Wall clock time and date at job start Tue Mar 31 2020 05:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47484 * 2 1 4 4 C 1.53002 * 109.47226 * 120.00393 * 2 1 3 5 5 N 1.46498 * 109.47351 * 172.94768 * 4 2 1 6 6 C 1.46505 * 119.99516 * 275.71582 * 5 4 2 7 7 C 1.50693 * 109.47221 * 275.91111 * 6 5 4 8 8 H 1.08007 * 120.00076 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00056 * 180.02562 * 7 6 5 10 10 N 1.31507 * 120.00039 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99751 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47091 * 90.00279 * 11 9 7 13 13 H 1.48498 * 109.47113 * 209.99822 * 11 9 7 14 14 H 1.48498 * 109.47525 * 329.99974 * 11 9 7 15 15 C 1.34770 * 120.00326 * 95.71340 * 5 4 2 16 16 O 1.21277 * 119.99958 * 4.68260 * 15 5 4 17 17 C 1.50704 * 120.00019 * 184.67822 * 15 5 4 18 18 H 1.08994 * 109.47344 * 306.84767 * 17 15 5 19 19 C 1.53001 * 109.47025 * 66.84846 * 17 15 5 20 20 C 1.52998 * 109.47324 * 180.02562 * 19 17 15 21 21 C 1.53003 * 109.46828 * 299.99951 * 20 19 17 22 22 C 1.52994 * 109.47344 * 60.00090 * 21 20 19 23 23 C 1.52998 * 109.47084 * 299.99752 * 22 21 20 24 24 H 1.09003 * 109.47427 * 300.00311 * 23 22 21 25 25 C 1.53001 * 109.47324 * 179.97438 * 23 22 21 26 26 H 1.09002 * 109.47188 * 299.99971 * 1 2 3 27 27 H 1.09005 * 109.47199 * 59.99743 * 1 2 3 28 28 H 1.08993 * 109.47453 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47188 * 240.00029 * 2 1 3 30 30 H 1.09005 * 109.47149 * 65.97561 * 3 2 1 31 31 H 1.08999 * 109.47051 * 185.98006 * 3 2 1 32 32 H 1.09002 * 109.46894 * 305.97784 * 3 2 1 33 33 H 1.08989 * 109.47207 * 52.94155 * 4 2 1 34 34 H 1.09007 * 109.46900 * 292.94049 * 4 2 1 35 35 H 1.08999 * 109.47410 * 35.91756 * 6 5 4 36 36 H 1.09002 * 109.46945 * 155.91425 * 6 5 4 37 37 H 0.96997 * 120.00315 * 179.97438 * 10 9 7 38 38 H 1.09003 * 109.47218 * 59.99563 * 19 17 15 39 39 H 1.09003 * 109.47109 * 299.99912 * 19 17 15 40 40 H 1.08994 * 109.47292 * 59.99769 * 20 19 17 41 41 H 1.08996 * 109.47357 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.47231 * 180.02562 * 21 20 19 43 43 H 1.09005 * 109.46946 * 299.99471 * 21 20 19 44 44 H 1.09003 * 109.47325 * 179.97438 * 22 21 20 45 45 H 1.08996 * 109.47511 * 59.99561 * 22 21 20 46 46 H 1.08998 * 109.46755 * 300.00005 * 25 23 22 47 47 H 1.08993 * 109.46990 * 60.00076 * 25 23 22 48 48 H 1.09005 * 109.46890 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4951 -0.8700 1.1674 6 6 4.0762 -1.9965 0.4328 7 6 4.1281 -3.2071 1.3286 8 1 3.7643 -3.1439 2.3436 9 6 4.6401 -4.3955 0.8526 10 7 5.0836 -4.4724 -0.3831 11 14 4.7038 -5.8964 1.9629 12 1 3.4440 -6.6700 1.8222 13 1 5.8550 -6.7505 1.5751 14 1 4.8630 -5.4620 3.3740 15 6 4.2992 0.0296 1.7679 16 8 3.8202 0.9133 2.4465 17 6 5.7936 -0.0627 1.5962 18 1 6.1284 -1.0657 1.8604 19 6 6.1586 0.2297 0.1395 20 6 7.6756 0.1354 -0.0350 21 6 8.3583 1.1571 0.8767 22 6 7.9934 0.8647 2.3334 23 6 6.4763 0.9590 2.5079 24 1 6.1418 1.9623 2.2438 25 6 6.1113 0.6661 3.9646 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.7667 1.9245 0.9387 31 1 3.1248 1.4442 -0.1071 32 1 1.5920 1.9862 -0.8317 33 1 1.5773 -1.7060 1.3145 34 1 1.7834 -0.1398 2.1348 35 1 3.4619 -2.2166 -0.4403 36 1 5.0854 -1.7388 0.1114 37 1 5.4442 -5.3083 -0.7179 38 1 5.8237 1.2328 -0.1248 39 1 5.6726 -0.4984 -0.5100 40 1 8.0101 -0.8678 0.2290 41 1 7.9357 0.3441 -1.0727 42 1 9.4391 1.0903 0.7521 43 1 8.0239 2.1604 0.6125 44 1 8.4801 1.5923 2.9830 45 1 8.3278 -0.1385 2.5975 46 1 6.4457 -0.3373 4.2281 47 1 6.5976 1.3935 4.6143 48 1 5.0304 0.7328 4.0887 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714396636.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:52 Heat of formation + Delta-G solvation = -77.916175 kcal Electronic energy + Delta-G solvation = -24407.938183 eV Core-core repulsion = 21268.151280 eV Total energy + Delta-G solvation = -3139.786903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 8.18 seconds Orbital eigenvalues (eV) -39.95386 -37.55409 -35.78274 -34.12688 -32.37060 -31.98804 -30.64495 -27.42326 -26.78378 -26.49823 -25.23206 -23.28866 -22.35433 -21.05222 -19.96599 -19.36396 -18.10873 -16.56502 -16.25697 -15.55328 -14.65554 -14.57709 -14.37858 -14.19535 -14.08939 -13.79314 -13.36451 -13.21445 -12.67646 -12.46338 -12.20468 -12.06858 -11.90653 -11.76257 -11.56174 -11.39462 -11.24737 -11.05659 -10.98908 -10.82190 -10.79890 -10.65341 -10.55412 -10.42021 -10.31586 -10.13459 -10.00887 -9.97210 -9.76490 -9.46382 -8.73032 -8.46741 -7.57689 -6.16445 -4.22799 3.22643 3.30030 3.33368 3.51350 4.02299 4.35388 5.01046 5.03960 5.11967 5.16513 5.29747 5.34188 5.43235 5.49608 5.58828 5.64908 5.77780 5.84046 5.85858 5.91712 5.95200 6.01685 6.06864 6.11612 6.14720 6.18726 6.29269 6.33371 6.37108 6.40473 6.42538 6.44846 6.47333 6.51509 6.59259 6.63643 6.68121 6.77430 6.86807 6.89471 6.97084 7.27869 7.63493 7.78975 8.09908 8.46269 8.82831 9.13878 9.44714 10.89871 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.010163 B = 0.008395 C = 0.005628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.296874 B = 3334.668373 C = 4974.179038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 C -0.134 4.134 4 C 0.122 3.878 5 N -0.593 5.593 6 C 0.226 3.774 7 C -0.535 4.535 8 H 0.059 0.941 9 C 0.065 3.935 10 N -0.891 5.891 11 Si 0.893 3.107 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.523 3.477 16 O -0.571 6.571 17 C -0.098 4.098 18 H 0.103 0.897 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.118 4.118 22 C -0.114 4.114 23 C -0.066 4.066 24 H 0.070 0.930 25 C -0.153 4.153 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.030 0.970 36 H 0.056 0.944 37 H 0.264 0.736 38 H 0.056 0.944 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.046 0.954 47 H 0.043 0.957 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.204 9.151 0.299 9.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.192 4.192 4 C -0.001 4.001 5 N -0.322 5.322 6 C 0.106 3.894 7 C -0.574 4.574 8 H 0.077 0.923 9 C -0.137 4.137 10 N -0.529 5.529 11 Si 0.721 3.279 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.312 3.688 16 O -0.453 6.453 17 C -0.119 4.119 18 H 0.121 0.879 19 C -0.153 4.153 20 C -0.154 4.154 21 C -0.156 4.156 22 C -0.152 4.152 23 C -0.085 4.085 24 H 0.088 0.912 25 C -0.210 4.210 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.035 9.447 0.503 9.517 hybrid contribution 0.072 -1.190 0.433 1.269 sum 1.107 8.257 0.936 8.383 Atomic orbital electron populations 1.21746 0.95369 1.01545 1.01228 1.21492 0.95199 0.96774 0.99694 1.21729 1.00911 0.95662 1.00872 1.21337 0.81475 1.00215 0.97098 1.48161 1.05326 1.26449 1.52292 1.19689 0.95273 0.82626 0.91796 1.21506 1.41739 0.95052 0.99100 0.92270 1.24910 0.95020 0.98714 0.95099 1.69911 1.41182 1.26924 1.14932 0.86565 0.77719 0.82620 0.81003 1.20579 1.21079 1.19818 1.20418 0.88984 0.80875 0.78531 1.90521 1.77189 1.36589 1.40952 1.21276 0.92259 1.01866 0.96489 0.87943 1.21694 0.96311 1.01907 0.95353 1.21500 0.95161 0.99758 0.98934 1.21545 0.99448 0.99188 0.95397 1.21617 0.95824 1.01604 0.96139 1.20846 0.93761 0.98850 0.95048 0.91193 1.21964 1.03633 1.00271 0.95166 0.92919 0.93055 0.92665 0.91106 0.92591 0.93076 0.93925 0.90898 0.90876 0.95174 0.92651 0.92608 0.92561 0.89680 0.91424 0.92219 0.92514 0.92399 0.92396 0.91919 0.93456 0.93777 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.19 37.16 0.34 -1.54 16 2 C -0.11 -1.81 3.11 -90.62 -0.28 -2.09 16 3 C -0.13 -2.13 8.21 37.16 0.31 -1.83 16 4 C 0.12 2.30 4.97 -4.04 -0.02 2.28 16 5 N -0.59 -12.29 2.31 -175.06 -0.40 -12.69 16 6 C 0.23 5.25 4.63 -5.19 -0.02 5.23 16 7 C -0.54 -13.86 9.38 -34.44 -0.32 -14.19 16 8 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 9 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -24.21 13.29 55.43 0.74 -23.48 16 11 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 15 C 0.52 10.60 5.29 -10.99 -0.06 10.54 16 16 O -0.57 -12.23 12.83 5.56 0.07 -12.15 16 17 C -0.10 -1.78 1.22 -91.77 -0.11 -1.89 16 18 H 0.10 2.08 7.67 -51.93 -0.40 1.68 16 19 C -0.12 -1.91 4.81 -26.73 -0.13 -2.04 16 20 C -0.12 -1.67 5.92 -26.73 -0.16 -1.83 16 21 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 22 C -0.11 -1.56 5.20 -26.74 -0.14 -1.70 16 23 C -0.07 -1.06 1.87 -90.62 -0.17 -1.23 16 24 H 0.07 1.17 8.03 -51.93 -0.42 0.75 16 25 C -0.15 -2.51 8.87 37.16 0.33 -2.18 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.22 7.99 -51.93 -0.41 0.80 16 30 H 0.05 0.92 8.13 -51.93 -0.42 0.50 16 31 H 0.05 0.89 7.08 -51.93 -0.37 0.52 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.40 8.11 -51.94 -0.42 0.98 16 34 H 0.07 1.40 7.19 -51.93 -0.37 1.02 16 35 H 0.03 0.75 7.96 -51.93 -0.41 0.33 16 36 H 0.06 1.30 3.99 -51.93 -0.21 1.09 16 37 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.56 5.39 -51.93 -0.28 1.28 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.08 1.46 5.77 -51.93 -0.30 1.16 16 LS Contribution 362.61 15.07 5.46 5.46 Total: -1.00 -26.97 362.61 -8.90 -35.87 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -9.05 Total: 3.93 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -0.69 Total: -12.51 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.33 Total: -36.17 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.07 Total: -12.15 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -26.97 -8.90 -35.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714396636.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.041 kcal (2) G-P(sol) polarization free energy of solvation -26.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.18 seconds