Wall clock time and date at job start Tue Mar 31 2020 05:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08993 * 109.46837 * 2 1 4 4 C 1.50688 * 109.47132 * 239.99521 * 2 1 3 5 5 H 1.08004 * 120.00257 * 240.00400 * 4 2 1 6 6 C 1.37883 * 120.00266 * 60.00240 * 4 2 1 7 7 N 1.31510 * 119.99888 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99984 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46883 * 90.00508 * 8 6 4 10 10 H 1.48506 * 109.47041 * 209.99799 * 8 6 4 11 11 H 1.48497 * 109.47595 * 330.00506 * 8 6 4 12 12 N 1.46500 * 109.46754 * 119.99559 * 2 1 3 13 13 C 1.46504 * 120.00231 * 59.72494 * 12 2 1 14 14 C 1.34780 * 120.00046 * 240.00460 * 12 2 1 15 15 O 1.21274 * 119.99421 * 353.13416 * 14 12 2 16 16 C 1.50702 * 119.99904 * 173.14236 * 14 12 2 17 17 C 1.52997 * 110.01651 * 314.60326 * 16 14 12 18 18 C 1.54266 * 110.02823 * 193.15911 * 16 14 12 19 19 C 1.54886 * 104.19640 * 264.32548 * 18 16 14 20 20 C 1.54891 * 102.74770 * 322.05624 * 19 18 16 21 21 H 1.08991 * 110.60347 * 279.20974 * 20 19 18 22 22 C 1.53005 * 110.48395 * 156.61889 * 20 19 18 23 23 C 1.53871 * 110.03329 * 75.99324 * 16 14 12 24 24 C 1.52996 * 110.03684 * 238.56743 * 23 16 14 25 25 C 1.53006 * 110.03475 * 359.95012 * 23 16 14 26 26 H 1.09003 * 109.46958 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47381 * 300.00637 * 1 2 3 28 28 H 1.09003 * 109.46200 * 60.00557 * 1 2 3 29 29 H 0.96995 * 120.00236 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47222 * 264.92087 * 13 12 2 31 31 H 1.09003 * 109.46479 * 24.91424 * 13 12 2 32 32 H 1.08991 * 109.47225 * 144.91662 * 13 12 2 33 33 H 1.08997 * 109.47500 * 72.15706 * 17 16 14 34 34 H 1.09001 * 109.47231 * 192.15846 * 17 16 14 35 35 H 1.09004 * 109.47213 * 312.15338 * 17 16 14 36 36 H 1.09000 * 110.48831 * 23.00824 * 18 16 14 37 37 H 1.09005 * 110.48502 * 145.64827 * 18 16 14 38 38 H 1.09005 * 110.75829 * 203.74470 * 19 18 16 39 39 H 1.09000 * 110.91729 * 80.44721 * 19 18 16 40 40 H 1.08996 * 109.47571 * 305.23391 * 22 20 19 41 41 H 1.09004 * 109.46615 * 65.22963 * 22 20 19 42 42 H 1.09001 * 109.47105 * 185.22782 * 22 20 19 43 43 H 1.09002 * 109.47161 * 67.81200 * 24 23 16 44 44 H 1.08994 * 109.47851 * 187.81828 * 24 23 16 45 45 H 1.09005 * 109.46997 * 307.82265 * 24 23 16 46 46 H 1.09007 * 109.46502 * 61.36909 * 25 23 16 47 47 H 1.08993 * 109.47406 * 181.36699 * 25 23 16 48 48 H 1.08994 * 109.47183 * 301.37341 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9438 0.8301 -2.6035 8 14 2.3227 -1.1198 -4.0078 9 1 1.3448 -2.1618 -4.4122 10 1 2.4875 -0.1406 -5.1120 11 1 3.6309 -1.7570 -3.7117 12 7 2.0183 -0.6905 1.1962 13 6 1.6594 -2.0913 1.4313 14 6 2.7931 -0.0355 2.0835 15 8 3.1889 1.0832 1.8329 16 6 3.1676 -0.6931 3.3867 17 6 1.9363 -1.3484 4.0154 18 6 3.7636 0.3510 4.3533 19 6 5.2945 0.2188 4.1584 20 6 5.4857 -1.3079 3.9801 21 1 5.4901 -1.8095 4.9477 22 6 6.7817 -1.6001 3.2210 23 6 4.2625 -1.7478 3.1493 24 6 3.7777 -3.1213 3.6175 25 6 4.6274 -1.7996 1.6643 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 0.7092 1.1612 -3.4845 30 1 0.7848 -2.1384 2.0801 31 1 1.4324 -2.5727 0.4800 32 1 2.4939 -2.6051 1.9084 33 1 1.6671 -2.2377 3.4457 34 1 2.1601 -1.6300 5.0444 35 1 1.1044 -0.6441 4.0043 36 1 3.4300 1.3534 4.0851 37 1 3.4886 0.1190 5.3823 38 1 5.8283 0.5746 5.0397 39 1 5.6212 0.7557 3.2679 40 1 6.7805 -1.0555 2.2768 41 1 7.6340 -1.2832 3.8221 42 1 6.8538 -2.6696 3.0235 43 1 2.9710 -3.4625 2.9687 44 1 4.6030 -3.8319 3.5753 45 1 3.4133 -3.0481 4.6422 46 1 5.0177 -0.8308 1.3522 47 1 5.3856 -2.5658 1.5029 48 1 3.7390 -2.0387 1.0800 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699132131.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:16 Heat of formation + Delta-G solvation = -23.489336 kcal Electronic energy + Delta-G solvation = -25207.638501 eV Core-core repulsion = 22070.211723 eV Total energy + Delta-G solvation = -3137.426778 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.14216 -37.65009 -35.46963 -33.53311 -32.42244 -31.86714 -29.23297 -28.04062 -27.28377 -26.25792 -25.18403 -23.54309 -23.51375 -22.06017 -19.98429 -18.65309 -17.32407 -16.49176 -16.27717 -15.62398 -15.11459 -14.70978 -14.53237 -14.00469 -13.79230 -13.30298 -13.24094 -13.03805 -12.86012 -12.49937 -12.29733 -12.18619 -11.74644 -11.62736 -11.43095 -11.31579 -11.17414 -11.04454 -10.97550 -10.84397 -10.74456 -10.59806 -10.49818 -10.30472 -10.19973 -10.18354 -10.12693 -10.04628 -9.82638 -9.11831 -8.66306 -8.38169 -7.45584 -6.03891 -4.11224 3.27261 3.34660 3.37232 3.50715 4.05176 4.42471 4.57116 4.69950 4.83684 5.20769 5.27288 5.31023 5.40273 5.43924 5.50568 5.52083 5.59137 5.66673 5.71827 5.82715 5.86586 5.90290 5.94818 5.98799 6.06044 6.07877 6.16471 6.20933 6.27057 6.31205 6.37895 6.40252 6.46450 6.54851 6.60462 6.65995 6.79088 6.84084 6.88871 7.11637 7.51988 7.59828 7.76826 8.06693 8.25849 8.64238 8.88836 9.18965 9.55372 11.01370 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021362 B = 0.006061 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.421026 B = 4618.500973 C = 4962.937960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.259 3.741 3 H 0.061 0.939 4 C -0.521 4.521 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.591 5.591 13 C 0.055 3.945 14 C 0.524 3.476 15 O -0.552 6.552 16 C -0.078 4.078 17 C -0.157 4.157 18 C -0.103 4.103 19 C -0.117 4.117 20 C -0.084 4.084 21 H 0.071 0.929 22 C -0.145 4.145 23 C -0.047 4.047 24 C -0.150 4.150 25 C -0.168 4.168 26 H 0.028 0.972 27 H 0.009 0.991 28 H 0.092 0.908 29 H 0.262 0.738 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.052 0.948 43 H 0.068 0.932 44 H 0.053 0.947 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.053 0.947 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.985 -7.870 13.841 16.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.079 0.921 4 C -0.560 4.560 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.321 5.321 13 C -0.088 4.088 14 C 0.311 3.689 15 O -0.431 6.431 16 C -0.081 4.081 17 C -0.214 4.214 18 C -0.141 4.141 19 C -0.154 4.154 20 C -0.103 4.103 21 H 0.089 0.911 22 C -0.202 4.202 23 C -0.048 4.048 24 C -0.207 4.207 25 C -0.225 4.225 26 H 0.048 0.952 27 H 0.028 0.972 28 H 0.110 0.890 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.072 0.928 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.086 -7.158 13.523 16.123 hybrid contribution 0.185 -0.512 -0.937 1.084 sum 5.271 -7.670 12.585 15.652 Atomic orbital electron populations 1.22093 0.98445 0.99294 1.00624 1.18884 0.90585 0.94453 0.80236 0.92138 1.21319 1.31511 1.12824 0.90316 0.92302 1.24887 0.95038 0.94970 0.98907 1.69876 1.36563 1.22619 1.23628 0.86540 0.79194 0.79318 0.82608 1.20686 1.21161 1.19942 1.48124 1.49268 1.11298 1.23442 1.22452 0.99813 0.84292 1.02275 1.20082 0.78223 0.85809 0.84760 1.90612 1.54210 1.20297 1.77999 1.21478 0.96084 0.96067 0.94490 1.22491 0.96598 1.01793 1.00524 1.22292 0.95246 0.99372 0.97169 1.22520 0.95895 0.95435 1.01577 1.22008 0.94025 0.96165 0.98093 0.91071 1.21885 0.96383 1.01214 1.00700 1.21082 0.93563 0.93812 0.96296 1.22280 1.01168 0.95856 1.01383 1.22516 1.03221 1.02321 0.94446 0.95244 0.97195 0.88963 0.92777 0.93769 0.90514 0.90101 0.89924 0.92345 0.92753 0.90329 0.91789 0.92123 0.90870 0.91928 0.93316 0.92908 0.91377 0.92818 0.92072 0.91915 0.92795 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.97 37.16 0.33 -3.19 16 2 C 0.26 6.62 2.62 -69.08 -0.18 6.44 16 3 H 0.06 1.81 6.92 -51.93 -0.36 1.46 16 4 C -0.52 -14.03 7.96 -34.44 -0.27 -14.30 16 5 H 0.06 1.56 7.44 -52.48 -0.39 1.16 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.32 11.32 55.43 0.63 -24.69 16 8 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.59 -12.46 2.10 -175.26 -0.37 -12.83 16 13 C 0.05 0.92 6.22 59.85 0.37 1.29 16 14 C 0.52 10.84 4.50 -10.98 -0.05 10.79 16 15 O -0.55 -13.72 14.93 5.56 0.08 -13.63 16 16 C -0.08 -1.20 0.62 -154.54 -0.10 -1.30 16 17 C -0.16 -2.05 6.24 37.16 0.23 -1.82 16 18 C -0.10 -1.51 5.61 -25.07 -0.14 -1.65 16 19 C -0.12 -1.59 6.33 -24.74 -0.16 -1.75 16 20 C -0.08 -1.04 2.91 -88.96 -0.26 -1.29 16 21 H 0.07 0.77 7.85 -51.93 -0.41 0.37 16 22 C -0.14 -1.69 8.01 37.16 0.30 -1.39 16 23 C -0.05 -0.64 0.56 -153.39 -0.09 -0.72 16 24 C -0.15 -1.64 7.03 37.16 0.26 -1.38 16 25 C -0.17 -2.72 5.82 37.16 0.22 -2.50 16 26 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 27 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.04 0.67 6.52 -51.93 -0.34 0.33 16 31 H 0.08 1.39 7.12 -51.93 -0.37 1.02 16 32 H 0.08 1.18 1.48 -51.93 -0.08 1.10 16 33 H 0.08 1.01 3.12 -51.93 -0.16 0.85 16 34 H 0.06 0.63 6.94 -51.93 -0.36 0.27 16 35 H 0.05 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.08 1.33 7.07 -51.93 -0.37 0.97 16 37 H 0.06 0.78 7.66 -51.93 -0.40 0.38 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.17 8.04 -51.93 -0.42 0.75 16 40 H 0.06 0.83 6.54 -51.93 -0.34 0.49 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.05 0.57 7.70 -51.93 -0.40 0.17 16 43 H 0.07 0.74 4.77 -51.93 -0.25 0.49 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.59 6.55 -51.93 -0.34 0.25 16 46 H 0.06 1.19 6.86 -51.93 -0.36 0.84 16 47 H 0.05 0.76 6.93 -51.93 -0.36 0.40 16 48 H 0.08 1.51 3.96 -51.93 -0.21 1.31 16 LS Contribution 334.08 15.07 5.03 5.03 Total: -1.00 -30.12 334.08 -7.12 -37.24 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -7.86 Total: 3.86 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 0.38 Total: -11.12 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.26 Total: -37.51 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.08 Total: -13.63 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.12 -7.12 -37.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699132131.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.753 kcal (2) G-P(sol) polarization free energy of solvation -30.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds