0.05 0.95 2.97 -3.82 -0.01 0.94 16 16 C -0.04 -0.60 2.07 -92.02 -0.19 -0.79 16 17 H 0.07 1.05 6.68 -51.93 -0.35 0.71 16 18 C -0.11 -1.39 5.10 -100.89 -0.51 -1.90 16 19 C -0.12 -1.45 8.94 36.01 0.32 -1.13 16 20 C -0.17 -2.04 8.75 -35.90 -0.31 -2.35 16 21 C -0.09 -0.96 5.48 -28.18 -0.15 -1.11 16 22 C -0.12 -1.42 5.65 -26.52 -0.15 -1.57 16 23 C -0.07 -1.04 2.62 -90.40 -0.24 -1.28 16 24 H 0.08 1.38 7.99 -51.93 -0.41 0.97 16 25 C -0.15 -2.20 7.87 37.16 0.29 -1.91 16 26 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.04 0.71 5.71 -51.93 -0.30 0.41 16 31 H 0.09 1.99 6.14 -51.93 -0.32 1.67 16 32 H 0.07 1.06 6.80 -51.93 -0.35 0.70 16 33 H 0.03 0.76 5.31 -51.93 -0.28 0.48 16 34 H 0.02 0.61 8.02 -51.93 -0.42 0.19 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.03 0.52 4.30 -51.93 -0.22 0.30 16 37 H 0.07 1.33 5.99 -51.93 -0.31 1.01 16 38 H 0.05 0.56 7.57 -51.93 -0.39 0.17 16 39 H 0.07 0.85 7.31 -51.93 -0.38 0.47 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.10 1.03 7.57 -52.49 -0.40 0.64 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.79 6.92 -51.93 -0.36 0.43 16 44 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.07 1.26 6.30 -51.93 -0.33 0.93 16 48 H 0.05 0.69 5.71 -51.93 -0.30 0.39 16 LS Contribution 352.23 15.07 5.31 5.31 Total: -1.00 -30.02 352.23 -8.70 -38.72 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -8.39 Total: 0.13 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -0.06 Total: -15.54 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: -0.27 Total: -38.32 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.27 Total: -7.46 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.02 -8.70 -38.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615504238.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.380 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds